BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(335 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 335
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60
MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY
Sbjct: 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY 60
Query: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS 120
DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS
Sbjct: 61 DFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS 120
Query: 121 RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK 180
RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK
Sbjct: 121 RKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAK 180
Query: 181 KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI 240
KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI
Sbjct: 181 KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFI 240
Query: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD 300
GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD
Sbjct: 241 GHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD 300
Query: 301 PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335
PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA
Sbjct: 301 PTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA 335
>gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 311
Score = 28.9 bits (63), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 91 VIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKR 150
+ID S+A R PE++ I NP C + L+PL ++
Sbjct: 78 IIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPD 137
Query: 151 VVVTTYQSVS---GAGKKGIDEL 170
T +VS G GKK I +
Sbjct: 138 RYPITINAVSGYTGGGKKLISRM 160
>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 333
Score = 26.9 bits (58), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 50 ETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVP 109
+ ++D + + D D+ + G V+ + + +NG + S+ + IV
Sbjct: 75 QVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVY 132
Query: 110 EVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161
VN Q SL +++N +C+T LV + L + I++ +TT S +G
Sbjct: 133 GVNHQ--SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182
>gi|254780156|ref|YP_003064569.1| putative inositol-1-monophosphatase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 256
Score = 26.6 bits (57), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 290 DLVFVSRIRKDPTLKSGLNLWIVANNL 316
DL +++ R D L GL++W VA L
Sbjct: 188 DLAYIAAGRFDGFLGKGLSIWCVAAGL 214
>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 333
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 5 VAVVGATGNVGREMLNIICERGF 27
V VVG G +G ++ ERGF
Sbjct: 6 VLVVGGAGYIGAHTCRVLYERGF 28
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 269 CIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANN 315
C VVD K TP ++R L F ++ P + + +++A N
Sbjct: 113 CDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKN 159
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 23.1 bits (48), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 264 NKSKGCIVVDKPDKNEYITPVESIRRDL 291
+K K + + D NEY+ VE ++ D+
Sbjct: 343 HKQKHLLTIALNDNNEYVLGVEPVKMDI 370
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,255
Number of Sequences: 1233
Number of extensions: 7821
Number of successful extensions: 17
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 335
length of database: 328,796
effective HSP length: 74
effective length of query: 261
effective length of database: 237,554
effective search space: 62001594
effective search space used: 62001594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)