HHsearch alignment for GI: 254780307 and conserved domain: PRK03806

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.92  E-value=0.3  Score=26.85  Aligned_cols=86  Identities=17%  Similarity=0.275  Sum_probs=55.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C-EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf             179998166778999999997449980789999747658-7-56002781589987794363188478606875899999
Q gi|254780307|r    3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-G-TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM   80 (335)
Q Consensus         3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G-~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~   80 (335)
T Consensus         7 k~v~V~Gl-G~sG~s~~~~L~~~G~---~v~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~   81 (438)
T PRK03806          7 KNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRMTPPGLDKLPE-NVERHTGSLNDEWLLAADLIVASPGIALAHPS   81 (438)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHC-CCCEEECCCCHHHHCCCCEEEECCCCCCCCHH
T ss_conf             98999945-7888999999997899---6999989999005788645-88466577796680679999989978998989


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             9750456517996
Q gi|254780307|r   81 SPKIAANGCIVID   93 (335)
Q Consensus        81 ~~~~~~~g~~VID   93 (335)
T Consensus        82 ~~~a~~~~i~i~s   94 (438)
T PRK03806         82 LSAAADAGVEIVG   94 (438)
T ss_pred             HHHHHHCCCCEEE
T ss_conf             9999987994776