RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (335 letters) >gnl|CDD|184874 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional. Length = 334 Score = 544 bits (1404), Expect = e-155 Identities = 199/333 (59%), Positives = 258/333 (77%), Gaps = 3/333 (0%) Query: 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDF 62 + VAVVGATG VGREMLNI+ ER FP+ ++ LAS RSAG ++ F + + V+D+ ++DF Sbjct: 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF 61 Query: 63 SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRK 122 S DI L SAG +VS + +PK AA G +VIDNSSA+R D DVPL+VPEVNP+ ++ +K Sbjct: 62 SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKK 121 Query: 123 NIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKT 182 IIANPNCSTIQ+VVALKPLHD A IKRVVV+TYQ+VSGAGK G++EL QT+A L Sbjct: 122 GIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAV 181 Query: 183 --IENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARVPVF 239 +E + F K IAFNVIPHIDVFMD G TKEE K++ ET+KIL DP++KVS T RVPVF Sbjct: 182 DPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSATCVRVPVF 241 Query: 240 IGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRK 299 GH+ESVNIEFE+ IS+++A + ++ G ++VD P+ Y TP+E++ +D FV RIRK Sbjct: 242 TGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRIRK 301 Query: 300 DPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 D T+++GL+LW+V++NLRKGAALNAVQIAEL+ Sbjct: 302 DLTVENGLHLWVVSDNLRKGAALNAVQIAELLI 334 >gnl|CDD|162290 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. Length = 339 Score = 409 bits (1053), Expect = e-115 Identities = 190/338 (56%), Positives = 239/338 (70%), Gaps = 8/338 (2%) Query: 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSD 64 VA+VGATG VG+EML I+ ER FPI ++V LAS+RSAG KV F + ++V + K F Sbjct: 2 VAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEG 61 Query: 65 TDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124 DI L SAG +VS + +PK A G IVIDN+SA+R D DVPL+VPEVN + + + K I Sbjct: 62 IDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGI 121 Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIE 184 IANPNCSTIQ+VV LKPLHD A IKRVVV+TYQ+VSGAG G++EL QTKA L + Sbjct: 122 IANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENN 181 Query: 185 NRV-------FTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARV 236 + F IAFN IPHID F D G TKEE K+L ET+KI+ P+ KVS T RV Sbjct: 182 PYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRV 241 Query: 237 PVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSR 296 PVF GH+ESVNIEFEK+IS +D + + G +++D P N Y TP+E++ D VFV R Sbjct: 242 PVFTGHSESVNIEFEKEISPEDVRELLKNAPGVVLIDDPSGNLYPTPLEAVGEDEVFVGR 301 Query: 297 IRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 IRKD + +GL+LW+VA+NLRKGAALN+VQIAEL+ + Sbjct: 302 IRKDLSDDNGLHLWVVADNLRKGAALNSVQIAELLIKN 339 >gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase. Length = 344 Score = 337 bits (867), Expect = 2e-93 Identities = 142/338 (42%), Positives = 206/338 (60%), Gaps = 7/338 (2%) Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60 VA+VG TG VG+E L+++ +R FP S + LAS RSAG KV F V+++ Sbjct: 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTED 65 Query: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQT---IS 117 F DI L SAG ++S + P G +V+DNSSA+R + VPL++PEVNP+ I Sbjct: 66 SFDGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIK 125 Query: 118 LASRKN-IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKA 176 L K +IANPNCSTI ++A+ PLH A +KR+VV+TYQ+ SGAG ++EL QT+ Sbjct: 126 LGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTRE 185 Query: 177 FLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAAR 235 L K +F + AFN+ H + G +EE K++ ET+KI D ++KV+ T R Sbjct: 186 VLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTATCIR 245 