RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(335 letters)
>gnl|CDD|184874 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 544 bits (1404), Expect = e-155
Identities = 199/333 (59%), Positives = 258/333 (77%), Gaps = 3/333 (0%)
Query: 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDF 62
+ VAVVGATG VGREMLNI+ ER FP+ ++ LAS RSAG ++ F + + V+D+ ++DF
Sbjct: 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF 61
Query: 63 SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRK 122
S DI L SAG +VS + +PK AA G +VIDNSSA+R D DVPL+VPEVNP+ ++ +K
Sbjct: 62 SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKK 121
Query: 123 NIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKT 182
IIANPNCSTIQ+VVALKPLHD A IKRVVV+TYQ+VSGAGK G++EL QT+A L
Sbjct: 122 GIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAV 181
Query: 183 --IENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARVPVF 239
+E + F K IAFNVIPHIDVFMD G TKEE K++ ET+KIL DP++KVS T RVPVF
Sbjct: 182 DPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSATCVRVPVF 241
Query: 240 IGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRK 299
GH+ESVNIEFE+ IS+++A + ++ G ++VD P+ Y TP+E++ +D FV RIRK
Sbjct: 242 TGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRIRK 301
Query: 300 DPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332
D T+++GL+LW+V++NLRKGAALNAVQIAEL+
Sbjct: 302 DLTVENGLHLWVVSDNLRKGAALNAVQIAELLI 334
>gnl|CDD|162290 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978.
Length = 339
Score = 409 bits (1053), Expect = e-115
Identities = 190/338 (56%), Positives = 239/338 (70%), Gaps = 8/338 (2%)
Query: 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSD 64
VA+VGATG VG+EML I+ ER FPI ++V LAS+RSAG KV F + ++V + K F
Sbjct: 2 VAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEG 61
Query: 65 TDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124
DI L SAG +VS + +PK A G IVIDN+SA+R D DVPL+VPEVN + + + K I
Sbjct: 62 IDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGI 121
Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIE 184
IANPNCSTIQ+VV LKPLHD A IKRVVV+TYQ+VSGAG G++EL QTKA L +
Sbjct: 122 IANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENN 181
Query: 185 NRV-------FTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARV 236
+ F IAFN IPHID F D G TKEE K+L ET+KI+ P+ KVS T RV
Sbjct: 182 PYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRV 241
Query: 237 PVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSR 296
PVF GH+ESVNIEFEK+IS +D + + G +++D P N Y TP+E++ D VFV R
Sbjct: 242 PVFTGHSESVNIEFEKEISPEDVRELLKNAPGVVLIDDPSGNLYPTPLEAVGEDEVFVGR 301
Query: 297 IRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334
IRKD + +GL+LW+VA+NLRKGAALN+VQIAEL+ +
Sbjct: 302 IRKDLSDDNGLHLWVVADNLRKGAALNSVQIAELLIKN 339
>gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase.
