HHsearch alignment for GI: 254780307 and conserved domain: cd01078
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.50 E-value=0.12 Score=29.32 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=53.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE------ECCCCEEEEEEC-C----HHHHCCCCEEEEC
Q ss_conf 1799981667789999999974499807899997476587560------027815899877-9----4363188478606
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV------PFGKETIDVQDV-K----SYDFSDTDICLMS 71 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i------~~~~~~~~~~~~-~----~~~~~~~Divf~a 71 (335)
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~G---a~v~lv~R~~ek~~~~a~~i~~r~g~~-~~~~~~~~~~~~~~~l~~adiV~~a 104 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDLERAQKAADSLRARFGEG-VGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf 889998588578999999999839---979999587888999999999970987-3113578877899774669899964
Q ss_pred CCHHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 8758999999750-4565179961451
Q gi|254780307|r 72 AGHAVSSQMSPKI-AANGCIVIDNSSA 97 (335)
Q Consensus 72 ~p~~~s~~~~~~~-~~~g~~VIDlS~~ 97 (335)
T Consensus 105 ~aAGv~~~~~~~~~~k~l~Vv~DVNAv 131 (194)
T cd01078 105 GAAGVELLEKLAWAPKPLAVAADVNAV 131 (194)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 277788878888508886599865899