Query gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 149 out of 1157
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 11:57:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780308.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1qus_A Lytic murein transglyc 99.9 3.6E-24 1.1E-28 166.3 15.8 144 43-243 19-164 (164)
2 >1qus_A Lytic murein transglyc 99.9 2.8E-22 8.3E-27 154.8 5.3 71 81-152 1-71 (86)
3 >3bkh_A Phikz144, lytic transg 99.1 2.6E-10 7.7E-15 82.5 6.6 116 111-269 8-130 (181)
4 >3gxr_A Goose-type lysozyme 1; 99.0 2.7E-09 8.1E-14 76.4 7.8 136 99-277 31-182 (187)
5 >1gbs_A Australian black SWAN 98.9 1E-08 3E-13 73.0 8.0 137 95-278 29-181 (185)
6 >1qsa_A Protein (soluble lytic 98.6 7.7E-08 2.3E-12 67.6 5.8 95 109-247 2-99 (172)
7 >3b72_A Lysozyme C; hen egg-wh 97.2 3.3E-05 9.8E-10 51.7 -1.0 102 115-263 29-132 (147)
8 >2vb1_A Lysozyme C; antimicrob 96.5 0.00097 2.9E-08 42.9 1.7 83 117-238 13-96 (129)
9 >2fbd_A Lysozyme 1; digestive 96.4 0.0078 2.3E-07 37.4 5.8 94 116-248 6-109 (122)
10 >2zyc_A Peptidoglycan hydrolas 96.1 0.0055 1.6E-07 38.3 3.6 44 107-150 2-45 (118)
11 >3fi7_A LMO1076 protein; liste 96.0 0.0066 2E-07 37.8 3.7 40 107-146 5-44 (92)
12 >3eo5_A Resuscitation-promotin 86.4 1.4 4.1E-05 23.8 4.8 66 174-243 9-74 (85)
13 >1qus_A Lytic murein transglyc 68.3 1.8 5.2E-05 23.2 0.8 12 250-261 61-72 (72)
14 >2auw_A Hypothetical protein N 68.2 9.1 0.00027 18.9 5.1 42 39-80 3-48 (81)
15 >1jug_A Lysozyme; calcium-bind 64.5 1.1 3.4E-05 24.3 -0.8 86 119-243 15-107 (125)
16 >1iiz_A Lysozyme; hydrolase; 2 64.1 4.1 0.00012 21.0 2.0 94 116-248 6-107 (120)
17 >2cob_A LCOR protein; MLR2, KI 57.2 9.8 0.00029 18.7 3.0 34 100-133 15-48 (70)
18 >1wdc_C Scallop myosin; calciu 47.4 9.8 0.00029 18.7 1.7 52 170-221 9-65 (79)
19 >1xks_A Nuclear pore complex p 41.6 8.2 0.00024 19.2 0.6 23 129-151 4-26 (132)
20 >1fpw_A Yeast frequenin, calci 41.6 9.5 0.00028 18.8 0.9 53 169-221 3-61 (74)
21 >2zuy_A YESX protein; beta-pro 37.1 7 0.00021 19.6 -0.4 13 210-222 85-97 (158)
22 >3fhg_A Mjogg, N-glycosylase/D 37.0 30 0.00089 15.7 3.5 32 110-141 29-61 (65)
23 >2ksc_A Cyanoglobin; hemeprote 36.8 30 0.0009 15.7 3.1 35 37-71 21-55 (66)
24 >2jen_A Xyloglucanase, endo-be 34.1 12 0.00035 18.2 0.4 38 1-38 1-38 (261)
25 >1bg6_A N-(1-D-carboxylethyl)- 33.9 15 0.00044 17.6 0.9 55 95-149 38-92 (164)
26 >2vx5_A Cellvibrio japonicus m 33.6 33 0.00098 15.5 2.6 24 1-24 1-24 (396)
27 >3fs7_A Parvalbumin, thymic; c 32.4 36 0.0011 15.3 3.6 52 170-221 5-63 (72)
28 >1twf_A B220, DNA-directed RNA 31.9 19 0.00057 16.9 1.2 23 199-222 62-84 (101)
29 >1hqm_D DNA-directed RNA polym 30.5 21 0.00062 16.7 1.2 23 199-222 123-145 (170)
30 >2opo_A Polcalcin CHE A 3; cal 30.1 14 0.0004 17.8 0.2 12 210-221 13-24 (45)
31 >3fhf_A Mjogg, N-glycosylase/D 30.0 39 0.0012 15.0 3.5 33 109-141 64-97 (101)
32 >2k7c_A CABP1, calbrain, calci 29.4 22 0.00065 16.6 1.2 52 170-221 7-63 (72)
33 >1rro_A RAT oncomodulin; calci 29.4 40 0.0012 15.0 2.5 53 169-221 4-63 (72)
34 >1jko_C HIN recombinase, DNA-i 29.2 36 0.0011 15.3 2.2 38 97-135 4-41 (52)
35 >3h0g_A DNA-directed RNA polym 29.0 23 0.00067 16.5 1.2 19 199-217 67-85 (106)
36 >2waq_A DNA-directed RNA polym 27.9 25 0.00073 16.3 1.2 23 199-222 81-103 (124)
37 >3iyd_D DNA-directed RNA polym 27.9 22 0.00064 16.6 0.9 22 199-221 117-138 (163)
38 >2a6h_D DNA-directed RNA polym 27.4 24 0.00072 16.3 1.1 54 167-221 63-128 (153)
39 >2pvb_A Protein (parvalbumin); 27.3 44 0.0013 14.7 2.6 52 170-221 5-63 (72)
40 >2zux_A YESW protein; beta-pro 27.2 17 0.00051 17.2 0.3 14 209-222 84-97 (158)
41 >1k9u_A Polcalcin PHL P 7; pol 26.9 14 0.00041 17.8 -0.3 12 210-221 11-22 (43)
42 >3d5l_A Regulatory protein REC 26.1 46 0.0014 14.6 3.0 22 47-68 23-44 (45)
43 >2vdr_A Integrin alpha-IIB; ce 25.4 19 0.00058 16.9 0.3 14 210-223 73-86 (124)
44 >3c1d_A Protein ORAA, regulato 25.3 46 0.0014 14.6 2.2 24 47-70 22-45 (47)
45 >1cb1_A Calbindin D9K; calcium 25.1 18 0.00052 17.1 0.0 52 170-221 7-66 (78)
46 >3e3v_A Regulatory protein REC 24.3 50 0.0015 14.4 2.7 22 47-68 23-44 (45)
47 >1nvm_A HOA, 4-hydroxy-2-oxova 23.9 51 0.0015 14.4 2.6 42 99-140 5-47 (72)
48 >2nl9_A Fusion protein consist 23.9 51 0.0015 14.4 2.5 97 96-196 36-146 (157)
49 >1yt3_A Ribonuclease D, RNAse 22.5 54 0.0016 14.2 3.1 56 108-177 11-78 (82)
50 >3iac_A Glucuronate isomerase; 22.4 55 0.0016 14.2 2.7 41 148-188 15-63 (85)
51 >1j5s_A Uronate isomerase; TM0 21.9 56 0.0016 14.1 2.4 31 162-192 73-104 (119)
52 >1am7_A Lysozyme; glycosidase, 21.6 32 0.00096 15.6 0.8 22 190-211 32-53 (58)
53 >1oyg_A Levansucrase; glycosid 21.5 25 0.00073 16.3 0.2 52 138-199 45-100 (122)
54 >3k6s_A Integrin alpha-X; hete 20.9 34 0.001 15.4 0.8 11 212-222 150-160 (235)
55 >2hnh_A DNA polymerase III alp 20.4 60 0.0018 13.9 2.6 78 63-145 6-83 (83)
56 >1twy_A ABC transporter, perip 20.4 37 0.0011 15.2 0.9 16 1-16 1-16 (290)
57 >2gkm_A TRHBN, hemoglobin-like 20.3 60 0.0018 13.9 3.7 42 35-76 68-109 (120)
58 >2h2k_A Protein S100-A13; calc 20.1 27 0.00079 16.0 0.1 52 170-221 22-81 (106)
59 >2qpt_A EH domain-containing p 20.1 37 0.0011 15.2 0.8 12 210-221 67-78 (118)
No 1
>>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:1-65,A:130-228)
Probab=99.92 E-value=3.6e-24 Score=166.25 Aligned_cols=144 Identities=26% Similarity=0.441 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999983999899999860877770233320256666777989998764001357999998532346999999
Q gi|254780308|r 43 GEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLK 122 (288)
Q Consensus 43 ~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie 122 (288)
.+--..+-+.+.++|+++..+..+|+++++...||++.-+|.|..
