HHsearch alignment for GI: 254780308 and conserved domain: COG1705

>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=91.30  E-value=1.3  Score=24.41  Aligned_cols=100  Identities=22%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99998532346999999983899889445231002210102564189999875327531566547899999986438777
Q gi|254780308|r  106 QGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVIS  185 (288)
Q Consensus       106 ~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~  185 (288)
T Consensus        42 ~~~~Fi~~i~~~A~~~~~~~gi~~Si~iAQAiLESgwGks~--------l~~-----------------------~~~NL   90 (201)
T COG1705          42 SQQAFIDKIAPAAQPLAQEYGILPSITIAQAILESGWGKSE--------LAS-----------------------KGNNL   90 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH--------HCC-----------------------CCCCE
T ss_conf             29999999989999999984988799999999973776002--------215-----------------------88875


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             000367523578666552244421536789998788789888999999999972
Q gi|254780308|r  186 SHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKL  239 (288)
Q Consensus       186 ~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~  239 (288)
T Consensus        91 FGIK~s~~G~---sv~~~T~E~~~G~~~~i~a~FR~Y~S~~eS~~Dya~ll~~~  141 (201)
T COG1705          91 FGIKGSYNGP---SVTLKTQEYENGVAVKIKAKFRVYPSYAESLSDYARLLRNG  141 (201)
T ss_pred             EEEEECCCCC---CEEEECEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf             5456136788---56750446358988897226232699899999999998749