RPSBLAST alignment for GI: 254780306 and conserved domain: KOG1956
>gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha [Replication, recombination and repair]. Length = 758
Score = 290 bits (743), Expect = 1e-78
Identities = 139/583 (23%), Positives = 228/583 (39%), Gaps = 72/583 (12%)
Query: 63 QNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLN 122
+ I + + L++ TD DREGE I W ++DV R + + ++R F+ IT+ + +
Sbjct: 98 KTIREEARRADYLVIWTDCDREGENIGWEIIDVCRAVKRLLQ--VRRARFSEITRSAIKS 155
Query: 123 AMKSPRDINLDLVNAYLARRALDYLVG--FN--LSPILWQKLP----GARSAGRVQSVAL 174
A ++ R+I+ LV+A AR LD +G F + +L +K P S G Q L
Sbjct: 156 AARNLREIDEKLVHAVDARIELDLRIGAAFTRLQTLLLRRKFPILGEQVISYGPCQFPTL 215
Query: 175 RLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI 234
+ +R +IE+FV EE+W+L LT+FN +R + ++
Sbjct: 216 GFVVDRYKEIENFVPEEFWTLKF------KHTHKGGLTEFNWKRGHLFDRLSVVILYEIC 269
Query: 235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVN 294
K+AT V K+ KP + T LQ++AS +L SA HTM+IA+KLY+
Sbjct: 270 VEEKEAT--VVKVTKKPKTKYRPLPLDTVELQKLASRKLRLSAKHTMKIAEKLYQK---- 323
Query: 295 GEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIR 354
G I+Y RT+ + S L EK ++++ A R
Sbjct: 324 ----GFISYPRTET------------DNFPSDMDLKALVEK------QTQDPAWGSYAQR 361
Query: 355 PND-FDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLR 413
+ P K + R K V Q +
Sbjct: 362 LLQPENRNPRNGKHNDKAHPPIHPTKFTSREANLSGDHRKVYELVVRHFLACCSQDA--K 419
Query: 414 TTGSLLCFDGF--------LKVWENQYDQEKNSE--EDILLPYISANEQLIATETNASQH 463
+ + D L+V E Y E ED LP E E
Sbjct: 420 GAETTVELDIAQERFSASGLRVLERNYLDVYPYEKWEDKQLPVYEDGELFQPGELEMKDG 479
Query: 464 FTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKR--KILPQNTGRIVT 521
T PP +E+ LI M++ GIG +T A +E + +R YV + + + +P G +
Sbjct: 480 ETSPPKYLTEAELISLMDKNGIGTDATIAEHIEKIQERGYVTKKNKVGRFVPTFLGVALV 539
Query: 522 AFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEF------IEKIDSIKKL 575
++ + + A++E L IS G+ + KEVL + ++ E+
Sbjct: 540 EGYDDMGLEMSKPFLRAEMEVDLKNISDGRKDKKEVLRDIVTKYRAYFHETERKIGCLGE 599
Query: 576 RISNVLDILNDTLSSVIFPPK-------ENNEDSRTCPECHTH 611
+ L+ + TL+ P E + + P+C
Sbjct: 600 SLQRYLEFIASTLTGPDDPEGEPPLLGLEGSTSEKVGPKCGPK 642