T Consensus 19 ~~~~~fi~~m~~~~~f~~~~l~~~~~~~~~~~~~~~l~~~~a~~~----------------------------------- 63 (164)
T 1qus_A 19 PNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT----------------------------------- 63 (164)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTTCCCCHHHHHHHHCC---------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCC-----------------------------------
T ss_conf 779999999999829899999999971957688999876256534-----------------------------------
Q ss_pred HHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCHHC-CCCCCCCCCCCC
Q ss_conf 983899889445231002210102564189999875327-531566547899999986438777000-367523578666
Q gi|254780308|r 123 KEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYD-CRRAKFFTEQFFYALDLVKKGVISSHA-LGATFGEIGQFQ 200 (288)
Q Consensus 123 ~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d-~RR~~ff~~el~a~l~~~~~g~~~~~~-~GS~aGa~G~~Q 200 (288)
+.+|++++++++++++|+ ++|.+++..+|+++|..+.++.-..+. .+|++||+|+||
T Consensus 64 ---------------------~~~g~~~~~~a~~~la~~~~~r~~~~~~~l~Aai~ai~~~ES~f~p~a~S~aGA~GLMQ 122 (164)
T 1qus_A 64 ---------------------SVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQ 122 (164)
T ss_dssp -----------------------CCCEEHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHTTCCGGGCEECTTCCBTTTT
T ss_pred ---------------------CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
T ss_conf ---------------------46588638999999996456288899999999999987259985778754445557875
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 5522444215367899987887898889999999999729888
Q gi|254780308|r 201 FLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTK 243 (288)
Q Consensus 201 FmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~ 243 (288)
|||+|+..|++|+|+||+.|+|+ +.|+|.+.++||+.+||++
T Consensus 123 imP~T~~~~g~d~~~~g~~dl~d-P~dnI~aga~YL~~LgWqr 164 (164)
T 1qus_A 123 FMPSSYKQYAVDFSGDGHINLWD-PVDAIGSVANYFKAHGWVK 164 (164)
T ss_dssp BCHHHHHHHCCCCSSSSCCCTTS-HHHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCC
T ss_conf 03146874153779998666568-1336999999999828999
No 2
>>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:66-129,A:301-322)
Probab=99.86 E-value=2.8e-22 Score=154.81 Aligned_cols=71 Identities=20% Similarity=0.392 Sum_probs=66.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHH
Q ss_conf 256666777989998764001357999998532346999999983899889445231002210102564189
Q gi|254780308|r 81 RKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLL 152 (288)
Q Consensus 81 r~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl 152 (288)
|+|| ||+.+|++|++++|++.||+.|++++++|+++|++||++|||||+||+|||||||+||++...+-.+
T Consensus 1 R~Qp-Ef~~~~~~Y~~~~v~~~ri~~Gr~~~~~~~~~L~~ie~~YGVp~~iIvAIwGiET~yG~~~~~~~~~ 71 (86)
T 1qus_A 1 KPPS-GPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVHSTHYAM 71 (86)
T ss_dssp -----CCSCHHHHHHTTTCSHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCSCHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCHHHHH
T ss_conf 8861-2367799999985899999999999999999999999997929888756203553012248598999
No 3
>>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A* (A:88-268)
Probab=99.08 E-value=2.6e-10 Score=82.55 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf 53234699999998389988944523100221010256418999987532753156654789999998643877700036
Q gi|254780308|r 111 KKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALG 190 (288)
Q Consensus 111 ~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~G 190 (288)
-.++...+++++++|||||++|.||.-+||.|... ..+
T Consensus 8 ~~~~~~~i~~aa~~~gv~p~ll~Ai~~~ES~f~~~------------------------------------------a~s 45 (181)
T 3bkh_A 8 RAAATPVXNAVENATGVRSQLLLTFASIESAFDYE------------------------------------------IKA 45 (181)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCSS------------------------------------------CBC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC------------------------------------------CCC
T ss_conf 55777520001101012433213320112346776------------------------------------------687
Q ss_pred CCCCCCCCCCCCHHHHHHCC----CCC---CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCH
Q ss_conf 75235786665522444215----367---89998788789888999999999972988858976453458999985262
Q gi|254780308|r 191 ATFGEIGQFQFLPVNVVKYA----IDA---DEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNAS 263 (288)
Q Consensus 191 S~aGa~G~~QFmPs~~~~ya----vD~---dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s 263 (288)
+..||.|.|||||+++..++ .++ ++.+..|++ ++.+.+.-.|.||+..-=+-+..+........++..||.-
T Consensus 46 ~~sga~GlmQ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-dp~~ni~~ga~~l~~~~~~~~~~~~~~~~~~~a~aaYn~G 124 (181)
T 3bkh_A 46 KTSSATGWFQFLTGTWKTXIENYGXKYGVLTDPTGALRK-DPRISALXGAELIKENXNILRPVLKREPTDTDLYLAHFFG 124 (181)
T ss_dssp TTSSCBTTTTBCHHHHHHHHHHHGGGGTCCCCTTCGGGG-CHHHHHHHHHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHC
T ss_pred CCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 543331201341305666655306741133431266542-1567888888865434555431048999836677887438
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780308|r 264 LNYNKT 269 (288)
Q Consensus 264 ~~y~~~ 269 (288)
..++..
T Consensus 125 ~~~~~~ 130 (181)
T 3bkh_A 125 PGAARR 130 (181)
T ss_dssp HHHHHH
T ss_pred CCHHHH
T ss_conf 521889
No 4
>>3gxr_A Goose-type lysozyme 1; atlantic COD, FISH lysozyme, active site residues, substrate binding sites, surface potential, muramidase activity; HET: NAG; 1.70A {Gadus morhua} PDB: 3gxk_A* (A:)
Probab=98.96 E-value=2.7e-09 Score=76.39 Aligned_cols=136 Identities=12% Similarity=0.128 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 00135799999853234699999998389988944523100221010256418999987532753156654789999998
Q gi|254780308|r 99 SSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDL 178 (288)
Q Consensus 99 vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~ 178 (288)
+.............++...+.++.++|||||.+|.||.-+||+|...--+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~a~~~gip~~li~Ai~~~ES~~~p~a~s------------------------------ 80 (187)
T 3gxr_A 31 ASHTMAQTDAGRMEKYKSFINNVAKKHVVDPAVIAAIISRESRAGNVIFN------------------------------ 80 (187)
T ss_dssp HHHHHHHHTHHHHHTTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTTTTT------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC------------------------------
T ss_conf 61788876576689999999999999599999999998972477600004------------------------------
Q ss_pred HHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 64387770003675235786665522444215367899987887898889999999999729888589764534589999
Q gi|254780308|r 179 VKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILK 258 (288)
Q Consensus 179 ~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~ 258 (288)
...+..++.+||+|++||||+++..+++ .|..+++.+++.-.+.|++..+.+.+ .|.....-..++.
T Consensus 81 -----~~~~~~~~~~ga~GlmQ~~p~t~~~~~~-------~dp~~ni~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ala 147 (187)
T 3gxr_A 81 -----TTPPGWGDNYNGFGLMQVDKRYHEPRGA-------WNSEEHIDQATGILVNFIQLIQKKFP-SWSTEQQLKGAIA 147 (187)
T ss_dssp -----SSSTTEETTTTEETTTTEETTTSCCCSC-------TTSHHHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHH
T ss_conf -----5788775876671125257410123478-------89899999999999999999997567-7787878788887
Q ss_pred HHH----------------CHHHHHHHHHHHHHHH
Q ss_conf 852----------------6289999999999996
Q gi|254780308|r 259 HWN----------------ASLNYNKTIAYIAAHI 277 (288)
Q Consensus 259 ~~n----------------~s~~y~~~v~~~a~~~ 277 (288)
.|| .+..|+..|...+..+
T Consensus 148 aYn~G~g~v~~~~~~~~~~~t~~Y~~~V~~~~~~y 182 (187)
T 3gxr_A 148 AYNTGDGRVESYESVDSRTTGKDYSNDVVARAQWY 182 (187)
T ss_dssp HHHHCGGGCCCSTTTTTTSGGGCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 64647013422047999842478999999999999
No 5
>>1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl); 1.50A {Cygnus atratus} (A:)
Probab=98.86 E-value=1e-08 Score=72.98 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 87640013579999985323469999999838998894452310022101025641899998753275315665478999
Q gi|254780308|r 95 LDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFY 174 (288)
Q Consensus 95 ~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a 174 (288)
....+.+...........++...+.++.++|||||.+|.||.-.||+|...-
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~i~~aa~~~gv~~~ll~Ai~~~ES~f~p~a---------------------------- 80 (185)
T 1gbs_A 29 CGVPASKTIAERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL---------------------------- 80 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCHHHHHHHHHHHHGGGTTC----------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH----------------------------
T ss_conf 2786500377877888898999999860564135567532100213231254----------------------------
Q ss_pred HHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 99986438777000367523578666552244421536789998788789888999999999972988858976453458
Q gi|254780308|r 175 ALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNF 254 (288)
Q Consensus 175 ~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~ 254 (288)
....+|.+||+|.|||||+++..+++. |...++.+...-.+.+++..+-..+. +.....-.