Length = 344
Score = 337 bits (867), Expect = 2e-93
Identities = 142/338 (42%), Positives = 206/338 (60%), Gaps = 7/338 (2%)
Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60
VA+VG TG VG+E L+++ +R FP S + LAS RSAG KV F V+++
Sbjct: 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTED 65
Query: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQT---IS 117
F DI L SAG ++S + P G +V+DNSSA+R + VPL++PEVNP+ I
Sbjct: 66 SFDGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIK 125
Query: 118 LASRKN-IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKA 176
L K +IANPNCSTI ++A+ PLH A +KR+VV+TYQ+ SGAG ++EL QT+
Sbjct: 126 LGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTRE 185
Query: 177 FLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAAR 235
L K +F + AFN+ H + G +EE K++ ET+KI D ++KV+ T R
Sbjct: 186 VLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTATCIR 245
Query: 236 VPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVS 295
VPV HAES+N++FEK + A + + G ++D N + TP+++ +D V V
Sbjct: 246 VPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKDDVAVG 305
Query: 296 RIRKDPTL--KSGLNLWIVANNLRKGAALNAVQIAELV 331
RIR+D + GL++++ + +RKGAALNAVQIAEL+
Sbjct: 306 RIRQDISQDGNKGLDIFVCGDQIRKGAALNAVQIAELL 343
>gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 347
Score = 269 bits (690), Expect = 4e-73
Identities = 152/342 (44%), Positives = 215/342 (62%), Gaps = 11/342 (3%)
Query: 3 FKVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD 61
+ VAVVGATG VG++++ ++ E F I+EV L+S+RSAG V F I +Q+ K
Sbjct: 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS 65
Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASR 121
F DI SAG VS Q + ++G IVIDN+S +R DVPL+VPEVN T L
Sbjct: 66 FEGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHT--LKEH 123
Query: 122 KNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKK 181
K IIA PNCS +Q+V AL+P+ + ++R++V+TYQ+VSG+G I EL Q K+ LA +
Sbjct: 124 KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGE 183
Query: 182 TIENRVFTKN-------IAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTA 233
+E+ + IAFNV+P +D+F D T EE K++ ET+KIL DPN+K++ T
Sbjct: 184 EVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATC 243
Query: 234 ARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVF 293
RVPV GH+ESV IE EK+ ++ + + + G I+ D P + Y P+ + + F
Sbjct: 244 VRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTF 303
Query: 294 VSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335
V RIRKDP +G +LWIV++NL KGAA N+VQIAE + +E
Sbjct: 304 VGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVEEG 345
>gnl|CDD|181205 PRK08040, PRK08040, putative semialdehyde dehydrogenase;
Provisional.
Length = 336
Score = 234 bits (598), Expect = 3e-62
Identities = 121/333 (36%), Positives = 191/333 (57%), Gaps = 9/333 (2%)
Query: 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSD 64
+A++GATG VG +L ++ ER FP+ E+ ALASE SAG + FG +++ VQD +D+S
Sbjct: 7 IALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQ 66
Query: 65 TDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124
+ AG S+ + + GC+VID+S + + DVPL+VPEVNP ++ +NI
Sbjct: 67 AQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNI 126
Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIE 184
IA + T QL+ A+KPL D A + R+ VT S S GK +D L Q+ L IE
Sbjct: 127 IAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIE 186
Query: 185 NRVFTKNIAFNVIPHI-DVFMDGGSTKEEWKVLVETQKIL-DPNIKVSCTAARVPVFIGH 242
F + +AFN++P + D GS +EE +++ + +KIL D + +S + + PVF GH
Sbjct: 187 EGFFGRQLAFNMLPLLPD---SEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGH 243
Query: 243 AESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIR-RDLVFVSRIRKDP 301
