HHsearch alignment for GI: 254780307 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.09 E-value=0.18 Score=28.14 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHH----HHHH
Q ss_conf 799981667789999999974499807899997476587560027815899877943631884786068758----9999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHA----VSSQ 79 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~----~s~~ 79 (335)
T Consensus 11 ~v~v~Gl-G~sG~s~a~~L~~~G~---~V~~~D~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~~~ 84 (457)
T PRK01390 11 TVALFGL-GGSGLATARALKAGGA---EVIAWDDNPDS--VAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKPHW 84 (457)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCHH--HHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 8999943-6999999999997899---79999399206--6899875983145541232038789999988865667319
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99750456517996
Q gi|254780307|r 80 MSPKIAANGCIVID 93 (335)
Q Consensus 80 ~~~~~~~~g~~VID 93 (335)
T Consensus 85 ~v~~a~~~gi~v~s 98 (457)
T PRK01390 85 TVDLARAAGVEVIG 98 (457)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999985991860