RPSBLAST alignment for GI: 254780306 and conserved domain: PRK08780

>gnl|CDD|181555 PRK08780, PRK08780, DNA topoisomerase I; Provisional. Length = 780
 Score =  665 bits (1718), Expect = 0.0
 Identities = 280/575 (48%), Positives = 383/575 (66%), Gaps = 10/575 (1%)

Query: 2   NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKH 61
           +++IVESPAKAKTI+KYLG ++ VL+S+GH+RDL  K+G+V PE  F M +++   ++KH
Sbjct: 4   HLVIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEKH 63

Query: 62  LQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVL 121
           ++ I  A KS+  L LATDPDREGEAISWH+ ++L+++ L++   +QRV F  IT + + 
Sbjct: 64  VEAIAKAAKSADDLYLATDPDREGEAISWHLAEILKERGLLKDKPMQRVVFTEITPRAIK 123

Query: 122 NAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRE 181
            AM  PRDI  DLV+A  ARRALDYLVGFNLSP+LW+K+    SAGRVQS ALR+I  RE
Sbjct: 124 EAMAKPRDIASDLVDAQQARRALDYLVGFNLSPLLWRKIQRGLSAGRVQSPALRMIVERE 183

Query: 182 NQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKA- 240
            +IE+F++ EYWS+      P    F A L   +GQ+ E+ +I++   A+     +++A 
Sbjct: 184 EEIEAFIAREYWSIEADCAHPSQ-PFNAKLIKLDGQKFEQFTITDGDTAEAARLRIQQAA 242

Query: 241 --TYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGE-I 297
             T  V  +E+K  KRNP P FTTSTLQQ AS +LGF+   TM++AQKLYEG+D+  E  
Sbjct: 243 QGTLHVTDVESKERKRNPAPPFTTSTLQQEASRKLGFTTRRTMQVAQKLYEGVDLGDEGS 302

Query: 298 VGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPND 357
           VGLITYMRTD V++S DAL  +R  I   YG   LP++P  Y +KSKNAQEAHEA+RP  
Sbjct: 303 VGLITYMRTDSVNLSQDALAEIRDVIARDYGTASLPDQPNTYKTKSKNAQEAHEAVRPTS 362

Query: 358 FDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGS 417
               P+++ +FL  DQ +LY LIWKR+VA QM  A     +V+ +A  ++ +   R TGS
Sbjct: 363 ALRTPAQVARFLSDDQRRLYELIWKRAVACQMIPATLNTVSVD-LAAGSEHV--FRATGS 419

Query: 418 LLCFDGFLKVWENQYDQEKNSEEDI--LLPYISANEQLIATETNASQHFTEPPPRYSESS 475
            +   GFL V+E   D +   +ED    LP +   + +      A QHFTEPPPRY+E+S
Sbjct: 420 TVVVPGFLAVYEEGKDDKSAEDEDEGRKLPPMKEGDNVPLERIRAEQHFTEPPPRYTEAS 479

Query: 476 LIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYD 535
           L+K +EE GIGRPSTYA+I+ TL  RKYV  E R+  P + GR V  FL   F++YV+YD
Sbjct: 480 LVKALEEYGIGRPSTYASIISTLQFRKYVEMEGRRFRPTDVGRAVNKFLTGHFTRYVDYD 539

Query: 536 FTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKID 570
           FTA LE+ LD +S G+  W  ++ +FW  F E ++
Sbjct: 540 FTARLEDDLDAVSRGEKEWIPLMEKFWGPFKELVE 574