A+ V+ E + ++ ++A A+ + + IV+ ++N+Y T V + + +R D
Sbjct: 244 AQMVHFEALRPLAAEEARDALEQGED-IVLS--EENDYPTQVGDASGNPHLSIGCVRNDY 300
Query: 302 TLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334
+ L W VA+N+R G AL AV+ AE + QE
Sbjct: 301 GMPEQLQFWSVADNVRFGGALMAVKTAEKLVQE 333
>gnl|CDD|168165 PRK05671, PRK05671, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 336
Score = 228 bits (582), Expect = 2e-60
Identities = 126/331 (38%), Positives = 193/331 (58%), Gaps = 6/331 (1%)
Query: 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD 61
+AVVGATG VG ++ I+ ER FP+ + LAS SAG VPF + + V++V S+D
Sbjct: 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD 63
Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASR 121
FS + +AG AVS + K A GC VID S A + P +VPEVN + ++ +
Sbjct: 64 FSQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALP-SAQAPNVVPEVNAERLASLAA 122
Query: 122 KNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKK 181
++++P+ S + L VAL PL L I+RV VT +VS G++G+ EL QT L +
Sbjct: 123 PFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNAR 182
Query: 182 TIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTAARVPVFI 240
+E R F + +AFN++ + G T E +++ E +++L P +K+S T +VPVF
Sbjct: 183 PLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFF 242
Query: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVE-SIRRDLVFVSRIRK 299
G + SV ++ + + AA+ + G +V+ D Y TPV ++ +D+V+V R+R
Sbjct: 243 GDSLSVALQSAAPVDLAAVNAALEAAPGIELVEAGD---YPTPVGDAVGQDVVYVGRVRA 299
Query: 300 DPTLKSGLNLWIVANNLRKGAALNAVQIAEL 330
LNLW+ ++N+RKGAALNAVQ+AEL
Sbjct: 300 GVDDPCQLNLWLTSDNVRKGAALNAVQVAEL 330
>gnl|CDD|181530 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 349
Score = 209 bits (535), Expect = 8e-55
Identities = 127/384 (33%), Positives = 180/384 (46%), Gaps = 97/384 (25%)
Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTK----------VPFGK 49
M KV ++GATG VG+ + ++ P EV AL ASERSAG P +
Sbjct: 2 MKLKVGILGATGMVGQRFVQLL--ANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPE 59
Query: 50 ETIDVQDVKSYD---FSDTDI--CLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDV 104
E D++ V S D D DI + + V+ ++ + A G V N+SA R D DV
Sbjct: 60 EVADME-VVSTDPEAVDDVDIVFSALPSD--VAGEVEEEFAKAGKPVFSNASAHRMDPDV 116
Query: 105 PLIVPEVNPQTISL--ASRKN------IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTY 156
PL++PEVNP+ + L RK I+ NPNCSTI LV+ALKPL D I+RV VTT
Sbjct: 117 PLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMDFG-IERVHVTTM 175
Query: 157 QSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVL 216
Q++SGAG G+ + +I NVIP+I EE K+
Sbjct: 176 QAISGAGYPGVPSM--------------------DIVDNVIPYIG--------GEEEKIE 207
Query: 217 VETQKIL---------DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK 267
ET KIL + +S T RVPV GH E+V ++F++D+ ++ A+ K
Sbjct: 208 KETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFK 267
Query: 268 GC--------------IVVDKPDKNEYITPVESIRRDL-------VFVSRIRKDPTLKSG 306
G I+ ++PD+ P R D V V R+R+D
Sbjct: 268 GLPQELGLPSAPKKPIILFEEPDR-----P--QPRLDRDAGDGMAVSVGRLREDGIFD-- 318
Query: 307 LNLWIVANNLRKGAALNAVQIAEL 330
+ ++ +N +GAA +V AEL
Sbjct: 319 IKFVVLGHNTVRGAAGASVLNAEL 342
>gnl|CDD|162144 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
(non-peptidoglycan organisms). Two closely related
families of aspartate-semialdehyde dehydrogenase are
found. They differ by a deep split in phylogenetic and
percent identity trees and in gap patterns. Separate
models are built for the two types in order to exclude
the USG-1 protein, found in several species, which is
specifically related to the Bacillus subtilis type of
aspartate-semialdehyde dehydrogenase. Members of this
type are found primarily in organisms that lack
peptidoglycan.
