HHsearch alignment for GI: 254780307 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.04 E-value=0.26 Score=27.25 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=64.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE--ECCCC--EEEEEECCHH-----HHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476587560--02781--5899877943-----6318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV--PFGKE--TIDVQDVKSY-----DFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i--~~~~~--~~~~~~~~~~-----~~~~~Divf~a~p 73 (335)
T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~-~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaAA 83 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 99999079779999999999972998-28999668640328898516898759996777788999976348889999462
Q ss_pred H-HH-----------------HHHHHHHHCCCCE-EEEECCCCHHCCCCCCCCCCCHHHHH
Q ss_conf 5-89-----------------9999975045651-79961451001121112364101111
Q gi|254780307|r 74 H-AV-----------------SSQMSPKIAANGC-IVIDNSSAWRYDSDVPLIVPEVNPQT 115 (335)
Q Consensus 74 ~-~~-----------------s~~~~~~~~~~g~-~VIDlS~~~R~~~d~p~~lPein~~~ 115 (335)
T Consensus 84 ~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka~~P~n~yGasK~~~E~ 144 (324)
T TIGR03589 84 LKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLYGATKLASDK 144 (324)
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 7767267769899999997999999999885554317862268888996743123676799