PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1d6m
gi|11514602|pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii Length = 653
Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats.
Identities = 136/649 (20%), Positives = 253/649 (38%), Gaps = 72/649 (11%)
Query: 1 MNVIIVESPAKAKTISKYL------GSNYK-------VLSSFGHIRDLPAKK-------- 39
M + I E P+ A+ I+ L G + V GH+ +
Sbjct: 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR 60
Query: 40 -----GSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLD 94
++PEK PS K L I + ++ ++ A DPDREG+ + VLD
Sbjct: 61 WNLADLPIVPEKW---QLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLD 117
Query: 95 VLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINL--DLVNAYLARRALDYLVGFNL 152
L+ ++ ++QR N + Q V A+ R + L + LAR D+L G N+
Sbjct: 118 YLQLA-PEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINM 176
Query: 153 SP---ILWQK--LPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKF 207
+ IL + G S GRVQ+ L L+ R+ +IE+FV+++++ + + TP +++F
Sbjct: 177 TRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERF 236
Query: 208 TAHLT---DFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTST 264
TA + E+ + ++ A+ +++ + V +K + F+ S
Sbjct: 237 TAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSA 296
Query: 265 LQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSIT 324
LQ A+ R G SA + + I QKLYE + Y+ + + A+
Sbjct: 297 LQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAP 356
Query: 325 SHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRS 384
+ R K +AH AI P L ++ ++YNLI ++
Sbjct: 357 DLLPQPVVDPDIRNRCWDDK-KVDAHHAIIPTA-----RSSAINLTENEAKVYNLIARQY 410
Query: 385 VASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILL 444
+ A F + + + G L G+ + + + L
Sbjct: 411 LMQFCPDAVFRKCVIELDIA----KGKFVAKARFLAEAGWRTLL--GSKERDEENDGTPL 464
Query: 445 PYISANEQLIATETNASQHFTEPPPRYSESSLIKKM-----------------EEIGIGR 487
P ++ ++L+ + + T+PP +++++L+ M G+G
Sbjct: 465 PVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGT 524
Query: 488 PSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEI 547
+T A I+E L+KR ++ + R I + G+ + L ++ D TA E L +I
Sbjct: 525 EATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATR---PDMTAHWESVLTQI 581
Query: 548 STGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPK 596
S + +++ + + ID K+ + I+ K
Sbjct: 582 SEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKK 630