T Consensus 81 -----------~s~~~~~~gA~GlmQi~p~t~~~~~~~-------d~~~ni~~~~~~l~~~~~~~~~~~~~-~~~~g~~~ 141 (185)
T 1gbs_A 81 -----------KNGWGDRGNGFGLMQVDKRSHKPQGTW-------NGEVHITQGTTILTDFIKRIQKKFPS-WTKDQQLK 141 (185)
T ss_dssp -----------BTTBCTTSCEETTTTEETTTSCCCSCT-------TSHHHHHHHHHHHHHHHHHHHHHCTT-SCHHHHHH
T ss_pred -----------HCCCCCCCCCCEEEEECCCCCCCCCCC-------CCEEEEECCCCHHHHHHHHHHHHCCC-CCHHHHHC
T ss_conf -----------436665678500256314456888751-------66278832725299999999976888-42544514
Q ss_pred HHHHHHHC----------------HHHHHHHHHHHHHHHC
Q ss_conf 99998526----------------2899999999999968
Q gi|254780308|r 255 AILKHWNA----------------SLNYNKTIAYIAAHID 278 (288)
Q Consensus 255 ~~~~~~n~----------------s~~y~~~v~~~a~~~~ 278 (288)
.+|..||. ...|+..|......+.
T Consensus 142 ~alaaYN~G~g~v~~~~~~~~~~~~~~Y~~~V~~~~~~y~ 181 (185)
T 1gbs_A 142 GGISAYNAGAGNVRSYARMDIGTTHDDYANDVVARAQYYK 181 (185)
T ss_dssp HHHHHHHHCGGGCCCSTTTTTTSGGGCHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5500022687323442010457663024678999999998
No 6
>>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} (A:447-618)
Probab=98.60 E-value=7.7e-08 Score=67.64 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 98532346999999983899889445231002210102564189999875327531566547899999986438777000
Q gi|254780308|r 109 ALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHA 188 (288)
Q Consensus 109 ~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~ 188 (288)
.+-.++...++++.++|||||.+|.||.-+||.|... .
T Consensus 2 ~~p~~~~~~i~~aA~~~gi~~~ll~Ai~~~ES~~~p~------------------------------------------a 39 (172)
T 1qsa_A 2 RFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK------------------------------------------V 39 (172)
T ss_dssp HSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT------------------------------------------C
T ss_pred HCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCC------------------------------------------C
T ss_conf 1035665358888766399989999999971589998------------------------------------------8
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 367523578666552244421536789998---78878988899999999997298885897
Q gi|254780308|r 189 LGATFGEIGQFQFLPVNVVKYAIDADEDGK---IDLVKSNIDAIASAAKFLAKLGWTKCAGY 247 (288)
Q Consensus 189 ~GS~aGa~G~~QFmPs~~~~yavD~dgdG~---~dl~~~~~Da~aS~AnyL~~~GW~~g~~~ 247 (288)
-|..||.|.+||||+++..++.++...+- .|++ ++.+.+...+.||+..-=+-+.+|
T Consensus 40 -~s~~ga~GlmQ~~~~~~~~~~~~~~~~~~~~~~~l~-dp~~ni~~g~~~l~~~~~~~~~~~ 99 (172)
T 1qsa_A 40 -KSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLL-DPETNINIGTSYLQYVYQQFGNNR 99 (172)
T ss_dssp -BCTTCCBTTTTBCHHHHHHHHHHHTCCSCCCGGGGG-SHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred -CCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHC-CHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf -269998211034879999999984998888867736-999999999999999998829989
No 7
>>3b72_A Lysozyme C; hen egg-white lysozyme, protein-SDS complex, MPD, allergen, antimicrobial, bacteriolytic enzyme glycosidase, hydrolase; 1.50A {Gallus gallus} (A:)
Probab=97.24 E-value=3.3e-05 Score=51.72 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
Q ss_conf 46999999983899889445231002210102564189999875327531566547899999986438777000367523
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFG 194 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aG 194 (288)
...+..+.++|||||.+++||.-.||+|=-. -+ ...|.-.+
T Consensus 29 ~~~~~~~a~~~gi~~~~~~ai~~~ES~~np~-------------------------------------A~--s~~~~gs~ 69 (147)
T 3b72_A 29 AMKRHGLDNYRGYSLGNWVCAAKFESNFNTQ-------------------------------------AT--NRNTDGST 69 (147)
T ss_dssp HHHHTTCTTBTTBCHHHHHHHHHHHHTTBTT-------------------------------------CE--EECTTSCE
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------------------------------------CC--CCCCCCCC
T ss_conf 9998499844200288999999997069774-------------------------------------61--25899987
Q ss_pred CCCCCCCCHHHHHHCCCCC-CCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCH
Q ss_conf 5786665522444215367-8999-8788789888999999999972988858976453458999985262
Q gi|254780308|r 195 EIGQFQFLPVNVVKYAIDA-DEDG-KIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNAS 263 (288)
Q Consensus 195 a~G~~QFmPs~~~~yavD~-dgdG-~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s 263 (288)
++|.||+||.++-..+..+ ..+. ..+++ ++.+.+...+-||+..==+.|.. +.++..||.-
T Consensus 70 d~GlmQI~~~t~~~~~~~~~~~~~~~~~~~-dp~~ni~~ga~~l~~~~~~~g~~-------~~a~~aYn~g 132 (147)
T 3b72_A 70 DYGILQINSRWWCNDGRTPGSRNLCNIPCS-ALLSSDITASVNCAKKIVSDGNG-------MNAWVAWRNR 132 (147)
T ss_dssp EETTTTEETTTTCBCSCCTTCCCTTCSBGG-GGGSSSCHHHHHHHHHHHTSSSG-------GGGSHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHCCCC-------CCHHHHHHHH
T ss_conf 667267547102569999987785789789-98589828999999999825567-------5142888987
No 8
>>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution, allergen, hydrolase, glycosidase, bacteriolytic enzyme; HET: EDO; 0.65A {Gallus gallus} (A:)
Probab=96.53 E-value=0.00097 Score=42.87 Aligned_cols=83 Identities=12% Similarity=-0.034 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC
Q ss_conf 99999998389988944523100221010256418999987532753156654789999998643877700036752357
Q gi|254780308|r 117 LLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEI 196 (288)
Q Consensus 117 ~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~ 196 (288)
.+..+.++|||||.+|+||.-+||+|=-. .+.+ .+--.+++
T Consensus 13 ~~~~~a~~~~v~~~ll~ai~~~ES~~np~-------------------------------------a~s~--~~~gs~~~ 53 (129)
T 2vb1_A 13 KRHGLDNYRGYSLGNWVCAAKFESNFNTQ-------------------------------------ATNR--NTDGSTDY 53 (129)
T ss_dssp HHTTCTTBTTBCHHHHHHHHHHHHTTBTT-------------------------------------CEEE--CTTSCEEE
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCCC-------------------------------------CCCC--CCCCCCCC
T ss_conf 98599855545488889998875268674-------------------------------------6235--89998766
Q ss_pred CCCCCCHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 866655224442153678-999878878988899999999997
Q gi|254780308|r 197 GQFQFLPVNVVKYAIDAD-EDGKIDLVKSNIDAIASAAKFLAK 238 (288)
Q Consensus 197 G~~QFmPs~~~~yavD~d-gdG~~dl~~~~~Da~aS~AnyL~~ 238 (288)
|+||+||.++-..+..+- .+.-.|.-.++.+.+...+-||..
