PSIBLAST alignment of GI: 254780306 and protein with PDB id: 2gai
>gi|99032438|pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633
>gi|99032439|pdb|2GAI|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633
Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats.
Identities = 230/664 (34%), Positives = 337/664 (50%), Gaps = 60/664 (9%)
Query: 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKH 61
I+VESPAKAKTI LG+ Y+V +S GHI DLP K V EK+FE + + +K
Sbjct: 7 KYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKV 66
Query: 62 LQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVL 121
++ + K L++A+D DREGEAI+WH+ V R+ F+ IT +V+
Sbjct: 67 VEKLKDLAKK-GELLIASDMDREGEAIAWHIARVTNTLGRKN-----RIVFSEITPRVIR 120
Query: 122 NAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRE 181
A+K+PR+I++ V A LARR LD +VG++LSP+LW+ SAGRVQS L+L+C+RE
Sbjct: 121 EAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLKLVCDRE 180
Query: 182 NQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKAT 241
+I FV ++Y ++V F+G E K + + ++
Sbjct: 181 REILRFVPKKYHRITVN---------------FDGLTAEIDVKEKKFFDAETLKEIQSID 225
Query: 242 YSVEKIENKPIKRNPWP-AFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGL 300
V + + +K+ P F TSTLQQ A S+LGFS S TM IAQ+LYEG++ +
Sbjct: 226 ELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETKDGHIAF 285
Query: 301 ITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDF 360
ITYMRTD +S A E R IT +G+ Y+ K S +K Q+AHEAIRP +
Sbjct: 286 ITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSKRERRKSNAK-IQDAHEAIRPTNVFM 344
Query: 361 LPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLC 420
P + ++L+SDQ +LY LIWKR +ASQM +++E T + D + T
Sbjct: 345 TPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLR--TKDGKYRFKGTVLKKI 402
Query: 421 FDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM 480
FDG+ KVW+ E + E + + T+P PRY+E SL+K+M
Sbjct: 403 FDGYEKVWKT--------ERNTGEFPFEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEM 454
Query: 481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADL 540
E +GIGRPSTYA+ ++ L R Y+ + + P G +V +LE +S V FTA++
Sbjct: 455 ERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEM 514
Query: 541 EEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNE 600
E+ LDE+ GK K VL EF+E F D ++ +
Sbjct: 515 EKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRIVV----------------------- 551
Query: 601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLE 660
D T +C KYG ++ C EC TR + ++ + + + L D E
Sbjct: 552 DFPTNQKCSCGKEMRLSFGKYGFYLKC----ECGKTRSVKNDEIAVIDDGKIFLGRKDSE 607
Query: 661 TKES 664
+
Sbjct: 608 SGSP 611