Length = 341
Score = 181 bits (461), Expect = 2e-46
Identities = 119/375 (31%), Positives = 172/375 (45%), Gaps = 86/375 (22%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTK------------VPFGKE 50
+VAV+GATG VG++ + ++ P E+ + AS RSAG + +P
Sbjct: 2 RVAVLGATGLVGQKFVKLL--AKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVR 59
Query: 51 TIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPE 110
+ + + + D DI + V+ ++ PK+A G V N+S R D DVPLI+PE
Sbjct: 60 DLPIVEPEPVASKDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPE 119
Query: 111 VNPQTISLASRKN-------IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAG 163
VN + L + I+ NPNC+T L +ALKPL D IK+V VTT Q+VSGAG
Sbjct: 120 VNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAG 179
Query: 164 KKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKIL 223
G+ + +I N+IPHI EE K+ ET+KIL
Sbjct: 180 YPGVPSM--------------------DILDNIIPHI--------GGEEEKIERETRKIL 211
Query: 224 ---------DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKG------ 268
VS T RVPV GH ESV++EF+K I++ A+ +G
Sbjct: 212 GKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLG 271
Query: 269 --------CIVVDKPDKNEYITPVESIRRDL-----VFVSRIRKDPTLKSGLNLWIVANN 315
IV D+ D+ P + RD V V R+R++ L ++ +N
Sbjct: 272 LPSAPEKPIIVRDEEDR-----PQPRLDRDAGGGMAVTVGRLREEG---GSLKYVVLGHN 323
Query: 316 LRKGAALNAVQIAEL 330
L +GAA + AEL
Sbjct: 324 LVRGAAGATLLNAEL 338
>gnl|CDD|129092 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. The semialdehyde dehydrogenase family is found
in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC),
which is involved in arginine biosynthesis, and
aspartate-semialdehyde dehydrogenase, an enzyme involved
in the biosynthesis of various amino acids from
aspartate. This family is also found in yeast and fungal
Arg5,6 protein, which is cleaved into the enzymes
N-acety-gamma-glutamyl-phosphate reductase and
acetylglutamate kinase. These are also involved in
arginine biosynthesis. All proteins in this entry
contain a NAD binding region of semialdehyde
dehydrogenase.
Length = 122
Score = 119 bits (300), Expect = 1e-27
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 11/122 (9%)
Query: 4 KVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPF-----GKETIDVQDV 57
KVA+VGATG VG+E+L ++ F + + A S RSAG +V E + +
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAA--SARSAGKRVSEAGPHLKGEVVLELEP 58
Query: 58 KSYDFSDTDICLMSAGHAVSSQMSP---KIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQ 114
+ ++ DI ++ H VS +++P K A G VID SSA+R D DVP +PEVNP+
Sbjct: 59 EDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPE 118
Query: 115 TI 116
I
Sbjct: 119 AI 120
>gnl|CDD|130806 TIGR01745, asd_gamma, aspartate-semialdehyde dehydrogenase,
gamma-proteobacterial.
Length = 366
Score = 95.4 bits (237), Expect = 2e-20
Identities = 93/354 (26%), Positives = 151/354 (42%), Gaps = 36/354 (10%)
Query: 4 KVAVVGATGNVGREMLN-IICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD- 61
V +VG G VG ++ + ER F V ++ + FG T +QD D
Sbjct: 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDA 61
Query: 62 FSDTDICLMSAGHAVSSQMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTISLA 119
DI + G ++++ PK+ +G ID +S+ R D +I+ VN I+
Sbjct: 62 LKALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG 121
Query: 120 SRKNI--IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAF 177
I NC+ ++++L L +++ V V TYQ+ SG G + + ELL Q
Sbjct: 122 LNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHL 181
Query: 178 -------LAKKT-----IENRV-------------FTKNIAFNVIPHIDVFMDGGSTKEE 212
LA + IE +V F +A ++IP ID +D G ++EE
Sbjct: 182 YGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREE 241
Query: 213 WKVLVETQKILDPN--IKVSCTAARVPVFIGHAESVNIEFEKDISIKDA---VAAINKSK 267
WK ET KIL + I V R+ H+++ I+ +KD+S++ + A N
Sbjct: 242 WKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNPWV 301
Query: 268 GCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAA 321
+ D+ +TP + V R+RK L+ + V + L GAA