T Consensus 54 GlmQi~~~~~~~~~~~~g~~~~~~~~~~n~~~ni~~ga~~l~~ 96 (129)
T 2vb1_A 54 GILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK 96 (129)
T ss_dssp TTTTEETTTTCBCSSCTTCCCTTCSBGGGGGCSSCHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 6166435102559999998786789889984887089999999
No 9
>>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A (A:)
Probab=96.42 E-value=0.0078 Score=37.39 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=67.8
Q ss_pred HHHHHHHHHHCCCHHHH---HHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH-HCCCC
Q ss_conf 69999999838998894---452310022101025641899998753275315665478999999864387770-00367
Q gi|254780308|r 116 RLLINLKKEYGVPPGIL---MALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISS-HALGA 191 (288)
Q Consensus 116 ~~L~~ie~~yGV~~~ii---~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~-~~~GS 191 (288)
=.|.++-++||||+..| |||.-.||+|=.. -+.+ +.-||
T Consensus 6 Cela~~~~~~gi~~~~L~~wvaIa~~ES~~~~~-------------------------------------Av~~~n~ngs 48 (122)
T 2fbd_A 6 CSLAREMYALGVPKSELPQWTCIAEHESSYRTN-------------------------------------VVGPTNSNGS 48 (122)
T ss_dssp HHHHHHHHHTTCCGGGHHHHHHHHHHHHTTBSS-------------------------------------CBCCCCTTSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-------------------------------------CEECCCCCCC
T ss_conf 899999999599887999999999998289704-------------------------------------1317778998
Q ss_pred CCCCCCCCCCCHHHHHHC---CCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 523578666552244421---5367899987---88789888999999999972988858976
Q gi|254780308|r 192 TFGEIGQFQFLPVNVVKY---AIDADEDGKI---DLVKSNIDAIASAAKFLAKLGWTKCAGYQ 248 (288)
Q Consensus 192 ~aGa~G~~QFmPs~~~~y---avD~dgdG~~---dl~~~~~Da~aS~AnyL~~~GW~~g~~~~ 248 (288)
...|.+|..+..+-.. ++..++.+.. .|-.++.|.+.-++-+|+.+|++.+..|.
T Consensus 49 --~d~GlmQIn~~~~~~~~~~~~~~~~c~~~c~~ll~~D~~~ni~ca~~il~~~g~~~w~~W~ 109 (122)
T 2fbd_A 49 --NDYGIFQINNYYWCQPSNGRFSYNECHLSCDALLTDNISNSVTCARKIKSQQGWTAWSTWK 109 (122)
T ss_dssp --CEETTTTEETTTTSBCTTCCCCCCTTCSBGGGGGSSSCHHHHHHHHHHHHHHCGGGSTTHH
T ss_pred --CCCCEEEECHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf --6655056322766503568888664558599981687799999999999974877682540
No 10
>>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} (A:1-38,A:91-170)
Probab=96.09 E-value=0.0055 Score=38.32 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCC
Q ss_conf 99985323469999999838998894452310022101025641
Q gi|254780308|r 107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTP 150 (288)
Q Consensus 107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~ 150 (288)
.+.|+.+....-+++++.|||+++|++|=+.+||++|.+.-.+.
T Consensus 2 ~~~fi~~~~~~a~~~~~~~~~~~~~~~aqa~les~wgS~~eS~~ 45 (118)
T 2zyc_A 2 AQAFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGSYEQAFQ 45 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 69999999999999999939798999999999847997999999
No 11
>>3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73; 2.35A {Undefined} (A:26-72,A:139-183)
Probab=96.01 E-value=0.0066 Score=37.83 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 9998532346999999983899889445231002210102
Q gi|254780308|r 107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
-.+|..+....-.++.++|||+|+|++|=..+||.+|+..
T Consensus 5 ~~~FI~~~~p~A~~~~~~~gi~~sv~iAQA~LESgwG~s~ 44 (92)
T 3fi7_A 5 QQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSE 44 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTTST
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999999999995979899999999974799864
No 12
>>3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A {Mycobacterium tuberculosis} PDB: 1xsf_A (A:87-171)
Probab=86.43 E-value=1.4 Score=23.85 Aligned_cols=66 Identities=20% Similarity=0.073 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999864387770003675235786665522444215367899987887898889999999999729888
Q gi|254780308|r 174 YALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTK 243 (288)
Q Consensus 174 a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~ 243 (288)
..|--||-|....-.. --|.-|--||+||||..|+--.- -|+.|.= ++..=++.+-+.+...||..
T Consensus 9 d~ia~cESgGn~~~nt--gnG~yGglQf~~sTW~~~Gg~~y-ag~~~~A-s~~~Qi~~A~~l~~~qG~~a 74 (85)
T 3eo5_A 9 DAIAGCEAGGNWAINT--GNGYYGGVQFDQGTWEANGGLRY-APRADLA-TREEQIAVAEVTRLRQGWGA 74 (85)
T ss_dssp HHHHHHHHTTCTTCCC--SSSCBTTTTBCHHHHHHTTGGGT-CSSGGGS-CHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHCCCCCCCEECC--CCCCEEEEEECHHHHHHCCCCCC-CCCHHHC-CHHHHHHHHHHHHHHCCCCC
T ss_conf 5654112589840037--98866689767767855289767-8890448-99999999999998658884
No 13
>>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:229-300)
Probab=68.25 E-value=1.8 Score=23.20 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHH
Q ss_conf 534589999852
Q gi|254780308|r 250 GEKNFAILKHWN 261 (288)
Q Consensus 250 ~~~n~~~~~~~n 261 (288)
+.+||+||++||
T Consensus 61 ~~~NF~vI~rYN 72 (72)
T 1qus_A 61 GLPNFYTITRYN 72 (72)
T ss_dssp ECHHHHHHHTTS
T ss_pred ECCCHHHHHHHH
T ss_conf 766899998842
No 14
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=68.17 E-value=9.1 Score=18.90 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=35.8
Q ss_pred HHHHHHHHHH----HHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHC
Q ss_conf 3208999999----99999983999899999860877770233320
Q gi|254780308|r 39 ADRFGEWKSA----ARARAVREGMSPKTAKHLFADLEYLDTTIARD 80 (288)
Q Consensus 39 ~~~F~~wl~~----l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~d 80 (288)
..+|.+|+.. +++-|.+-||++..+...=.+-++.|+.|.+.
T Consensus 3 ~e~F~~W~~r~gLsl~~AAeALGisrRmi~YY~~G~r~IPr~I~LA 48 (81)
T 2auw_A 3 HEXFGDWXHRNNLSLTTAAEALGISRRXVSYYRTAHKIIPRTIWLA 48 (81)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999998599999999994999999999977999999899999
No 15
>>1jug_A Lysozyme; calcium-binding; 1.90A {Tachyglossus aculeatus} (A:)
Probab=64.52 E-value=1.1 Score=24.35 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=50.4
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCC
Q ss_conf 99999838998894452310022101025641899998753275315665478999999864387770003675235786
Q gi|254780308|r 119 INLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQ 198 (288)
Q Consensus 119 ~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~G~ 198 (288)
..+..+||||+..++||.-.||.|=- +.+.++.-|| ..+|.
T Consensus 15 ~~a~~~~~v~~~ll~aia~~ESg~n~-------------------------------------~av~~n~nGs--~d~Gl 55 (125)
T 1jug_A 15 QGMNGYQHITLPNWVCTAFHESSYNT-------------------------------------RATNHNTDGS--TDYGI 55 (125)
T ss_dssp TTCTTBTTBCHHHHHHHHHHHHTTBT-------------------------------------TCEEECTTSC--EEETT
T ss_pred CCCCCCCCCCHHHHHHHEHHHHCCCC-------------------------------------CCEECCCCCC--CCCCE
T ss_conf 27689886735431521217317877-------------------------------------4743689998--77564
Q ss_pred CCCCHHHHHHCCCCC-----CCCCCCCCCCC-HHHHHHHHHHHHH-HCCCCC
Q ss_conf 665522444215367-----89998788789-8889999999999-729888
Q gi|254780308|r 199 FQFLPVNVVKYAIDA-----DEDGKIDLVKS-NIDAIASAAKFLA-KLGWTK 243 (288)
Q Consensus 199 ~QFmPs~~~~yavD~-----dgdG~~dl~~~-~~Da~aS~AnyL~-~~GW~~ 243 (288)
||..+..|-..+.-+ -.|.-.+|... ..++..-+...++ ..||+.
