HHsearch alignment for GI: 254780307 and conserved domain: pfam03447
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=97.15 E-value=0.0025 Score=39.41 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHC-CCCEEEEEEEECCCC--CCEEEECCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHHHHHHHCCC
Q ss_conf 77899999999744-998078999974765--875600278158998779436-31884786068758999999750456
Q gi|254780307|r 12 GNVGREMLNIICER-GFPISEVVALASERS--AGTKVPFGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQMSPKIAAN 87 (335)
Q Consensus 12 G~vG~el~~lL~~~-~~p~~~l~~~~s~~~--~G~~i~~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~~~~~~~~~ 87 (335)
T Consensus 3 G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~~-~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~~~~~aL~~ 81 (116)
T pfam03447 3 GAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAALL-GDEPVTLDLDDLVADPRPDVVVECASSEAVAEYVLKALKA 81 (116)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCC-CCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 702899999999492035679999984783432321246-6671577999996188998999889948999999999987
Q ss_pred CEEEEECCCC
Q ss_conf 5179961451
Q gi|254780307|r 88 GCIVIDNSSA 97 (335)
Q Consensus 88 g~~VIDlS~~ 97 (335)
T Consensus 82 GkhVVTaNK~ 91 (116)
T pfam03447 82 GKHVVTASKG 91 (116)
T ss_pred CCEEEEECHH
T ss_conf 9989990788