RPSBLAST alignment for GI: 254780306 and conserved domain: TIGR01056

>gnl|CDD|162178 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative plasmid. This model describes topoisomerase III from bacteria and its equivalents encoded on plasmids. The gene is designated topB if found in the bacterial chromosome, traE on conjugative plasmid RP4, etc. These enzymes are involved in the control of DNA topology. DNA topoisomerase III belongs to the type I topoisomerases, which are ATP-independent. Length = 660
 Score =  191 bits (487), Expect = 5e-49
 Identities = 161/702 (22%), Positives = 288/702 (41%), Gaps = 130/702 (18%)

Query: 1   MNVIIVESPAKAKTISKYL------------GSNYKVLSSFGHIRDL--PAKKGS----- 41
           M +++ E P++A+ ++  L            G    V  + GH+ +L  P +        
Sbjct: 1   MTLVLCEKPSQARDLATVLAKKKKGNGYLEIGVGGFVTWAVGHLVELAEPEEYDEKYKNW 60

Query: 42  ------VLPEKEFEMIWNIDPSSQKHLQNI---IHAVKSSTILILATDPDREGEAISWHV 92
                 + PE  ++++  +   ++K    I   +   K   ++I ATDPDREGE I+  +
Sbjct: 61  RTYDLPLEPED-WQLV--VSDKTKKQFNVIKRILKENKVDEVVI-ATDPDREGELIAREI 116

Query: 93  LDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKS--PRDINLDLVNAYLARRALDYLVGF 150
           LD L    + +K  I+R+  +++    +  A K+  P+     L  + +AR   D+LVG 
Sbjct: 117 LDYL---KVTDKVTIKRLWISSLVDSSIRKAFKNLRPKSETEGLYKSGVARARADWLVGI 173

Query: 151 NLSPILWQK-----LPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRND 205
           NL+    +        G  S GRVQ+  L ++  REN+I++FV + ++ +S  +      
Sbjct: 174 NLTRAFTKLGREAGNDGVLSVGRVQTPTLAMVVKRENEIKNFVGKPFYEVSATINKD-EQ 232

Query: 206 KFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTL 265
           +FT     +   + E++   ++  A+++++ + +    V  IE +  K +    +  S L
Sbjct: 233 EFTTEWQPY---KDEEERELHEFLAENVVTDLTQKPALVTDIEKERKKTSAPLFYDLSAL 289

Query: 266 QQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITS 325
           Q+ A+ R G SA  T+ IAQKLYE          LITY RTD  ++  D  E +   +  
Sbjct: 290 QEDANKRFGISAKRTLDIAQKLYETHK-------LITYPRTDSRYLPEDEKEMLLEVLD- 341

Query: 326 HYGDHYLPEKPRI-YSSKSKNAQ-----------EAHEAIRPNDFDFLPSKMKQFLDSDQ 373
                 L          K ++             E H AI P   DF  S + +    ++
Sbjct: 342 -----ALKVITPALLPIKKRDELTNNRLWNDKKIEDHHAIIPTGNDFNLSDLSE----EE 392

Query: 374 FQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYD 433
             +Y LI +  +   M   ++E TT+                G +L  +G    W+    
Sbjct: 393 RNVYKLIAQNYLMQFMPKEEYETTTI----EIAIGKLMFEAKGKILQDNG----WKALLG 444

Query: 434 QEKNSEED--ILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEI-------- 483
           +++  EE     LP     ++L        +  T+PP RY+E +L+  M           
Sbjct: 445 KQEEDEETEDTTLPAFQKGDELDVETLELLEKQTKPPARYTEGTLLSAMTNPAAFVQDKG 504

Query: 484 ---------GIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEY 534
                    G+G  +T A I+E L+KR ++  +K KI     G+++   L    ++    
Sbjct: 505 LKKTLKETKGLGTEATRADIIENLFKRGFIQKKKNKIYITKNGKLLCLLLPELLTK---P 561

Query: 535 DFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFP 594
           D TA  E+ L+ IS G+ +         ++FI  I               N+ +   I  
Sbjct: 562 DLTAQWEQYLNGISAGEKD--------DDDFINTI---------------NEMIKQTINE 598

Query: 595 PKENNEDSR--TCPECHTHSLSLKLSSKYGAFVGCTNYPECK 634
            K+N E  +           ++   +   G  + C  +PEC 
Sbjct: 599 EKKNPETIQKVAKEPVSCGGIAKCPAKDNGRLIDCKKFPECT 640