T Consensus 56 mQINs~~~~~l~~~~~~~~~l~~~C~nl~~~~~~~~~~~a~~i~~~~~~~~a 107 (125)
T 1jug_A 56 LQINSRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAKGLTP 107 (125)
T ss_dssp TTEETTTTCBCSSCTTCCCTTCSBGGGGSSSCCHHHHHHHHHHHHHHTSSTT
T ss_pred EEECCHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 8863632146999998768679857998375738899999999832368632
No 16
>>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} (A:)
Probab=64.08 E-value=4.1 Score=20.99 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCHHHH---HHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH-HCCCC
Q ss_conf 69999999838998894---452310022101025641899998753275315665478999999864387770-00367
Q gi|254780308|r 116 RLLINLKKEYGVPPGIL---MALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISS-HALGA 191 (288)
Q Consensus 116 ~~L~~ie~~yGV~~~ii---~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~-~~~GS 191 (288)
=.|.++-++||||+..| |||--.||+|-.. -+.. +.-||
T Consensus 6 Cela~al~~~gi~~~~L~~wvcIa~~ES~~nt~-------------------------------------Ain~~~~ngs 48 (120)
T 1iiz_A 6 CGLVNELRKQGFDENLMRDWVCLVENESARYTD-------------------------------------KIANVNKNGS 48 (120)
T ss_dssp HHHHHHHHHTTCCGGGHHHHHHHHHHHTTTBSS-------------------------------------CBCCCCSSSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH-------------------------------------HCCCCCCCCC
T ss_conf 689999998699623489999999987069812-------------------------------------1158689987
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCC---CCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 52357866655224442153678999---87887-89888999999999972988858976
Q gi|254780308|r 192 TFGEIGQFQFLPVNVVKYAIDADEDG---KIDLV-KSNIDAIASAAKFLAKLGWTKCAGYQ 248 (288)
Q Consensus 192 ~aGa~G~~QFmPs~~~~yavD~dgdG---~~dl~-~~~~Da~aS~AnyL~~~GW~~g~~~~ 248 (288)
...|.+|.-...|-+.+.-+-..- --|+- .++.|.+.-++--|+++||+....|+
T Consensus 49 --~dyGLfQINs~~w~~~~~~~~~~c~i~c~~ll~~di~~~~~ca~~i~~~~G~~~W~~w~ 107 (120)
T 1iiz_A 49 --RDYGLFQINDKYWCSKGSTPGKDCNVTCSQLLTDDITVASTCAKKIYKRTKFDAWSGWD 107 (120)
T ss_dssp --CEETTTTEETTTTEESSSSCCSTTCEEGGGGGSSSCHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred --CCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf --44357886132212468547987499878997283677899999999983888773555
No 17
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=57.22 E-value=9.8 Score=18.70 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 0135799999853234699999998389988944
Q gi|254780308|r 100 SSEIIAQGIALKKANSRLLINLKKEYGVPPGILM 133 (288)
Q Consensus 100 s~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~ 133 (288)
++..+..+.+..+...--+.++.+.||||...|-
T Consensus 15 t~e~l~~Ai~aV~~g~mS~~~As~~y~IP~sTL~ 48 (70)
T 2cob_A 15 NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCEEEHHCCCCCCCCCCHHH
T ss_conf 8889999999998354122203753057650111
No 18
>>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} (C:1-79)
Probab=47.43 E-value=9.8 Score=18.68 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHC-----CCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 789999998643-----8777000367523578666552244421536789998788
Q gi|254780308|r 170 EQFFYALDLVKK-----GVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~~-----g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl 221 (288)
.++..+.+..++ |.|+...++.---++|...==...-.-..+|-|+||+++.
T Consensus 9 ~~l~~~F~~fD~D~n~dG~I~~~El~~~l~~lg~~~~~~e~~~~~~~D~~~~G~I~f 65 (79)
T 1wdc_C 9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPF 65 (79)
T ss_dssp HHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTTSCEECH
T ss_pred HHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999773899997599999999999827998688875554430220344545
No 19
>>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} (A:251-382)
Probab=41.63 E-value=8.2 Score=19.16 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCCCHHHCCCCCH
Q ss_conf 88944523100221010256418
Q gi|254780308|r 129 PGILMALWGLETHFGETMGKTPL 151 (288)
Q Consensus 129 ~~ii~AiwGiET~yG~~~G~~~v 151 (288)
..|+-||||-||||-...+..+|
T Consensus 4 eni~dAIWgSesnye~ik~gvnv 26 (132)
T 1xks_A 4 ENITDAIWGSESNYEAIKEGVNI 26 (132)
T ss_dssp HHHHHHHHTTSTTHHHHHTTCEE
T ss_pred HHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 99999875214654466556707
No 20
>>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} (A:22-95)
Probab=41.63 E-value=9.5 Score=18.77 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH----CCCCCHHCCCCCCCCCCCCCCCHHHH--HHCCCCCCCCCCCCC
Q ss_conf 478999999864----38777000367523578666552244--421536789998788
Q gi|254780308|r 169 TEQFFYALDLVK----KGVISSHALGATFGEIGQFQFLPVNV--VKYAIDADEDGKIDL 221 (288)
Q Consensus 169 ~~el~a~l~~~~----~g~~~~~~~GS~aGa~G~~QFmPs~~--~~yavD~dgdG~~dl 221 (288)
++|+..+.+..+ .|.|+.+.+...-+.+|....-+..+ +--.+|-||||.+|.
T Consensus 3 ~~el~~~f~~fd~~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~l~~~~D~d~dg~I~f 61 (74)
T 1fpw_A 3 RREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHF 61 (74)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEH
T ss_conf 99999999999655899973699999999997689984999999999976999696609
No 21
>>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} (A:103-260)
Probab=37.11 E-value=7 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 5367899987887
Q gi|254780308|r 210 AIDADEDGKIDLV 222 (288)
Q Consensus 210 avD~dgdG~~dl~ 222 (288)
..|+||||+.||.
T Consensus 85 v~D~dGDG~~Div 97 (158)
T 2zuy_A 85 VYDLDGDGKAEIA 97 (158)
T ss_dssp EECSSSSSSCEEE
T ss_pred EEECCCCCCEEEE
T ss_conf 6866899860489
No 22
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:143-207)
Probab=36.96 E-value=30 Score=15.73 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCC
Q ss_conf 85323469999999838998894-452310022
Q gi|254780308|r 110 LKKANSRLLINLKKEYGVPPGIL-MALWGLETH 141 (288)
Q Consensus 110 ~~~~~~~~L~~ie~~yGV~~~ii-~AiwGiET~ 141 (288)
.|-+.+..|.++.+..|+++..+ +.||-++|+
T Consensus 29 ~Yle~E~~l~~~a~~~~~~~g~LDl~iWy~~t~ 61 (65)
T 3fhg_A 29 LYISFENILKSIASNLNMSVGILDLFIWYKETN 61 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999877751898699999999999829
No 23
>>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP} (A:58-123)
Probab=36.84 E-value=30 Score=15.72 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 78320899999999999983999899999860877
Q gi|254780308|r 37 DTADRFGEWKSAARARAVREGMSPKTAKHLFADLE 71 (288)
Q Consensus 37 ~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~ 71 (288)
-+...|+..+..+.+...+.|++..+++.++.-+.
T Consensus 21 It~~~Fda~~~~l~~aL~~~gv~~~~~~evl~~l~ 55 (66)
T 2ksc_A 21 LTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVG 55 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 79999999999999999984999999999999998
No 24
>>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A (A:)
Probab=34.07 E-value=12 Score=18.20 Aligned_cols=38 Identities=21% Similarity=0.016 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 95268999999999999998620466443334445678
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDT 38 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~~~~~ 38 (288)
|+.+.+..++++++++.+++++.+.+..+..+..|...
T Consensus 1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 38 (261)
T 2jen_A 1 MKNNHLLKSILLWGAVCIIVLAGPLSAFAASSSNPSDK 38 (261)
T ss_dssp ----------------------------CEEECSTTCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCE
T ss_conf 96306789999999999998615332123442485526
No 25
>>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter} (A:196-359)
Probab=33.94 E-value=15 Score=17.60 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 8764001357999998532346999999983899889445231002210102564
Q gi|254780308|r 95 LDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKT 149 (288)
Q Consensus 95 ~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~ 149 (288)
+-..++..|++-++++-.+....++...+.||++.+-+.-..---..|....|..
T Consensus 38 ~l~~lD~Er~ai~~alg~~~~~~~~~~~~~y~~d~~~l~~~~~~~~~~~~~~~P~ 92 (164)
T 1bg6_A 38 LAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPI 92 (164)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCH
T ss_conf 9999999999999984998277899998503788205888730656767634410
No 26
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=33.56 E-value=33 Score=15.49 Aligned_cols=24 Identities=17% Similarity=-0.133 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 952689999999999999986204
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVT 24 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~ 24 (288)
|++++.++++++++++.++.++..
T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~~~ 24 (396)
T 2vx5_A 1 MSEKPAESAAAVADSATTTAPQSG 24 (396)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 996625667777603443467789
No 27
>>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} (A:38-109)
Probab=32.40 E-value=36 Score=15.29 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCC--CCHHHHHHC--CCCCCCCCCCCC
Q ss_conf 789999998643---8777000367523578666--552244421--536789998788
Q gi|254780308|r 170 EQFFYALDLVKK---GVISSHALGATFGEIGQFQ--FLPVNVVKY--AIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~Q--FmPs~~~~y--avD~dgdG~~dl 221 (288)
.++..+.++++. |.|+.+.+...-.++|... +-+...... .+|.|+||+++.
