PSIBLAST alignment of GI: 254780306 and protein with PDB id: 2gai

>gi|99032438|pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633
>gi|99032439|pdb|2GAI|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633
 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 230/664 (34%), Positives = 337/664 (50%), Gaps = 60/664 (9%)

Query: 2   NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKH 61
             I+VESPAKAKTI   LG+ Y+V +S GHI DLP  K  V  EK+FE  + +    +K 
Sbjct: 7   KYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKV 66

Query: 62  LQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVL 121
           ++ +    K    L++A+D DREGEAI+WH+  V             R+ F+ IT +V+ 
Sbjct: 67  VEKLKDLAKK-GELLIASDMDREGEAIAWHIARVTNTLGRKN-----RIVFSEITPRVIR 120

Query: 122 NAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRE 181
            A+K+PR+I++  V A LARR LD +VG++LSP+LW+      SAGRVQS  L+L+C+RE
Sbjct: 121 EAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLKLVCDRE 180

Query: 182 NQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKAT 241
            +I  FV ++Y  ++V                F+G   E      K    + +  ++   
Sbjct: 181 REILRFVPKKYHRITVN---------------FDGLTAEIDVKEKKFFDAETLKEIQSID 225

Query: 242 YSVEKIENKPIKRNPWP-AFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGL 300
             V + +   +K+   P  F TSTLQQ A S+LGFS S TM IAQ+LYEG++     +  
Sbjct: 226 ELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETKDGHIAF 285

Query: 301 ITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDF 360
           ITYMRTD   +S  A E  R  IT  +G+ Y+  K     S +K  Q+AHEAIRP +   
Sbjct: 286 ITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSKRERRKSNAK-IQDAHEAIRPTNVFM 344

Query: 361 LPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLC 420
            P +  ++L+SDQ +LY LIWKR +ASQM  +++E T   +     D     + T     
Sbjct: 345 TPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLR--TKDGKYRFKGTVLKKI 402

Query: 421 FDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM 480
           FDG+ KVW+         E +         E +        +  T+P PRY+E SL+K+M
Sbjct: 403 FDGYEKVWKT--------ERNTGEFPFEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEM 454

Query: 481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADL 540
           E +GIGRPSTYA+ ++ L  R Y+   +  + P   G +V  +LE  +S  V   FTA++
Sbjct: 455 ERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEM 514

Query: 541 EEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNE 600
           E+ LDE+  GK   K VL EF+E F    D   ++ +                       
Sbjct: 515 EKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRIVV----------------------- 551

Query: 601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLE 660
           D  T  +C           KYG ++ C    EC  TR + ++   + +  +  L   D E
Sbjct: 552 DFPTNQKCSCGKEMRLSFGKYGFYLKC----ECGKTRSVKNDEIAVIDDGKIFLGRKDSE 607

Query: 661 TKES 664
           +   
Sbjct: 608 SGSP 611