RPSBLAST alignment for GI: 254780306 and conserved domain: TIGR01054

>gnl|CDD|162177 TIGR01054, rgy, reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. Length = 1171

 Score =  267 bits (684), Expect = 9e-72
 Identities = 173/629 (27%), Positives = 268/629 (42%), Gaps = 128/629 (20%)

Query: 4    IIVESPAKAKTISKYLGS-------------------NYKVLSSFGHIRDLPAKKG---- 40
            ++VESP KA+TI+++ G                       + +S GH+ DL   KG    
Sbjct: 605  LVVESPNKARTIARFFGKPSVRKIGGSVVYEVPVGDLILMITASGGHVFDLVTDKGFHGV 664

Query: 41   ----------------------------SVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSS 72
                                           P+   E I +   S  + L+ + H V   
Sbjct: 665  LVENGRYVPVYTSIKRCRDCGYQFTEDRESCPKCGSENIED-SKSIIEILRELAHEVDE- 722

Query: 73   TILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINL 132
              + + TDPD EGE I W +  +L   N      ++R  F+ +T++ +L A++SPR ++ 
Sbjct: 723  --VFIGTDPDTEGEKIGWDLALLLSPYN----PNVKRAEFHEVTRRAILEALESPRSVDE 776

Query: 133  DLVNAYLARRALDYLVGFNLSPILWQKL-PGARSAGRVQSVALRLICNRENQIESFVSEE 191
            +LV A + RR  D  +GF LS  LW+       SAGRVQ+  L  I +R    ES     
Sbjct: 777  NLVKAQVVRRIEDRWIGFTLSQKLWEAFNKRWLSAGRVQTPVLGWIIDRYR--ESREKRG 834

Query: 192  YWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKP 251
            Y  +  L                +  R+      N+ EA +    +      VE I  + 
Sbjct: 835  YLLIFALE---------------SDFRL-GLEHDNRLEAKEFEKDLTWL--DVEDIAERE 876

Query: 252  IKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHM 311
             +RNP P +TT T+ + A+ +LG S   TM+IAQ+L+E         GLITY RTD   +
Sbjct: 877  EERNPLPPYTTDTMLEDANRKLGLSVKETMQIAQELFE--------NGLITYHRTDSTRV 928

Query: 312  SPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPN---DFDFLPSKMK-- 366
            S   +   +  + S  G  Y    PR +         AHE IRP    D D L   +   
Sbjct: 929  SDVGMRVAKEYLASRLGGEYF--YPREWGEGG-----AHECIRPTRPLDVDDLQRLILEG 981

Query: 367  --QFLDS--DQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFD 422
              +      +  +LY+LI++R +ASQM  AK +   + + A   +               
Sbjct: 982  VIELEGLTREHLRLYDLIFRRFMASQMRPAKVDTKEITLKADGKEAEEEGIVEIV---ER 1038

Query: 423  GFLKVW--ENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPP--PRYSESSLIK 478
            GF  V+    + + EK S   +                   +     P    Y++  +++
Sbjct: 1039 GFELVYPLWRKNELEKGSTFIV-----------------KDKELRSVPKVYPYTQGEIVQ 1081

Query: 479  KMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTA 538
            +M+E GIGRPSTYATI+E L +R YV+  K  ++P   G  V  +L N + + V  D T 
Sbjct: 1082 EMKERGIGRPSTYATIVEKLLRRGYVVESKGFLIPTKLGIEVYNYLTNRYPKLVSEDRTR 1141

Query: 539  DLEEKLDEISTGKLNWKEVLHEFWEEFIE 567
            +LEE +D+I  G+L++ EVL   + E   
Sbjct: 1142 ELEEAMDKIERGELDYLEVLESVYREIKS 1170