RPSBLAST alignment for GI: 254780306 and conserved domain: PRK06599

>gnl|CDD|180637 PRK06599, PRK06599, DNA topoisomerase I; Validated. Length = 675
 Score =  947 bits (2450), Expect = 0.0
 Identities = 344/692 (49%), Positives = 460/692 (66%), Gaps = 20/692 (2%)

Query: 1   MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQK 60
             ++IVESPAKAKTI KYLG +YKVL+SFGH+RDLP KKG V P+ +F   + I    +K
Sbjct: 3   KKLVIVESPAKAKTIKKYLGKDYKVLASFGHVRDLPKKKGGVDPDNDFAPKYEIIEGKEK 62

Query: 61  HLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVV 120
            +  +  A K +  + LATDPDREGEAI+WH+ +VL++  L +K  ++RV FN ITK+ V
Sbjct: 63  VVDALKKAAKKADAVYLATDPDREGEAIAWHIAEVLKEAKLKDK-NVKRVVFNEITKKAV 121

Query: 121 LNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNR 180
             A+++PRDI++DLV+A  ARRALDYLVGF LSP+LW+K+    SAGRVQSVALRLIC R
Sbjct: 122 QEAIENPRDIDMDLVDAQQARRALDYLVGFKLSPLLWKKVRRGLSAGRVQSVALRLICER 181

Query: 181 ENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKA 240
           E++IE+F+ +EYW++   L T   + FTA L + NG+++EK SI+N+++A  L+  ++  
Sbjct: 182 EDEIEAFIPQEYWTIEADLATSNGEPFTAKLVEVNGKKLEKFSITNEEQAKALVKALEGQ 241

Query: 241 TYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGL 300
            Y+V+KIE K  KRNP P F TSTLQQ AS +LGFSA  TMRIAQKLYEGID+    VGL
Sbjct: 242 AYTVDKIEKKERKRNPPPPFITSTLQQEASRKLGFSAKKTMRIAQKLYEGIDLGEGTVGL 301

Query: 301 ITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDF 360
           ITYMRTD V +S +AL+  R+ IT  YG  YLP KPR+Y  KSKNAQEAHEAIRP   + 
Sbjct: 302 ITYMRTDSVRLSNEALDEARKYITKKYGKEYLPAKPRVYKKKSKNAQEAHEAIRPTSINR 361

Query: 361 LPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLC 420
            P  +K +L  DQF+LY LIWKR+VASQMA A  ++T+V+I +     +   R TGS++ 
Sbjct: 362 TPESLKPYLTPDQFKLYELIWKRTVASQMAPAILDQTSVDIASENGKYV--FRATGSVIL 419

Query: 421 FDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM 480
           F GFLKV+    D E+  +E  LLP +   E+L   E    QHFTEPPPRYSE+SL+KK+
Sbjct: 420 FPGFLKVYGESKDDEEEDDEK-LLPPLKEGEKLKLDELLPEQHFTEPPPRYSEASLVKKL 478

Query: 481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADL 540
           EE GIGRPSTYA+I+ TL  R+YV  EK++ +P + GRIV  FL   F +YV+YDFTA L
Sbjct: 479 EEYGIGRPSTYASIISTLQDREYVELEKKRFIPTDLGRIVNDFLVEHFPKYVDYDFTAGL 538

Query: 541 EEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNE 600
           E++LDEI+ GK +WK VL EFWE FI  ++ +++   +  +                  E
Sbjct: 539 EDELDEIAEGKKDWKPVLREFWEPFISNLEKVEEDVRTEKV---------------TQEE 583

Query: 601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLE 660
              TCP+C    L LKL  K G F+GC+ YPECKYT+ +T +  +  E +E V      +
Sbjct: 584 TDETCPKCGGGPLVLKL-GKNGKFLGCSGYPECKYTKNITRDEDEPIEEEEIVEEEKCPK 642

Query: 661 TKESVTLRSGRFGLYVQRGDGKDAKRCSLPKT 692
               + L+ GR+G ++      + K     + 
Sbjct: 643 CGGPLVLKKGRYGKFLACSGYPECKHIKPLEK 674