BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (335 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 335 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/335 (100%), Positives = 335/335 (100%) Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY Sbjct: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60 Query: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS 120 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS Sbjct: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS 120 Query: 121 RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK 180 RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK Sbjct: 121 RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK 180 Query: 181 KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI 240 KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI Sbjct: 181 KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI 240 Query: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD 300 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD Sbjct: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD 300 Query: 301 PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335 PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA Sbjct: 301 PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335 >gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 28.9 bits (63), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 91 VIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKR 150 +ID S+A R PE++ I NP C + L+PL ++ Sbjct: 78 IIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPD 137 Query: 151 VVVTTYQSVS---GAGKKGIDEL 170 T +VS G GKK I + Sbjct: 138 RYPITINAVSGYTGGGKKLISRM 160 >gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 26.9 bits (58), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 50 ETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVP 109 + ++D + + D D+ + G V+ + + +NG + S+ + IV Sbjct: 75 QVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVY 132 Query: 110 EVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161 VN Q SL +++N +C+T LV + L + I++ +TT S +G Sbjct: 133 GVNHQ--SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182 >gi|254780156|ref|YP_003064569.1| putative inositol-1-monophosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 256 Score = 26.6 bits (57), Expect = 0.66, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 290 DLVFVSRIRKDPTLKSGLNLWIVANNL 316 DL +++ R D L GL++W VA L Sbjct: 188 DLAYIAAGRFDGFLGKGLSIWCVAAGL 214 >gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 5 VAVVGATGNVGREMLNIICERGF 27 V VVG G +G ++ ERGF Sbjct: 6 VLVVGGAGYIGAHTCRVLYERGF 28 >gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 269 CIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANN 315 C VVD K TP ++R L F ++ P + + +++A N Sbjct: 113 CDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKN 159 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 23.1 bits (48), Expect = 7.8, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 264 NKSKGCIVVDKPDKNEYITPVESIRRDL 291 +K K + + D NEY+ VE ++ D+ Sbjct: 343 HKQKHLLTIALNDNNEYVLGVEPVKMDI 370 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.133 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,255 Number of Sequences: 1233 Number of extensions: 7821 Number of successful extensions: 17 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 8 length of query: 335 length of database: 328,796 effective HSP length: 74 effective length of query: 261 effective length of database: 237,554 effective search space: 62001594 effective search space used: 62001594 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)