Sbjct: 302 KVVPNDREITMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAA 355
>gnl|CDD|180636 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 369
Score = 94.9 bits (237), Expect = 2e-20
Identities = 94/336 (27%), Positives = 147/336 (43%), Gaps = 41/336 (12%)
Query: 3 FKVAVVGATGNVGREMLN-IICERGFPISEVVALASERSAGTKVP-FGKETIDVQDVKSY 60
KV VG G VG ++ ++ E F + E V S AG P FG + +QD
Sbjct: 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQAGGAAPSFGGKEGTLQDAFDI 60
Query: 61 D-FSDTDICLMSAGHAVSSQMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTI- 116
D DI + G ++++ PK+ A G ID +S R D +I+ VN I
Sbjct: 61 DALKKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVID 120
Query: 117 -SLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQT- 174
+LA+ NC+ +++AL L +++ V V TYQ+ SGAG + + ELL Q
Sbjct: 121 DALANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMG 180
Query: 175 ------KAFL-----AKKTIENRVF---------TKN----IAFNVIPHIDVFMDGGSTK 210
L A I+ +V T N +A ++IP ID + G ++
Sbjct: 181 ALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSR 240
Query: 211 EEWKVLVETQKIL---DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK 267
EEWK ET KIL I V RV H++++ I+ +KD+ + + +
Sbjct: 241 EEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILAAHN 300
Query: 268 GCIVV---DKPDKNEYITPVESIRRDL-VFVSRIRK 299
+ V D+ +TP ++ L + V R+RK
Sbjct: 301 PWVKVVPNDREATMRELTPA-AVTGTLTIPVGRLRK 335
>gnl|CDD|179024 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase;
Validated.
Length = 343
Score = 81.3 bits (202), Expect = 4e-16
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 36/194 (18%)
Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV----PF--GKETIDV 54
M KV +VGA+G G E+L ++ P E+VA+ S SAG + P G + +
Sbjct: 1 MMIKVGIVGASGYTGGELLRLLL--NHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVL 58
Query: 55 QDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS------------ 102
+ + + D+ ++ H VS ++P++ G VID S+ +R
Sbjct: 59 EPLDPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEH 118
Query: 103 -DVPLIV------PEVNPQTISLASRKNIIANPNC--STIQLVVALKPLHDLAMIK--RV 151
L+ PE+N + I A IANP C + L AL PL +I +
Sbjct: 119 AAPELLKEAVYGLPELNREEIKGARL---IANPGCYPTASLL--ALAPLLKAGLIDPDSI 173
Query: 152 VVTTYQSVSGAGKK 165
++ VSGAG+K
Sbjct: 174 IIDAKSGVSGAGRK 187
>gnl|CDD|180741 PRK06901, PRK06901, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 322
Score = 80.5 bits (199), Expect = 6e-16
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 51/343 (14%)
Query: 18 MLNIICERGFPISEVVALASERS--------AGTKVPFGKE-----------TIDVQDVK 58
LNI F +SE + A E+S PFG+E I ++V+
Sbjct: 3 TLNIAIAAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVE 62
Query: 59 SYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISL 118
DF+ + AG ++ + A GCIVID ++VP++VP VN + ++
Sbjct: 63 WADFNY----VFFAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAE 118
Query: 119 ASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFL 178
++NI++ P+ QL +AL P + ++ VT+ S + + +L QT L
Sbjct: 119 LRQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLL 178
Query: 179 AKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNI-KVSCTAARVP 237
++ + +AF+V P + ++ QKI P + V+ + +VP
Sbjct: 179 NGIPLDEE--EQRLAFDVFP-----------ANAQNLELQLQKIF-PQLENVTFHSIQVP 224
Query: 238 VFIGHAESVNI--EFEKDI-SIKDAVAAINKSKGCIVVDKPDKNEYITPV---ESIRRDL 291
VF G A+ V E+E DI S N ++ +K ITPV E+ +
Sbjct: 225 VFYGLAQMVTALSEYELDIESQLAEWQQNN-----LLRYHEEK--LITPVLNGENENGEE 277
Query: 292 VFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334
I + +++G+ W VA+ R A AV++ EL+ Q+
Sbjct: 278 SVKLHISQLSAVENGVQFWSVADEQRFNLAFLAVKLLELIYQQ 320
>gnl|CDD|162559 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase,
common form. This model represents the more common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and the gap architecture in a multiple
sequence alignment. Bacterial members of this family
tend to be found within Arg biosynthesis operons.
