RPSBLAST alignment for GI: 254780306 and conserved domain: TIGR01057

>gnl|CDD|162179 TIGR01057, topA_arch, DNA topoisomerase I, archaeal. This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent. Length = 618

 Score =  231 bits (591), Expect = 5e-61
 Identities = 178/628 (28%), Positives = 283/628 (45%), Gaps = 70/628 (11%)

Query: 25  VLSSFGHIRDLPAKKGSVLPEKEFEMIW---NIDPSSQKHLQNIIHAV----KSSTILIL 77
           V S+ GH+  L  K     P  + E  W         + ++   I A+    K +   I 
Sbjct: 42  VASAVGHLFGLHPKSRGGYPVFDIE--WVPIFEFDKGKGYVSKYIKALSKLAKGADEYIN 99

Query: 78  ATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNA 137
           A D D EGE I +  L     K      + +R+ F+ +TKQ +  A  +P +I+  +V+A
Sbjct: 100 ACDYDIEGEVIGFKAL-----KYFCGVERAKRMKFSTLTKQDIRRAYANPEEIDYGMVDA 154

Query: 138 YLARRALDYLVGFNLSPILWQKLPGAR------SAGRVQSVALRLICNRENQIESFVSEE 191
            +AR  LD+  G NLS  L + +  A       SAGRVQ   L  +  RE +I  FV + 
Sbjct: 155 GMARHILDWYWGINLSRALMEAIRAAAGRWVILSAGRVQGPTLAFLVEREREINLFVPKP 214

Query: 192 YWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATY-SVEKIENK 250
           YW +   LE      F A        R EK  I +++EA  +   +KK+ + +VE++ ++
Sbjct: 215 YWVIKATLEK-GGGVFDA--------RPEKWKIWSEEEAKSIKEELKKSPWAAVEEVRSE 265

Query: 251 PIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVH 310
                P P F   TLQ+ A    GFS   T  IAQ+LYE          LI+Y RT    
Sbjct: 266 RSILKPPPPFDLGTLQREAYRIFGFSPKKTQSIAQELYEE--------ALISYPRTSSQK 317

Query: 311 MSPD-ALEAVRRSITSH--YGDH--YLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKM 365
           + P     A+  ++     Y +    L E   +   + K    AH AI P          
Sbjct: 318 LPPSINYRAILDNLAKGPLYREAAERLLETGVLKPVEGKKEDPAHPAIHPTG-----EIP 372

Query: 366 KQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFL 425
            Q L  D+ ++Y+LI +R +A+    A  E++ V +           R +G  +   G+L
Sbjct: 373 SQELSKDEKKVYDLIVRRFLAAFSEEAIREKSKVLL----RIGQEKFRLSGLRVVKLGWL 428

Query: 426 KVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGI 485
           + +        +  E+  LP +   +++     +     T+PP RY ++SLI++ME  G+
Sbjct: 429 EYYH------YSKFEEKELPPLDRGDKIKVVRVDVRVKETQPPARYDKASLIREMESRGL 482

Query: 486 GRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLD 545
           G  +T A I+ETLYKR Y+   K+ I     G  V   L+ +  + +  + T   E KL+
Sbjct: 483 GTKATRARIIETLYKRGYIEG-KKSIKVTPLGEAVIETLQRYCPEIISEELTRRFESKLE 541

Query: 546 EISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTC 605
           +I +G++   EV+ E  +   + ++  KK     + DI  +   S+      + E    C
Sbjct: 542 DIMSGRITKDEVIDEAKKRLRKILEEFKK----RLDDIGIELGKSL-----GSVEVVGKC 592

Query: 606 PECHTHSLSLKLSSKYGAFVGCTNYPEC 633
           P+C    +S    +K G FVGC+NYPEC
Sbjct: 593 PKCGGKLVSKY--AKKGRFVGCSNYPEC 618