Query: 236 VPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVS 295 VPV HAES+N++FEK + A + + G ++D N + TP+++ +D V V Sbjct: 246 VPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKDDVAVG 305 Query: 296 RIRKDPTL--KSGLNLWIVANNLRKGAALNAVQIAELV 331 RIR+D + GL++++ + +RKGAALNAVQIAEL+ Sbjct: 306 RIRQDISQDGNKGLDIFVCGDQIRKGAALNAVQIAELL 343 >gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase; Provisional. Length = 347 Score = 269 bits (690), Expect = 4e-73 Identities = 152/342 (44%), Positives = 215/342 (62%), Gaps = 11/342 (3%) Query: 3 FKVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD 61 + VAVVGATG VG++++ ++ E F I+EV L+S+RSAG V F I +Q+ K Sbjct: 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS 65 Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASR 121 F DI SAG VS Q + ++G IVIDN+S +R DVPL+VPEVN T L Sbjct: 66 FEGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHT--LKEH 123 Query: 122 KNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKK 181 K IIA PNCS +Q+V AL+P+ + ++R++V+TYQ+VSG+G I EL Q K+ LA + Sbjct: 124 KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGE 183 Query: 182 TIENRVFTKN-------IAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTA 233 +E+ + IAFNV+P +D+F D T EE K++ ET+KIL DPN+K++ T Sbjct: 184 EVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATC 243 Query: 234 ARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVF 293 RVPV GH+ESV IE EK+ ++ + + + G I+ D P + Y P+ + + F Sbjct: 244 VRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTF 303 Query: 294 VSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335 V RIRKDP +G +LWIV++NL KGAA N+VQIAE + +E Sbjct: 304 VGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVEEG 345 >gnl|CDD|181205 PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional. Length = 336 Score = 234 bits (598), Expect = 3e-62 Identities = 121/333 (36%), Positives = 191/333 (57%), Gaps = 9/333 (2%) Query: 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSD 64 +A++GATG VG +L ++ ER FP+ E+ ALASE SAG + FG +++ VQD +D+S Sbjct: 7 IALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQ 66 Query: 65 TDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124 + AG S+ + + GC+VID+S + + DVPL+VPEVNP ++ +NI Sbjct: 67 AQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNI 126 Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIE 184 IA + T QL+ A+KPL D A + R+ VT S S GK +D L Q+ L IE Sbjct: 127 IAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIE 186 Query: 185 NRVFTKNIAFNVIPHI-DVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARVPVFIGH 242 F + +AFN++P + D GS +EE +++ + +KIL D + +S + + PVF GH Sbjct: 187 EGFFGRQLAFNMLPLLPD---SEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGH 243 Query: 243 AESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIR-RDLVFVSRIRKDP 301 A+ V+ E + ++ ++A A+ + + IV+ ++N+Y T V + + +R D Sbjct: 244 AQMVHFEALRPLAAEEARDALEQGED-IVLS--EENDYPTQVGDASGNPHLSIGCVRNDY 300 Query: 302 TLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 + L W VA+N+R G AL AV+ AE + QE Sbjct: 301 GMPEQLQFWSVADNVRFGGALMAVKTAEKLVQE 333 >gnl|CDD|168165 PRK05671, PRK05671, aspartate-semialdehyde dehydrogenase; Reviewed. Length = 336 Score = 228 bits (582), Expect = 2e-60 Identities = 126/331 (38%), Positives = 193/331 (58%), Gaps = 6/331 (1%) Query: 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD 61 +AVVGATG VG ++ I+ ER FP+ + LAS SAG VPF + + V++V S+D Sbjct: 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD 63 Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASR 121 FS + +AG AVS + K A GC VID S A + P +VPEVN + ++ + Sbjct: 64 FSQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALP-SAQAPNVVPEVNAERLASLAA 122 Query: 122 KNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKK 181 ++++P+ S + L VAL PL L I+RV VT +VS G++G+ EL QT L + Sbjct: 123 PFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNAR 182 Query: 182 TIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTAARVPVFI 240 +E R F + +AFN++ + G T E +++ E +++L P +K+S T +VPVF Sbjct: 183 PLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFF 242 Query: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVE-SIRRDLVFVSRIRK 299 G + SV ++ + + AA+ + G +V+ D Y TPV ++ +D+V+V R+R Sbjct: 243 GDSLSVALQSAAPVDLAAVNAALEAAPGIELVEAGD---YPTPVGDAVGQDVVYVGRVRA 299 Query: 300 DPTLKSGLNLWIVANNLRKGAALNAVQIAEL 330 LNLW+ ++N+RKGAALNAVQ+AEL Sbjct: 300 GVDDPCQLNLWLTSDNVRKGAALNAVQVAEL 330 >gnl|CDD|181530 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed. Length = 349 Score = 209 bits (535), Expect = 8e-55 Identities = 127/384 (33%), Positives = 180/384 (46%), Gaps = 97/384 (25%) Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTK----------VPFGK 49 M KV ++GATG VG+ + ++ P EV AL ASERSAG P + Sbjct: 2 MKLKVGILGATGMVGQRFVQLL--ANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPE 59 Query: 50 ETIDVQDVKSYD---FSDTDI--CLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDV 104 E D++ V S D D DI + + V+ ++ + A G V N+SA R D DV Sbjct: 60 EVADME-VVSTDPEAVDDVDIVFSALPSD--VAGEVEEEFAKAGKPVFSNASAHRMDPDV 116 Query: 105 PLIVPEVNPQTISL--ASRKN------IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTY 156 PL++PEVNP+ + L RK I+ NPNCSTI LV+ALKPL D I+RV VTT Sbjct: 117 PLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMDFG-IERVHVTTM 175 Query: 157 QSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVL 216 Q++SGAG G+ + +I NVIP+I EE K+ Sbjct: 176 QAISGAGYPGVPSM--------------------DIVDNVIPYIG--------GEEEKIE 207 Query: 217 VETQKIL---------DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK 267 ET KIL + +S T RVPV GH E+V ++F++D+ ++ A+ K Sbjct: 208 KETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFK 267 Query: 268 GC--------------IVVDKPDKNEYITPVESIRRDL-------VFVSRIRKDPTLKSG 306 G I+ ++PD+ P R D V V R+R+D Sbjct: 268 GLPQELGLPSAPKKPIILFEEPDR-----P--QPRLDRDAGDGMAVSVGRLREDGIFD-- 318 Query: 307 LNLWIVANNLRKGAALNAVQIAEL 330 + ++ +N +GAA +V AEL Sbjct: 319 IKFVVLGHNTVRGAAGASVLNAEL 342 >gnl|CDD|162144 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. Length = 341 Score = 181 bits (461), Expect = 2e-46 Identities = 119/375 (31%), Positives = 172/375 (45%), Gaps = 86/375 (22%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTK------------VPFGKE 50 +VAV+GATG VG++ + ++ P E+ + AS RSAG + +P Sbjct: 2 RVAVLGATGLVGQKFVKLL--AKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVR 59 Query: 51 TIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPE 110 + + + + D DI + V+ ++ PK+A G V N+S R D DVPLI+PE Sbjct: 60 DLPIVEPEPVASKDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPE 119 Query: 111 VNPQTISLASRKN-------IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAG 163 VN + L + I+ NPNC+T L +ALKPL D IK+V VTT Q+VSGAG Sbjct: 120 VNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAG 179 Query: 164 KKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL 223 G+ + +I N+IPHI EE K+ ET+KIL Sbjct: 180 YPGVPSM--------------------DILDNIIPHI--------GGEEEKIERETRKIL 211 Query: 224 ---------DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKG------ 268 VS T RVPV GH ESV++EF+K I++ A+ +G Sbjct: 212 GKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLG 271 Query: 269 --------CIVVDKPDKNEYITPVESIRRDL-----VFVSRIRKDPTLKSGLNLWIVANN 315 IV D+ D+ P + RD V V R+R++ L ++ +N Sbjct: 272 LPSAPEKPIIVRDEEDR-----PQPRLDRDAGGGMAVTVGRLREEG---GSLKYVVLGHN 323 Query: 316 LRKGAALNAVQIAEL 330 L +GAA + AEL Sbjct: 324 LVRGAAGATLLNAEL 338 >gnl|CDD|129092 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. Length = 122 Score = 119 bits (300), Expect = 1e-27 Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 11/122 (9%) Query: 4 KVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPF-----GKETIDVQDV 57 KVA+VGATG VG+E+L ++ F + + A S RSAG +V E + + Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAA--SARSAGKRVSEAGPHLKGEVVLELEP 58 Query: 58 KSYDFSDTDICLMSAGHAVSSQMSP---KIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQ 114 + ++ DI ++ H VS +++P K A G VID SSA+R D DVP +PEVNP+ Sbjct: 59 EDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPE 118 Query: 115 TI 116 I Sbjct: 119 AI 120 >gnl|CDD|130806 TIGR01745, asd_gamma, aspartate-semialdehyde dehydrogenase, gamma-proteobacterial. Length = 366 Score = 95.4 bits (237), Expect = 2e-20 Identities = 93/354 (26%), Positives = 151/354 (42%), Gaps = 36/354 (10%) Query: 4 KVAVVGATGNVGREMLN-IICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD- 61 V +VG G VG ++ + ER F V ++ + FG T +QD D Sbjct: 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDA 61 Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTISLA 119 DI + G ++++ PK+ +G ID +S+ R D +I+ VN I+ Sbjct: 62 LKALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG 121 Query: 120 SRKNI--IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAF 177 I NC+ ++++L L +++ V V TYQ+ SG G + + ELL Q Sbjct: 122 LNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHL 181 Query: 178 -------LAKKT-----IENRV-------------FTKNIAFNVIPHIDVFMDGGSTKEE 212 LA + IE +V F +A ++IP ID +D G ++EE Sbjct: 182 YGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREE 241 Query: 213 WKVLVETQKILDPN--IKVSCTAARVPVFIGHAESVNIEFEKDISIKDA---VAAINKSK 267 WK ET KIL + I V R+ H+++ I+ +KD+S++ + A N Sbjct: 242 WKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNPWV 301 Query: 268 GCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAA 321 + D+ +TP + V R+RK L+ + V + L GAA Sbjct: 302 KVVPNDREITMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAA 355 >gnl|CDD|180636 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed. Length = 369 Score = 94.9 bits (237), Expect = 2e-20 Identities = 94/336 (27%), Positives = 147/336 (43%), Gaps = 41/336 (12%) Query: 3 FKVAVVGATGNVGREMLN-IICERGFPISEVVALASERSAGTKVP-FGKETIDVQDVKSY 60 KV VG G VG ++ ++ E F + E V S AG P FG + +QD Sbjct: 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQAGGAAPSFGGKEGTLQDAFDI 60 Query: 61 D-FSDTDICLMSAGHAVSSQMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTI- 116 D DI + G ++++ PK+ A G ID +S R D +I+ VN I Sbjct: 61 DALKKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVID 120 Query: 117 -SLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQT- 174 +LA+ NC+ +++AL L +++ V V TYQ+ SGAG + + ELL Q Sbjct: 121 DALANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMG 180 Query: 175 ------KAFL-----AKKTIENRVF---------TKN----IAFNVIPHIDVFMDGGSTK 210 L A I+ +V T N +A ++IP ID + G ++ Sbjct: 181 ALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSR 240 Query: 211 EEWKVLVETQKIL---DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK 267 EEWK ET KIL I V RV H++++ I+ +KD+ + + + Sbjct: 241 EEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILAAHN 300 Query: 268 GCIVV---DKPDKNEYITPVESIRRDL-VFVSRIRK 299 + V D+ +TP ++ L + V R+RK Sbjct: 301 PWVKVVPNDREATMRELTPA-AVTGTLTIPVGRLRK 335 >gnl|CDD|179024 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated. Length = 343 Score = 81.3 bits (202), Expect = 4e-16 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 36/194 (18%) Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV----PF--GKETIDV 54 M KV +VGA+G G E+L ++ P E+VA+ S SAG + P G + + Sbjct: 1 MMIKVGIVGASGYTGGELLRLLL--NHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVL 58 Query: 55 QDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS------------ 102 + + + D+ ++ H