Length = 346
Score = 70.7 bits (174), Expect = 5e-13
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKV--------PFGKETIDV 54
KVA+VGA+G G E+L ++ P E+ L +S SAG V ++
Sbjct: 2 KVAIVGASGYTGGELLRLL--LNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEP 59
Query: 55 QDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS------------ 102
D + D D+ ++ H VS++++P++ A G VID S+ +R
Sbjct: 60 IDEEEIAE-DADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEH 118
Query: 103 -DVPLI------VPEVNPQTISLASRKNIIANPNC--STIQLVVALKPL--HDLAMIKRV 151
L+ +PE++ + I A +IANP C + L AL PL L +
Sbjct: 119 AGPELLQEAVYGLPELHREEIKGA---RLIANPGCYPTATLL--ALAPLLKEGLIDPTSI 173
Query: 152 VVTTYQSVSGAGKK 165
+V VSGAG+K
Sbjct: 174 IVDAKSGVSGAGRK 187
>gnl|CDD|162560 TIGR01851, argC_other, N-acetyl-gamma-glutamyl-phosphate reductase,
uncommon form. This model represents the less common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and gap architecture in a multiple sequence
alignment.
Length = 310
Score = 41.0 bits (96), Expect = 4e-04
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 67 ICL--MSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNI 124
+CL +A AVS +P N CI ID S+A+R D PE+ P
Sbjct: 55 LCLPDDAAREAVSLVDNP----NTCI-IDASTAYRTADDWAYGFPELAPGQREKIRNSKR 109
Query: 125 IANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVS---GAGKKGIDELLAQTKA 176
IANP C + ++PL + ++ T +VS G GK I + +
Sbjct: 110 IANPGCYPTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSAD 164
>gnl|CDD|178552 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 41.0 bits (96), Expect = 4e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 37/190 (19%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQD------V 57
++ V+GA+G G E+ ++ P E+ + ++R AG + QD V
Sbjct: 40 RIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAV 97
Query: 58 KSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLI---------- 107
K DFSD D H ++Q K ++D S+ +R
Sbjct: 98 KDADFSDVDAVFCCLPHG-TTQEIIKALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAP 156
Query: 108 ---------VPEVNPQTISLASRKNIIANPNC--STIQLVVALKPLHDLAMIKR--VVVT 154
+ E+ + I A +ANP C + IQL L PL +I+ +++
Sbjct: 157 ELQKEAVYGLTELQREEIKSARL---VANPGCYPTGIQLP--LVPLVKAGLIEPDNIIID 211
Query: 155 TYQSVSGAGK 164
VSGAG+
Sbjct: 212 AKSGVSGAGR 221
>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 341
Score = 35.2 bits (82), Expect = 0.026
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 225 PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPD 276
P++ ++ A +VP + H SVN+E +K ++ ++ + A+ + ++V D
Sbjct: 203 PDLDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASD 254
>gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.
Length = 257
Score = 34.0 bits (79), Expect = 0.061
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFS 63
KVAV GA+G +GRE++ + E+VA A +R V G + + D +
Sbjct: 3 KVAVAGASGRMGRELIEAVEA--AEDLELVA-AVDRPGSPLVGQGALGVAITDDLEAVLA 59
Query: 64 DTDI 67
D D+
Sbjct: 60 DADV 63
>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl
reductase.
