HHsearch alignment for GI: 254780307 and conserved domain: cd01489
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.65 E-value=0.2 Score=27.94 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=67.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEEE--------CCCCEEEEE----EC-
Q ss_conf 7999816677899999999744998078999-------------974765875600--------278158998----77-
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKVP--------FGKETIDVQ----DV- 57 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i~--------~~~~~~~~~----~~- 57 (335)
T Consensus 1 KVlvvGa-GglG~e~lk~La~~Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9899888-888999999999828985999719922610146682768221887099999999998888967998616766
Q ss_pred ----CHHHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCHHH
Q ss_conf ----943631884786068758999999750-45651799614510011211123641011
Q gi|254780307|r 58 ----KSYDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEVNP 113 (335)
Q Consensus 58 ----~~~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPein~ 113 (335)
T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~~~PlIegGt-~G~~Gqv~viiP~~T~ 139 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGT-TGFLGQVQVIKKGKTE 139 (312)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCEEEEEEEECCCCC
T ss_conf 86434988962999997667899999999999983997597202-4641379998489756