HHsearch alignment for GI: 254780308 and conserved domain: pfam01464
>pfam01464 SLT Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
Probab=98.89 E-value=3.8e-09 Score=75.91 Aligned_cols=99 Identities=26% Similarity=0.421 Sum_probs=75.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC
Q ss_conf 99999998389988944523100221010256418999987532753156654789999998643877700036752357
Q gi|254780308|r 117 LLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEI 196 (288)
Q Consensus 117 ~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~ 196 (288)
T Consensus 2 ~i~~~a~~~~v~p~ll~ai~~~ES~f~p~------------------------------------------av-S~~gA~ 38 (117)
T pfam01464 2 LIIKAAEKYGIDPSLLAAIAQQESGFNPN------------------------------------------AI-SGSGAL 38 (117)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCC------------------------------------------CC-CCCCCC
T ss_conf 89999989198999999999987599998------------------------------------------98-798871
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHH
Q ss_conf 8666552244421536789998788789888999999999972988858976453458999985262899
Q gi|254780308|r 197 GQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNY 266 (288)
Q Consensus 197 G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s~~y 266 (288)
T Consensus 39 GlmQi~p~t~~~~~~~~-~~~~~~l~-dp~~ni~~g~~yL~~l~~~~~~~------~~~alaaYNaG~g~ 100 (117)
T pfam01464 39 GLMQIMPSTAKALGLKG-SPGEDDLF-DPCDNISAGAKYLKHLYKRFGGN------LWLALAAYNAGPGR 100 (117)
T ss_pred CHHHCCHHHHHHHHHHC-CCCHHHCC-CHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHCCCHHH
T ss_conf 31632788999998702-89802004-99999999999999999983998------99999999158889