T Consensus 5 ~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~ 63 (72)
T 3fs7_A 5 DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV 63 (72)
T ss_dssp HHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred HHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEH
T ss_conf 99999999986899881729999999998264667698899997776425799984839
No 28
>>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (A:344-374,A:438-507)
Probab=31.85 E-value=19 Score=16.93 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.3
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 665522444215367899987887
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDGKIDLV 222 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG~~dl~ 222 (288)
.++-|+...-|..|||||- -+++
T Consensus 62 irinp~~c~~fNADFDGDe-Mnih 84 (101)
T 1twf_A 62 FRLNLSVTSPYNADFDGDE-MNLH 84 (101)
T ss_dssp EEECGGGHHHHTCCSSSCE-EEEE
T ss_pred EEECCCCCCCCCCCCCCCE-EEEE
T ss_conf 7742333331145433542-6899
No 29
>>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:344-513)
Probab=30.51 E-value=21 Score=16.70 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.0
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 665522444215367899987887
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDGKIDLV 222 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG~~dl~ 222 (288)
..+-|+...-|..|||||- -+++
T Consensus 123 irl~p~~c~~fNADFDGDe-Mnih 145 (170)
T 1hqm_D 123 IQLHPLVCEAFNADFDGDQ-MAVH 145 (170)
T ss_dssp EEECGGGHHHHCCCSSSCB-CCCC
T ss_pred EECCCCCCCCCCCCCCCCE-EEEE
T ss_conf 5337667787367855633-5662
No 30
>>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand, allergen; 1.75A {Chenopodium album} (A:42-86)
Probab=30.14 E-value=14 Score=17.81 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 536789998788
Q gi|254780308|r 210 AIDADEDGKIDL 221 (288)
Q Consensus 210 avD~dgdG~~dl 221 (288)
-||-||||.+|.
T Consensus 13 EvD~DgdG~Idf 24 (45)
T 2opo_A 13 EIDTDGDGFISF 24 (45)
T ss_dssp HHCTTCSSEECH
T ss_pred HHCCCCCCCEEH
T ss_conf 868999993909
No 31
>>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} (A:1-37,A:151-214)
Probab=30.01 E-value=39 Score=15.04 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCC
Q ss_conf 985323469999999838998894-452310022
Q gi|254780308|r 109 ALKKANSRLLINLKKEYGVPPGIL-MALWGLETH 141 (288)
Q Consensus 109 ~~~~~~~~~L~~ie~~yGV~~~ii-~AiwGiET~ 141 (288)
+.|-+.+..|..+.+..|+++..+ +.||-++|+
T Consensus 64 k~YLelE~~l~eia~~lgi~~g~LDLyiWy~~tg 97 (101)
T 3fhf_A 64 RKYLEIENILRDIGEEVNLKLSELDLYIWYLRTG 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 7899999999987671799989989999999819
No 32
>>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A (A:)
Probab=29.42 E-value=22 Score=16.56 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCC
Q ss_conf 789999998643---8777000367523578666552244421--536789998788
Q gi|254780308|r 170 EQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl 221 (288)
.++..+.+.++. |.|+.+.+...--++|..++-+...... -+|-|+||+++.
T Consensus 7 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~D~d~dg~I~~ 63 (72)
T 2k7c_A 7 KELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDF 63 (72)
T ss_dssp HHHHHHHHHHCCSSSSEECHHHHHHHHHHTTCSSSCHHHHHHHHHHSCCCSSCCEEH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEH
T ss_conf 999999999869995969699999999986398777899999999848999983849
No 33
>>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} (A:37-108)
Probab=29.38 E-value=40 Score=15.02 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCC--CCCHHHHHH--CCCCCCCCCCCCC
Q ss_conf 4789999998643---877700036752357866--655224442--1536789998788
Q gi|254780308|r 169 TEQFFYALDLVKK---GVISSHALGATFGEIGQF--QFLPVNVVK--YAIDADEDGKIDL 221 (288)
Q Consensus 169 ~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~--QFmPs~~~~--yavD~dgdG~~dl 221 (288)
..++..+.+.++. |.|+.+++...--.++.. ++-+..... -.+|.||||+++.
T Consensus 4 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~i~~~~D~d~dg~i~~ 63 (72)
T 1rro_A 4 ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGA 63 (72)
T ss_dssp HHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEH
T ss_pred HHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEH
T ss_conf 999999998466799982829999999998630456699999999999818999993839
No 34
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=29.16 E-value=36 Score=15.25 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 640013579999985323469999999838998894452
Q gi|254780308|r 97 GLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMAL 135 (288)
Q Consensus 97 ~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~Ai 135 (288)
..+++..+...++++..-. ....|.+.|||.+..|--.
T Consensus 4 ~klt~eq~~~a~~l~~~G~-s~~~iA~~~gVSr~TiYr~ 41 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKGH-PRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp CSSCTTHHHHHHHHHHTTC-CHHHHHHTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHH
T ss_conf 8699999999999998799-8999999989799999998
No 35
>>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (A:341-376,A:444-513)
Probab=29.03 E-value=23 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCCCHHHHHHCCCCCCCCC
Q ss_conf 6655224442153678999
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDG 217 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG 217 (288)
.++=|+...-|..|||||-
T Consensus 67 irlnp~vc~~fNADFDGDe 85 (106)
T 3h0g_A 67 FRLNLSVTSPYNADFDGDE 85 (106)
T ss_dssp EEEEGGGSGGGTCCSSSCE
T ss_pred EEECCCCCCCCCCCCCCCE
T ss_conf 6752322431146655652
No 36
>>2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A (A:299-347,A:412-486)
Probab=27.90 E-value=25 Score=16.26 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=17.5
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 665522444215367899987887
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDGKIDLV 222 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG~~dl~ 222 (288)
..+=|+...-|..|||||- .++.
T Consensus 81 irlnp~vc~~fNADFDGDe-Mnih 103 (124)
T 2waq_A 81 FRLNLLVCPPYNADFDGDE-MNLH 103 (124)
T ss_dssp EEECGGGSTTTTCCSSSCE-EEEE
T ss_pred EEEEECCCCCCCCCCCCCE-EEEE
T ss_conf 6742012441026643233-7786
No 37
>>3iyd_D DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (D:331-493)
Probab=27.89 E-value=22 Score=16.61 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.1
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 66552244421536789998788
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDGKIDL 221 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG~~dl 221 (288)
..|-|+...-|..|||||- -++
T Consensus 117 i~lnp~vc~~fNADFDGDe-Mni 138 (163)
T 3iyd_D 117 IQLHPLVCAAYNADFDGDQ-MAV 138 (163)
T ss_dssp EEECSTTHHHHTCCTTTCC-EEE
T ss_pred EEEEECCCCCCCCCCCCCC-EEE
T ss_conf 8871025565456645762-478
No 38
>>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:620-772)
Probab=27.43 E-value=24 Score=16.29 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCCCC-----HHC-CCCCCC------CCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 6547899999986438777-----000-367523------578666552244421536789998788
Q gi|254780308|r 167 FFTEQFFYALDLVKKGVIS-----SHA-LGATFG------EIGQFQFLPVNVVKYAIDADEDGKIDL 221 (288)
Q Consensus 167 ff~~el~a~l~~~~~g~~~-----~~~-~GS~aG------a~G~~QFmPs~~~~yavD~dgdG~~dl 221 (288)
....+....++-+..|++- |.. +.|.-+ .==-..+-|+...-|..|||||- -++
T Consensus 63 ~~~~~~~~~~r~l~~gd~Vl~NRqPtLHr~si~a~~~~~~~~~tirl~p~~c~~fNADFDGDe-Mni 128 (153)
T 2a6h_D 63 DIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQ-MAV 128 (153)
T ss_dssp GCCHHHHHHHHHHSTTCCEEEECSSCCSGGGEEEEEEEEESSSCEEECSGGGTTTTCCTTTCE-EEE
T ss_pred CCCCCCCHHEEEEECCCEEEECCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCE-EEE
T ss_conf 223210100023455988875588863624105778897168525624211344457888866-888
No 39
>>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} (A:36-107)
Probab=27.27 E-value=44 Score=14.75 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHC---CCCCHHCCCCCCCCCCCC--CCCHHHHHH--CCCCCCCCCCCCC
Q ss_conf 789999998643---877700036752357866--655224442--1536789998788
Q gi|254780308|r 170 EQFFYALDLVKK---GVISSHALGATFGEIGQF--QFLPVNVVK--YAIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~--QFmPs~~~~--yavD~dgdG~~dl 221 (288)
.++..+.+.++. |.|+.+++..+--+++.. .+-+..... -.+|-|+||+++.
