HHsearch alignment for GI: 254780307 and conserved domain: smart00859
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.97 E-value=2e-30 Score=203.80 Aligned_cols=112 Identities=46% Similarity=0.668 Sum_probs=94.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEECCCCE-----EEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 79998166778999999997449980789999-7476587560027815-----89987794363188478606875899
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVPFGKET-----IDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~~~~~~-----~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
T Consensus 1 kVaIvGatGyvG~eli~lL~~h--p~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHH
T ss_conf 9899894519999999999858--99745777740465897578859664577350565331100179999993882788
Q ss_pred HHHHH---HHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHC
Q ss_conf 99997---50456517996145100112111236410111110
Q gi|254780307|r 78 SQMSP---KIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTIS 117 (335)
Q Consensus 78 ~~~~~---~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~ 117 (335)
T Consensus 79 ~~~~~~~~~~~~~g~~VIDlSadfRl~~~~~~~lPEvN~~~i~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHC
T ss_conf 9999988988756987986847752789986699871988954