HHsearch alignment for GI: 254780307 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.86 E-value=0.00018 Score=46.42 Aligned_cols=92 Identities=25% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH-----HHCCCCEEEECCCH---
Q ss_conf 1799981667789999999974499807899997476587560027815899877943-----63188478606875---
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY-----DFSDTDICLMSAGH--- 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~-----~~~~~Divf~a~p~--- 74 (335)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa~~~~ 77 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGE---EVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAADYRL 77 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9499986777999999999997849---8999989998655652179779982079999999997178589761342344
Q ss_pred -------------HHHHHHHHHHCCCCE-EEEECCCC
Q ss_conf -------------899999975045651-79961451
Q gi|254780307|r 75 -------------AVSSQMSPKIAANGC-IVIDNSSA 97 (335)
Q Consensus 75 -------------~~s~~~~~~~~~~g~-~VIDlS~~ 97 (335)
T Consensus 78 ~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS~ 114 (328)
T TIGR03466 78 WAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSSV 114 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 6799899999999999999999997298743156335