RPSBLAST alignment for GI: 254780306 and conserved domain: KOG1956

>gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha [Replication, recombination and repair]. Length = 758
 Score =  290 bits (743), Expect = 1e-78
 Identities = 139/583 (23%), Positives = 228/583 (39%), Gaps = 72/583 (12%)

Query: 63  QNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLN 122
           + I    + +  L++ TD DREGE I W ++DV R    + +  ++R  F+ IT+  + +
Sbjct: 98  KTIREEARRADYLVIWTDCDREGENIGWEIIDVCRAVKRLLQ--VRRARFSEITRSAIKS 155

Query: 123 AMKSPRDINLDLVNAYLARRALDYLVG--FN--LSPILWQKLP----GARSAGRVQSVAL 174
           A ++ R+I+  LV+A  AR  LD  +G  F    + +L +K P       S G  Q   L
Sbjct: 156 AARNLREIDEKLVHAVDARIELDLRIGAAFTRLQTLLLRRKFPILGEQVISYGPCQFPTL 215

Query: 175 RLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI 234
             + +R  +IE+FV EE+W+L               LT+FN +R       +     ++ 
Sbjct: 216 GFVVDRYKEIENFVPEEFWTLKF------KHTHKGGLTEFNWKRGHLFDRLSVVILYEIC 269

Query: 235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVN 294
              K+AT  V K+  KP  +       T  LQ++AS +L  SA HTM+IA+KLY+     
Sbjct: 270 VEEKEAT--VVKVTKKPKTKYRPLPLDTVELQKLASRKLRLSAKHTMKIAEKLYQK---- 323

Query: 295 GEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIR 354
               G I+Y RT+              +  S      L EK      ++++      A R
Sbjct: 324 ----GFISYPRTET------------DNFPSDMDLKALVEK------QTQDPAWGSYAQR 361

Query: 355 PND-FDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLR 413
                +  P   K    +           R         K     V        Q    +
Sbjct: 362 LLQPENRNPRNGKHNDKAHPPIHPTKFTSREANLSGDHRKVYELVVRHFLACCSQDA--K 419

Query: 414 TTGSLLCFDGF--------LKVWENQYDQEKNSE--EDILLPYISANEQLIATETNASQH 463
              + +  D          L+V E  Y      E  ED  LP     E     E      
Sbjct: 420 GAETTVELDIAQERFSASGLRVLERNYLDVYPYEKWEDKQLPVYEDGELFQPGELEMKDG 479

Query: 464 FTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKR--KILPQNTGRIVT 521
            T PP   +E+ LI  M++ GIG  +T A  +E + +R YV  + +  + +P   G  + 
Sbjct: 480 ETSPPKYLTEAELISLMDKNGIGTDATIAEHIEKIQERGYVTKKNKVGRFVPTFLGVALV 539

Query: 522 AFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEF------IEKIDSIKKL 575
              ++   +  +    A++E  L  IS G+ + KEVL +   ++       E+       
Sbjct: 540 EGYDDMGLEMSKPFLRAEMEVDLKNISDGRKDKKEVLRDIVTKYRAYFHETERKIGCLGE 599

Query: 576 RISNVLDILNDTLSSVIFPPK-------ENNEDSRTCPECHTH 611
            +   L+ +  TL+    P         E +   +  P+C   
Sbjct: 600 SLQRYLEFIASTLTGPDDPEGEPPLLGLEGSTSEKVGPKCGPK 642