T Consensus 5 ~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~~i~~~~D~d~dg~i~~ 63 (72)
T 2pvb_A 5 DDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGV 63 (72)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBC
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999867579999571999999999840334449999999999981899999394
No 40
>>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* (A:99-256)
Probab=27.19 E-value=17 Score=17.19 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 15367899987887
Q gi|254780308|r 209 YAIDADEDGKIDLV 222 (288)
Q Consensus 209 yavD~dgdG~~dl~ 222 (288)
...|+||||+.||.
T Consensus 84 ~~~D~ngDG~~Di~ 97 (158)
T 2zux_A 84 MVYDLDGDGKAEVA 97 (158)
T ss_dssp EEECSSSSSSCEEE
T ss_pred EEEECCCCCCCEEE
T ss_conf 39957799953099
No 41
>>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} (A:36-78)
Probab=26.91 E-value=14 Score=17.79 Aligned_cols=12 Identities=58% Similarity=0.886 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 536789998788
Q gi|254780308|r 210 AIDADEDGKIDL 221 (288)
Q Consensus 210 avD~dgdG~~dl 221 (288)
-+|-||||.+|+
T Consensus 11 EiD~DgDG~I~l 22 (43)
T 1k9u_A 11 EIDTDGDGFIDF 22 (43)
T ss_dssp HHCTTCSSSEEH
T ss_pred HHCCCCCCEEEH
T ss_conf 836899990829
No 42
>>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23} (A:108-152)
Probab=26.12 E-value=46 Score=14.62 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 9999999983999899999860
Q gi|254780308|r 47 SAARARAVREGMSPKTAKHLFA 68 (288)
Q Consensus 47 ~~l~~~A~~~Gis~~tl~~~f~ 68 (288)
..++++..++||+..+++.++.
T Consensus 23 ~~I~qeL~qKGI~~~iIe~aL~ 44 (45)
T 3d5l_A 23 GIIRQHLRQKGIGESDIDDALT 44 (45)
T ss_dssp HHHHHHHHHTTCCHHHHHHHGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999986999999999998
No 43
>>2vdr_A Integrin alpha-IIB; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 3fcu_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* (A:291-414)
Probab=25.37 E-value=19 Score=16.89 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 53678999878878
Q gi|254780308|r 210 AIDADEDGKIDLVK 223 (288)
Q Consensus 210 avD~dgdG~~dl~~ 223 (288)
..|+||||+.||.-
T Consensus 73 ~~D~ngDG~~Dlvv 86 (124)
T 2vdr_A 73 LGDLDRDGYNDIAV 86 (124)
T ss_dssp EECSSCSSSCEEEE
T ss_pred EECCCCCCCCEEEE
T ss_conf 76547999825999
No 44
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:62-108)
Probab=25.28 E-value=46 Score=14.61 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 999999998399989999986087
Q gi|254780308|r 47 SAARARAVREGMSPKTAKHLFADL 70 (288)
Q Consensus 47 ~~l~~~A~~~Gis~~tl~~~f~~~ 70 (288)
..++++..++||+.+.++.+|.+.
T Consensus 22 ~rI~qeL~qKGi~~~~Ie~al~~~ 45 (47)
T 3c1d_A 22 ARIRQELNQKGISREATEKAMREA 45 (47)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 999999999808899999999975
No 45
>>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} (A:)
Probab=25.05 E-value=18 Score=17.14 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHC-----CCCCHHCCCCCCCCCCC-CCCCHHHHHHC--CCCCCCCCCCCC
Q ss_conf 789999998643-----87770003675235786-66552244421--536789998788
Q gi|254780308|r 170 EQFFYALDLVKK-----GVISSHALGATFGEIGQ-FQFLPVNVVKY--AIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~~-----g~~~~~~~GS~aGa~G~-~QFmPs~~~~y--avD~dgdG~~dl 221 (288)
.++..+.+.++. |.|+.+.+...-..+|+ .+.-|...... .+|-||||+++.
T Consensus 7 ~~l~~~F~~~D~~~D~~G~Is~~El~~~l~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~f 66 (78)
T 1cb1_A 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66 (78)
T ss_dssp HHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEH
T ss_pred HHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 999999998761789889887999999999975887777999999999980899995979
No 46
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:65-109)
Probab=24.26 E-value=50 Score=14.41 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 9999999983999899999860
Q gi|254780308|r 47 SAARARAVREGMSPKTAKHLFA 68 (288)
Q Consensus 47 ~~l~~~A~~~Gis~~tl~~~f~ 68 (288)
..++++..++||+.+.++.+++
T Consensus 23 ~~IrqeL~qKGI~~~~I~~aLa 44 (45)
T 3e3v_A 23 KVIKLNLSKKGIDDNIAEDALI 44 (45)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999986999999999998
No 47
>>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:274-345)
Probab=23.94 E-value=51 Score=14.37 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 00135799999-8532346999999983899889445231002
Q gi|254780308|r 99 SSSEIIAQGIA-LKKANSRLLINLKKEYGVPPGILMALWGLET 140 (288)
Q Consensus 99 vs~~Ri~~Gr~-~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET 140 (288)
++...+..|-+ .|..+..--+++.++||||++=|+-=.|---
T Consensus 5 vdr~sl~~GyAGVySsFl~ha~raa~~yGVd~rdIl~elGrR~ 47 (72)
T 1nvm_A 5 VDRETLGLGYAGVYSSFLRHAEIAAAKYNLKTLDILVELGHRR 47 (72)
T ss_dssp CCHHHHHHHHHTCCTTHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 9943461665444730554899999874998799998608821
No 48
>>2nl9_A Fusion protein consisting of induced myeloid leukemia cell differentiation protein...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 2pqk_A 1wsx_A 2jm6_B 2roc_A 2rod_A (A:)
Probab=23.87 E-value=51 Score=14.36 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHC--------CCCCHHHCCCCCHHHHHH-HHHCCCCHH
Q ss_conf 76400135799999853234699999998389988944-52310--------022101025641899998-753275315
Q gi|254780308|r 96 DGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILM-ALWGL--------ETHFGETMGKTPLLSTLA-TLAYDCRRA 165 (288)
Q Consensus 96 ~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~-AiwGi--------ET~yG~~~G~~~vl~aLa-TLA~d~RR~ 165 (288)
...+...--..|.++.++|+..|+.+-++..+.++-.. .+..| .+|+|+... +=+++ .||-++.+.
T Consensus 36 ~~~~~~~Lr~~~~el~~~~~~~f~~~~~~l~~~~~~~~~~f~~v~~elf~dg~~nWGRIva----l~~F~~~la~~~~~~ 111 (157)
T 2nl9_A 36 GRRALETLRRVGDGVQRNHETAFQGXLRKLDIKNEDDVKSLSRVXIHVFSDGVTNWGRIVT----LISFGAFVAKHLKTI 111 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHHHHHHHHH
T ss_conf 0389999999999999998999999998748999628999999999997268975578999----999999999999983
Q ss_pred HH--HHHHHHHHH-HHHHCCCCC-HHCCCCCCCCC
Q ss_conf 66--547899999-986438777-00036752357
Q gi|254780308|r 166 KF--FTEQFFYAL-DLVKKGVIS-SHALGATFGEI 196 (288)
Q Consensus 166 ~f--f~~el~a~l-~~~~~g~~~-~~~~GS~aGa~ 196 (288)
.. .-+.++..+ +.+.+..-+ ....|.|.|-+
T Consensus 112 ~~~~~v~~i~~~~~~~l~~~l~~WI~~~GGW~g~~ 146 (157)
T 2nl9_A 112 NQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFV 146 (157)
T ss_dssp CTTCCSHHHHHHHHHHHHHHTHHHHHHTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 88359999999999999975999999868899999
No 49
>>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} (A:294-375)
Probab=22.53 E-value=54 Score=14.20 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCC------------CCHHHHHHHHHHHH
Q ss_conf 998532346999999983899889445231002210102564189999875327------------53156654789999
Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYD------------CRRAKFFTEQFFYA 175 (288)
Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d------------~RR~~ff~~el~a~ 175 (288)
++..+.-+..++.+.++-||++++|+. ..-|+.|..-.+. |=|.++|...|.+.
