HHsearch alignment for GI: 254780307 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.92 E-value=0.3 Score=26.85 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=55.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C-EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 179998166778999999997449980789999747658-7-56002781589987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-G-TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G-~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
T Consensus 7 k~v~V~Gl-G~sG~s~~~~L~~~G~---~v~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~ 81 (438)
T PRK03806 7 KNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRMTPPGLDKLPE-NVERHTGSLNDEWLLAADLIVASPGIALAHPS 81 (438)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHC-CCCEEECCCCHHHHCCCCEEEECCCCCCCCHH
T ss_conf 98999945-7888999999997899---6999989999005788645-88466577796680679999989978998989
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 9750456517996
Q gi|254780307|r 81 SPKIAANGCIVID 93 (335)
Q Consensus 81 ~~~~~~~g~~VID 93 (335)
T Consensus 82 ~~~a~~~~i~i~s 94 (438)
T PRK03806 82 LSAAADAGVEIVG 94 (438)
T ss_pred HHHHHHCCCCEEE
T ss_conf 9999987994776