HHsearch alignment for GI: 254780308 and conserved domain: COG1705
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=91.30 E-value=1.3 Score=24.41 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998532346999999983899889445231002210102564189999875327531566547899999986438777
Q gi|254780308|r 106 QGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVIS 185 (288)
Q Consensus 106 ~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~ 185 (288)
T Consensus 42 ~~~~Fi~~i~~~A~~~~~~~gi~~Si~iAQAiLESgwGks~--------l~~-----------------------~~~NL 90 (201)
T COG1705 42 SQQAFIDKIAPAAQPLAQEYGILPSITIAQAILESGWGKSE--------LAS-----------------------KGNNL 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH--------HCC-----------------------CCCCE
T ss_conf 29999999989999999984988799999999973776002--------215-----------------------88875
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 000367523578666552244421536789998788789888999999999972
Q gi|254780308|r 186 SHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKL 239 (288)
Q Consensus 186 ~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~ 239 (288)
T Consensus 91 FGIK~s~~G~---sv~~~T~E~~~G~~~~i~a~FR~Y~S~~eS~~Dya~ll~~~ 141 (201)
T COG1705 91 FGIKGSYNGP---SVTLKTQEYENGVAVKIKAKFRVYPSYAESLSDYARLLRNG 141 (201)
T ss_pred EEEEECCCCC---CEEEECEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 5456136788---56750446358988897226232699899999999998749