Length = 390
Score = 32.8 bits (75), Expect = 0.11
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQ----DVKS 59
V VVGATG +G+ ++ + RG+ VVA+A E+S G + GKE + +V
Sbjct: 62 TVLVVGATGYIGKFVVRELVRRGYN---VVAVAREKS-GIRGKNGKEDTKKELPGAEVVF 117
Query: 60 YDFSDTD 66
D +D D
Sbjct: 118 GDVTDAD 124
>gnl|CDD|183344 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase;
Provisional.
Length = 313
Score = 32.8 bits (76), Expect = 0.12
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 84 IAANGCIVIDNSSAWRYDSDVPLIVPEVNP---QTISLASRKNIIANPNCSTIQLVVALK 140
I VID S+A R PE+ P + I+ A R +ANP C + L+
Sbjct: 70 IDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKR---VANPGCYPTGAIALLR 126
Query: 141 PLHDLAMIKRVVVTTYQSV---SGAGKKGIDE 169
PL D ++ + +V SG GK I
Sbjct: 127 PLVDAGLLPADYPVSINAVSGYSGGGKAMIAA 158
>gnl|CDD|130609 TIGR01546, GAPDH-II_archae, glyceraldehyde-3-phosphate
dehydrogenase, type II. All of the members of the seed
are characterized. See, for instance. This model is very
solid, there are no species falling between trusted and
noise at this time. The closest relatives scoring in the
noise are the class I GAPDH's.
Length = 333
Score = 31.0 bits (70), Expect = 0.44
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 225 PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPV 284
PN+ + A VP + H S+ +E +K ++ D + + + ++ +K E +
Sbjct: 200 PNLNIETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPRVLLFEKKKGFESTAEL 259
Query: 285 ESIRRDL 291
RDL
Sbjct: 260 IEFARDL 266
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. In the case of PUF60 (GP|6176532), in complex
with p54, and in the presence of U2AF, facilitates
association of U2 snRNP with pre-mRNA.
Length = 612
Score = 29.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 229 VSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAIN 264
V C AR P GH IE+ S +A+A++N
Sbjct: 232 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 267
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, D-erythrose-4-phosphate dehydrogenase.
Accordingly, this model is very close to the
corresponding models for GAPDH, and those sequences
which hit above trusted here invariably hit between
trusted and noise to the GAPDH model (TIGR01534).
Similarly, it may be found that there are species
outside of the gamma proteobacteria which synthesize
pyridoxine and have more than one aparrent GAPDH gene of
which one may have E4PD activity - this may necessitate
a readjustment of these models. Alternatively, some of
the GAPDH enzymes may prove to be bifunctional in
certain species.
Length = 325
Score = 29.5 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 107 IVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQS 158
IV VN Q L++ I++N +C+T +V +K L D I+ +TT S
Sbjct: 131 IVYGVNQQD--LSAEHTIVSNASCTTNCIVPLIKLLDDAIGIESGTITTIHS 180
>gnl|CDD|180973 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 28.9 bits (65), Expect = 1.8
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVK----- 58
VAV GA+G +G+ +L + ++G ++VVAL S S + E + V+ +
Sbjct: 180 TVAVTGASGTLGQALLKELHQQG---AKVVALTS-NSDKITLEINGEDLPVKTLHWQVGQ 235
Query: 59 ----SYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWR 99
+ DI +++ G V + +P+ A N ++ SAWR
Sbjct: 236 EAALAELLEKVDILIINHGINVHGERTPE-AINKSYEVNTFSAWR 279
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 4 KVAVVGATGNVGREMLNIICERG 26
K+ VV + GN+ +MLNII E+G
Sbjct: 297 KIGVVLSGGNIDVQMLNIIIEKG 319
>gnl|CDD|178299 PLN02696, PLN02696, 1-deoxy-D-xylulose-5-phosphate
reductoisomerase.