T Consensus 11 K~~~k~lk~~v~~~ae~~~i~~ellas--------------kk~l~~ll~w~w~~~~~~~~P~lL~GWR~el~g~~l~~l 76 (82)
T 1yt3_A 11 RKAFKAIKSLITDVSETHKISAELLAS--------------RRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNL 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHCC--------------HHHHHHHHHHHTTCSCCSSCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHCCC--------------HHHHHHHHHCCCCCCCCCCCCHHHHCHHHHHHHHHHHHH
T ss_conf 999999999999999995949898499--------------999999982175447643342766010699999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780308|r 176 LD 177 (288)
Q Consensus 176 l~ 177 (288)
|+
T Consensus 77 L~ 78 (82)
T 1yt3_A 77 LQ 78 (82)
T ss_dssp HT
T ss_pred HH
T ss_conf 97
No 50
>>3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} (A:1-27,A:416-473)
Probab=22.38 E-value=55 Score=14.19 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCHHHHHHH-HHCCCC------HHHHHHHHHHHHH-HHHHCCCCCHHC
Q ss_conf 6418999987-532753------1566547899999-986438777000
Q gi|254780308|r 148 KTPLLSTLAT-LAYDCR------RAKFFTEQFFYAL-DLVKKGVISSHA 188 (288)
Q Consensus 148 ~~~vl~aLaT-LA~d~R------R~~ff~~el~a~l-~~~~~g~~~~~~ 188 (288)
+-++-+.|.. -|-|.| |.++|+.-|-..| .++++|.++.++
T Consensus 15 ~~~~~~~~~~~~~TDSRSFLSypRHEyFRRilc~~Lg~~Ve~G~ip~De 63 (85)
T 3iac_A 15 KNDIARTLYHKYATDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDE 63 (85)
T ss_dssp CSHHHHHHHHHTTCCCSCTTTTHHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 8489999999874586001224799999999999999999749888018
No 51
>>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} (A:1-35,A:380-463)
Probab=21.95 E-value=56 Score=14.13 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHH-HHHHCCCCCHHCCCCC
Q ss_conf 531566547899999-9864387770003675
Q gi|254780308|r 162 CRRAKFFTEQFFYAL-DLVKKGVISSHALGAT 192 (288)
Q Consensus 162 ~RR~~ff~~el~a~l-~~~~~g~~~~~~~GS~ 192 (288)
|-|.++|++-|...| .++++|.++.+..+..
T Consensus 73 PaRHEyfRRilc~~Lg~lVe~G~lp~Dea~~i 104 (119)
T 1j5s_A 73 GSRTEMFRRVLSNVVGEMVEKGQIPIKEAREL 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 79999999999999999998699999999999
No 52
>>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Bacteriophage lambda} (A:27-84)
Probab=21.64 E-value=32 Score=15.56 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 6752357866655224442153
Q gi|254780308|r 190 GATFGEIGQFQFLPVNVVKYAI 211 (288)
Q Consensus 190 GS~aGa~G~~QFmPs~~~~yav 211 (288)
|--.-|-|-=||||++|-.|+.
T Consensus 32 ~~~StAAGrYQfL~~tW~~~a~ 53 (58)
T 1am7_A 32 KLKSTGAGRYQLLSRXXDAYRK 53 (58)
T ss_dssp TEEECCBTTTTBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHHHH
T ss_conf 7531024477635367999998
No 53
>>1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, transferase; 1.50A {Bacillus subtilis} (A:1-38,A:229-312)
Probab=21.50 E-value=25 Score=16.26 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=34.9
Q ss_pred CCCCCHH---HCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC-CCCCCC
Q ss_conf 0022101---0256418999987532753156654789999998643877700036752-357866
Q gi|254780308|r 138 LETHFGE---TMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATF-GEIGQF 199 (288)
Q Consensus 138 iET~yG~---~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~a-Ga~G~~ 199 (288)
-|.+=|. |+|. +++.-.+|.+.-.+||.+++..+|. .. ...+-||| ||+|..
T Consensus 45 FEAnTGtenGYQGe----dqiyN~~yYGG~~~fn~~~~~~lln---sd---~~~~As~ANgAiGIl 100 (122)
T 1oyg_A 45 FEANTGTEDGYQGE----ESLFNKAYYGKSTSFFRQESQKLLQ---SD---KKRTAELANGALGMI 100 (122)
T ss_dssp EEEEBCTTSCCSSG----GGGGBGGGTCSCHHHHHHHHHHHHH---ST---THHHHHHCCEEEEEE
T ss_pred EECCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEECC---CC---CCCCCEECCCEEEEE
T ss_conf 94346887764464----2113323456665334454320025---54---444320124169999
No 54
>>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:1-75,A:437-596)
Probab=20.93 E-value=34 Score=15.39 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q ss_conf 67899987887
Q gi|254780308|r 212 DADEDGKIDLV 222 (288)
Q Consensus 212 D~dgdG~~dl~ 222 (288)
|.||||+.|+.
T Consensus 150 DingDG~~Di~ 160 (235)
T 3k6s_A 150 DVNGDKLTDVV 160 (235)
T ss_dssp CSSSSSCCEEE
T ss_pred CCCCCCCCCCE
T ss_conf 32467776521
No 55
>>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* (A:672-754)
Probab=20.36 E-value=60 Score=13.93 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 99986087777023332025666677798999876400135799999853234699999998389988944523100221
Q gi|254780308|r 63 AKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHF 142 (288)
Q Consensus 63 l~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~y 142 (288)
++..+.=+-|+..|+...+.-. .|+..=.+=+.+.++.++ ++.+.+.+..|-.--.+-|++++++--||-.=..|
T Consensus 6 L~~T~Gv~vyQEQvm~i~~~~a-gfs~~eaD~lRrai~kK~----~~~~~~~~~~f~~g~~~~G~~~~~a~~i~~~i~~F 80 (83)
T 2hnh_A 6 LEPTYGIILYQEQVMQIAQVLS-GYTLGGADMLRRAMGKKK----PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 80 (83)
T ss_dssp HGGGTTCCCBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8324782442999987878866-998556899998724476----26678999888755987599999999999999876
Q ss_pred HHH
Q ss_conf 010
Q gi|254780308|r 143 GET 145 (288)
Q Consensus 143 G~~ 145 (288)
|.|
T Consensus 81 a~Y 83 (83)
T 2hnh_A 81 AGY 83 (83)
T ss_dssp HTT
T ss_pred HHC
T ss_conf 111
No 56
>>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=20.35 E-value=37 Score=15.24 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9526899999999999
Q gi|254780308|r 1 MSFKKYLLISLLMMVY 16 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~ 16 (288)
|+.++.+++.++.++.
T Consensus 1 Mk~~~~~~~~~~~~~~ 16 (290)
T 1twy_A 1 MSLIRMALAAVCALLF 16 (290)
T ss_dssp ----------------
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9608999999999999
No 57
>>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A* (A:17-136)
Probab=20.28 E-value=60 Score=13.92 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 567832089999999999998399989999986087777023
Q gi|254780308|r 35 CSDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTT 76 (288)
Q Consensus 35 ~~~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~V 76 (288)
-+-+...|+.|+.-+.+...+.|+++...+.+..-+......
T Consensus 68 l~I~~~~f~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~ 109 (120)
T 2gkm_A 68 RGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVD 109 (120)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998399999999999999999999
No 58
>>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2cxj_A (A:)
Probab=20.13 E-value=27 Score=16.05 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH-----CCCCCHHCCCCCCCCCCC-CCCCHHHH--HHCCCCCCCCCCCCC
Q ss_conf 78999999864-----387770003675235786-66552244--421536789998788
Q gi|254780308|r 170 EQFFYALDLVK-----KGVISSHALGATFGEIGQ-FQFLPVNV--VKYAIDADEDGKIDL 221 (288)
Q Consensus 170 ~el~a~l~~~~-----~g~~~~~~~GS~aGa~G~-~QFmPs~~--~~yavD~dgdG~~dl 221 (288)
.+|..+.+.++ .|.|+.+.+.---.++|. .+.-|... +--.+|-||||++|.
T Consensus 22 ~~l~~~F~~~D~~~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Idf 81 (106)
T 2h2k_A 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKF 81 (106)
T ss_dssp HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEH
T ss_pred HHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf 999999999756689979798999999999865577898899999999975799996979
No 59
>>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:433-550)
Probab=20.11 E-value=37 Score=15.23 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 536789998788
Q gi|254780308|r 210 AIDADEDGKIDL 221 (288)
Q Consensus 210 avD~dgdG~~dl 221 (288)
.+|-|+||++|.
T Consensus 67 ~~D~d~dG~I~~ 78 (118)
T 2qpt_A 67 LSDVDRDGMLDD 78 (118)
T ss_dssp HHCSSCSSSEEH
T ss_pred HHHCCCCCCCCH
T ss_conf 865699899689
Done!