VS ++P++ G VID S+ +R Sbjct: 59 EPLDPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEH 118 Query: 103 -DVPLIV------PEVNPQTISLASRKNIIANPNC--STIQLVVALKPLHDLAMIK--RV 151 L+ PE+N + I A IANP C + L AL PL +I + Sbjct: 119 AAPELLKEAVYGLPELNREEIKGARL---IANPGCYPTASLL--ALAPLLKAGLIDPDSI 173 Query: 152 VVTTYQSVSGAGKK 165 ++ VSGAG+K Sbjct: 174 IIDAKSGVSGAGRK 187 >gnl|CDD|180741 PRK06901, PRK06901, aspartate-semialdehyde dehydrogenase; Provisional. Length = 322 Score = 80.5 bits (199), Expect = 6e-16 Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 51/343 (14%) Query: 18 MLNIICERGFPISEVVALASERS--------AGTKVPFGKE-----------TIDVQDVK 58 LNI F +SE + A E+S PFG+E I ++V+ Sbjct: 3 TLNIAIAAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVE 62 Query: 59 SYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISL 118 DF+ + AG ++ + A GCIVID ++VP++VP VN + ++ Sbjct: 63 WADFNY----VFFAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAE 118 Query: 119 ASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFL 178 ++NI++ P+ QL +AL P + ++ VT+ S + + +L QT L Sbjct: 119 LRQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLL 178 Query: 179 AKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNI-KVSCTAARVP 237 ++ + +AF+V P + ++ QKI P + V+ + +VP Sbjct: 179 NGIPLDEE--EQRLAFDVFP-----------ANAQNLELQLQKIF-PQLENVTFHSIQVP 224 Query: 238 VFIGHAESVNI--EFEKDI-SIKDAVAAINKSKGCIVVDKPDKNEYITPV---ESIRRDL 291 VF G A+ V E+E DI S N ++ +K ITPV E+ + Sbjct: 225 VFYGLAQMVTALSEYELDIESQLAEWQQNN-----LLRYHEEK--LITPVLNGENENGEE 277 Query: 292 VFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 I + +++G+ W VA+ R A AV++ EL+ Q+ Sbjct: 278 SVKLHISQLSAVENGVQFWSVADEQRFNLAFLAVKLLELIYQQ 320 >gnl|CDD|162559 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. Length = 346 Score = 70.7 bits (174), Expect = 5e-13 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 40/194 (20%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKV--------PFGKETIDV 54 KVA+VGA+G G E+L ++ P E+ L +S SAG V ++ Sbjct: 2 KVAIVGASGYTGGELLRLL--LNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEP 59 Query: 55 QDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS------------ 102 D + D D+ ++ H VS++++P++ A G VID S+ +R Sbjct: 60 IDEEEIAE-DADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEH 118 Query: 103 -DVPLI------VPEVNPQTISLASRKNIIANPNC--STIQLVVALKPL--HDLAMIKRV 151 L+ +PE++ + I A +IANP C + L AL PL L + Sbjct: 119 AGPELLQEAVYGLPELHREEIKGA---RLIANPGCYPTATLL--ALAPLLKEGLIDPTSI 173 Query: 152 VVTTYQSVSGAGKK 165 +V VSGAG+K Sbjct: 174 IVDAKSGVSGAGRK 187 >gnl|CDD|162560 TIGR01851, argC_other, N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. Length = 310 Score = 41.0 bits (96), Expect = 4e-04 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 10/115 (8%) Query: 67 ICL--MSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124 +CL +A AVS +P N CI ID S+A+R D PE+ P Sbjct: 55 LCLPDDAAREAVSLVDNP----NTCI-IDASTAYRTADDWAYGFPELAPGQREKIRNSKR 109 Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVS---GAGKKGIDELLAQTKA 176 IANP C + ++PL + ++ T +VS G GK I + + Sbjct: 110 IANPGCYPTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSAD 164 >gnl|CDD|178552 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate reductase. Length = 381 Score = 41.0 bits (96), Expect = 4e-04 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 37/190 (19%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQD------V 57 ++ V+GA+G G E+ ++ P E+ + ++R AG + QD V Sbjct: 40 RIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAV 97 Query: 58 KSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLI---------- 107 K DFSD D H ++Q K ++D S+ +R Sbjct: 98 KDADFSDVDAVFCCLPHG-TTQEIIKALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAP 156 Query: 108 ---------VPEVNPQTISLASRKNIIANPNC--STIQLVVALKPLHDLAMIKR--VVVT 154 + E+ + I A +ANP C + IQL L PL +I+ +++ Sbjct: 157 ELQKEAVYGLTELQREEIKSARL---VANPGCYPTGIQLP--LVPLVKAGLIEPDNIIID 211 Query: 155 TYQSVSGAGK 164 VSGAG+ Sbjct: 212 AKSGVSGAGR 221 >gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase; Provisional. Length = 341 Score = 35.2 bits (82), Expect = 0.026 Identities = 13/52 (25%), Positives = 30/52 (57%) Query: 225 PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPD 276 P++ ++ A +VP + H SVN+E +K ++ ++ + A+ + ++V D Sbjct: 203 PDLDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASD 254 >gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional. Length = 257 Score = 34.0 bits (79), Expect = 0.061 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFS 63 KVAV GA+G +GRE++ + E+VA A +R V G + + D + Sbjct: 3 KVAVAGASGRMGRELIEAVEA--AEDLELVA-AVDRPGSPLVGQGALGVAITDDLEAVLA 59 Query: 64 DTDI 67 D D+ Sbjct: 60 DADV 63 >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase. Length = 390 Score = 32.8 bits (75), Expect = 0.11 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQ----DVKS 59 V VVGATG +G+ ++ + RG+ VVA+A E+S G + GKE + +V Sbjct: 62 TVLVVGATGYIGKFVVRELVRRGYN---VVAVAREKS-GIRGKNGKEDTKKELPGAEVVF 117 Query: 60 YDFSDTD 66 D +D D Sbjct: 118 GDVTDAD 124 >gnl|CDD|183344 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional. Length = 313 Score = 32.8 bits (76), Expect = 0.12 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%) Query: 84 IAANGCIVIDNSSAWRYDSDVPLIVPEVNP---QTISLASRKNIIANPNCSTIQLVVALK 140 I VID S+A R PE+ P + I+ A R +ANP C + L+ Sbjct: 70 IDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKR---VANPGCYPTGAIALLR 126 Query: 141 PLHDLAMIKRVVVTTYQSV---SGAGKKGIDE 169 PL D ++ + +V SG GK I Sbjct: 127 PLVDAGLLPADYPVSINAVSGYSGGGKAMIAA 158 >gnl|CDD|130609 TIGR01546, GAPDH-II_archae, glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. Length = 333 Score = 31.0 bits (70), Expect = 0.44 Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 225 PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPV 284 PN+ + A VP + H S+ +E +K ++ D + + + ++ +K E + Sbjct: 200 PNLNIETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPRVLLFEKKKGFESTAEL 259 Query: 285 ESIRRDL 291 RDL Sbjct: 260 IEFARDL 266 >gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612 Score = 29.7 bits (66), Expect = 1.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 229 VSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAIN 264 V C AR P GH IE+ S +A+A++N Sbjct: 232 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 267 >gnl|CDD|130595 TIGR01532, E4PD_g-proteo, D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. Length = 325 Score = 29.5 bits (66), Expect = 1.2 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Query: 107 IVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQS 158 IV VN Q L++ I++N +C+T +V +K L D I+ +TT S Sbjct: 131 IVYGVNQQD--LSAEHTIVSNASCTTNCIVPLIKLLDDAIGIESGTITTIHS 180 >gnl|CDD|180973 PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated. Length = 406 Score = 28.9 bits (65), Expect = 1.8 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 14/105 (13%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVK----- 58 VAV GA+G +G+ +L + ++G ++VVAL S S + E + V+ + Sbjct: 180 TVAVTGASGTLGQALLKELHQQG---AKVVALTS-NSDKITLEINGEDLPVKTLHWQVGQ 235 Query: 59 ----SYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWR 99 + DI +++ G V + +P+ A N ++ SAWR Sbjct: 236 EAALAELLEKVDILIINHGINVHGERTPE-AINKSYEVNTFSAWR 279 >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional. Length = 403 Score = 28.5 bits (64), Expect = 2.4 Identities = 12/23 (52%), Positives = 17/23 (73%) Query: 4 KVAVVGATGNVGREMLNIICERG 26 K+ VV + GN+ +MLNII E+G Sbjct: 297 KIGVVLSGGNIDVQMLNIIIEKG 319 >gnl|CDD|178299 PLN02696, PLN02696, 1-deoxy-D-xylulose-5-phosphate reductoisomerase. Length = 454 Score = 27.4 bits (61), Expect = 5.2 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 7/43 (16%) Query: 4 KVAVVGATGNVGREMLNIICERGFPIS-EVVALASERSAGTKV 45 ++++G+TG++G + L+I+ E P +VVALA AG+ V Sbjct: 59 PISLLGSTGSIGTQTLDIVAE--NPDKFKVVALA----AGSNV 95 >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 Score = 27.4 bits (61), Expect = 5.6 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%) Query: 179 AKK-TIENRVFTKNIAF-------NVIPHIDVFMDGGSTKEEWKVLVET 219 AK+ IE R F+K F V+P + DG S ++W+ T Sbjct: 234 AKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCT 282 >gnl|CDD|163033 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. Length = 323 Score = 27.1 bits (61), Expect = 6.3 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVA 34 V V GATG VG + I+ + G+ EVVA Sbjct: 148 PVLVTGATGGVGSLAVAILSKLGY---EVVA 175 >gnl|CDD|177881 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B. Length = 442 Score = 27.2 bits (60), Expect = 6.4 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 102 SDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161 +D+P V VN NI++N +C+T L +K L + I + +TT S +G Sbjct: 202 ADIPTYVVGVNEDDYD-HEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTG 260 >gnl|CDD|184944 PRK14982, PRK14982, acyl-ACP reductase; Provisional. Length = 340 Score = 26.9 bits (60), Expect = 7.7 Identities = 9/12 (75%), Positives = 11/12 (91%) Query: 4 KVAVVGATGNVG 15 VAVVGATG++G Sbjct: 157 TVAVVGATGDIG 168 >gnl|CDD|173524 PTZ00325, PTZ00325, malate dehydrogenase; Provisional. Length = 321 Score = 26.9 bits (60), Expect = 8.5 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 2 TFKVAVVGATGNVG 15 FKVAV+GA G +G Sbjct: 8 MFKVAVLGAAGGIG 21 >gnl|CDD|179550 PRK03187, tgl, transglutaminase; Provisional. Length = 272 Score = 26.9 bits (60), Expect = 8.7 Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 16/35 (45%) Query: 98 WRYDSDVPLIV----------------PEVNPQTI 116 W YD D+ LI P+ NP T Sbjct: 150 WHYDRDLKLITKTGGDFLPGDCVYFKNPDFNPATP 184 >gnl|CDD|162405 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. Length = 327 Score = 26.9 bits (60), Expect = 8.8 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 103 DVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161 D P IV VN R II+N +C+T L K L + I ++TT S + Sbjct: 127 DAPTIVYGVNHDEYDPEER--IISNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTN 183 >gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase. Length = 421 Score = 26.7 bits (59), Expect = 9.4 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 30/174 (17%) Query: 90 IVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIK 149 +VI SA D P+ V VN +T NI++N +C+T L K +H+ I Sbjct: 202 VVISAPSA-----DAPMFVVGVNEKTYK--PNMNIVSNASCTTNCLAPLAKVVHEEFGIL 254 Query: 150 RVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGST 209 ++TT + + A +K +D ++++ + + N+IP G+ Sbjct: 255 EGLMTTVHATT-ATQKTVD-----------GPSMKDWRGGRGASQNIIPS-----STGAA 297 Query: 210 KEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAI 263 K KVL E N K++ A RVP + EK S +D AAI Sbjct: 298 KAVGKVLPEL------NGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAI 345 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.133 0.375 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,305,668 Number of extensions: 336421 Number of successful extensions: 763 Number of sequences better than 10.0: 1 Number of HSP's gapped: 721 Number of HSP's successfully gapped: 48 Length of query: 335 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 241 Effective length of database: 3,963,321 Effective search space: 955160361 Effective search space used: 955160361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.8 bits)