Length = 454
Score = 27.4 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 7/43 (16%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPIS-EVVALASERSAGTKV 45
++++G+TG++G + L+I+ E P +VVALA AG+ V
Sbjct: 59 PISLLGSTGSIGTQTLDIVAE--NPDKFKVVALA----AGSNV 95
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 27.4 bits (61), Expect = 5.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 179 AKK-TIENRVFTKNIAF-------NVIPHIDVFMDGGSTKEEWKVLVET 219
AK+ IE R F+K F V+P + DG S ++W+ T
Sbjct: 234 AKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCT 282
>gnl|CDD|163033 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP
family. This model represents a subfamily of pfam00107
as defined by Pfam, a superfamily in which some members
are zinc-binding medium-chain alcohol dehydrogenases
while others are quinone oxidoreductases with no bound
zinc. This subfamily includes proteins studied
crystallographically for insight into function: YhdH
from Escherichia coli and YhfP from Bacillus subtilis.
Members bind NADPH or NAD, but not zinc.
Length = 323
Score = 27.1 bits (61), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 4 KVAVVGATGNVGREMLNIICERGFPISEVVA 34
V V GATG VG + I+ + G+ EVVA
Sbjct: 148 PVLVTGATGGVGSLAVAILSKLGY---EVVA 175
>gnl|CDD|177881 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 27.2 bits (60), Expect = 6.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 102 SDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161
+D+P V VN NI++N +C+T L +K L + I + +TT S +G
Sbjct: 202 ADIPTYVVGVNEDDYD-HEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTG 260
>gnl|CDD|184944 PRK14982, PRK14982, acyl-ACP reductase; Provisional.
Length = 340
Score = 26.9 bits (60), Expect = 7.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 4 KVAVVGATGNVG 15
VAVVGATG++G
Sbjct: 157 TVAVVGATGDIG 168
>gnl|CDD|173524 PTZ00325, PTZ00325, malate dehydrogenase; Provisional.
Length = 321
Score = 26.9 bits (60), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 2 TFKVAVVGATGNVG 15
FKVAV+GA G +G
Sbjct: 8 MFKVAVLGAAGGIG 21
>gnl|CDD|179550 PRK03187, tgl, transglutaminase; Provisional.
Length = 272
Score = 26.9 bits (60), Expect = 8.7
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 16/35 (45%)
Query: 98 WRYDSDVPLIV----------------PEVNPQTI 116
W YD D+ LI P+ NP T
Sbjct: 150 WHYDRDLKLITKTGGDFLPGDCVYFKNPDFNPATP 184
>gnl|CDD|162405 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. The noise level is set relative not to E4PD, but the
next closest outliers, the class II GAPDH's (found in
archaea, TIGR01546) and aspartate semialdehyde
dehydrogenase (ASADH, TIGR01296) both of which have
highest-scoring hits around -225 to the prior model.
Length = 327
Score = 26.9 bits (60), Expect = 8.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 103 DVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161
D P IV VN R II+N +C+T L K L + I ++TT S +
Sbjct: 127 DAPTIVYGVNHDEYDPEER--IISNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTN 183
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 26.7 bits (59), Expect = 9.4
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 90 IVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIK 149
+VI SA D P+ V VN +T NI++N +C+T L K +H+ I
Sbjct: 202 VVISAPSA-----DAPMFVVGVNEKTYK--PNMNIVSNASCTTNCLAPLAKVVHEEFGIL 254
Query: 150 RVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGST 209
++TT + + A +K +D ++++ + + N+IP G+
Sbjct: 255 EGLMTTVHATT-ATQKTVD-----------GPSMKDWRGGRGASQNIIPS-----STGAA 297
Query: 210 KEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAI 263
K KVL E N K++ A RVP + EK S +D AAI
Sbjct: 298 KAVGKVLPEL------NGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAI 345
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,305,668
Number of extensions: 336421
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 48
Length of query: 335
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 241
Effective length of database: 3,963,321
Effective search space: 955160361
Effective search space used: 955160361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)