HHsearch alignment for GI: 254780307 and conserved domain: COG1042

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion].
Probab=92.00  E-value=0.37  Score=26.28  Aligned_cols=115  Identities=19%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             EEEEECCCCH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHH
Q ss_conf             7999816677---899999999744998078999974765875600278158998779436-318847860687589999
Q gi|254780307|r    4 KVAVVGATGN---VGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQ   79 (335)
Q Consensus         4 kvaIiGatG~---vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~   79 (335)
T Consensus        12 svavigas~~~~~vg~~i~~nL~~~g--~g~i~PVnp~~~-----~v~G--~~ay~-s~~~lp~~~dlav~~v~~~~~~~   81 (598)
T COG1042          12 SIAVIGASERPGKLGYEILRNLLEYG--QGKIYPVNPKYD-----EVLG--VKAYT-SVADLPDAPDLAVIVVPAKVVPE   81 (598)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEECCCCCC-----CCCC--CCCCC-HHHHCCCCCCCEEEEECHHHHHH
T ss_conf             37887146875215799999998568--885574276532-----3366--31464-07557888770689852445689


Q ss_pred             HHHHHCCCCEE-EEECCCCHHCCCCCCCCCCCHHHHHHCCCCC-CCEECCCCCC
Q ss_conf             99750456517-9961451001121112364101111103334-3121267643
Q gi|254780307|r   80 MSPKIAANGCI-VIDNSSAWRYDSDVPLIVPEVNPQTISLASR-KNIIANPNCS  131 (335)
Q Consensus        80 ~~~~~~~~g~~-VIDlS~~~R~~~d~p~~lPein~~~i~~~~~-~~~VanPgC~  131 (335)
T Consensus        82 i~~~~~~kGv~~~i~is~gf~e~~~---~~~~~e~~~~~~a~~~~~rligPn~~  132 (598)
T COG1042          82 IVHELGEKGVKGAIVISAGFREAGE---EGMELEKELVEAARKYGMRIIGPNCL  132 (598)
T ss_pred             HHHHHCCCCCCEEEEECHHHHHHHH---HHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             9987200587358996245678877---67677889999988559638623324