RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic
murein transglycosylase signal peptide protein [Candidatus
Liberibacter asiaticus str. psy62]
         (288 letters)



>gnl|CDD|32773 COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell
           envelope biogenesis, outer membrane].
          Length = 343

 Score =  174 bits (442), Expect = 3e-44
 Identities = 78/243 (32%), Positives = 111/243 (45%), Gaps = 5/243 (2%)

Query: 10  SLLMMVYPMLAQAVTQPKKATTQFI--CSDTADRFGEWKSAARARAVREGMSPKTAKHLF 67
              + +  +LA A T             +     F  W       A   G+S       F
Sbjct: 7   RPALALALLLAAAGTAALAPVLAGAAAAAAAGFAFNAWLQGFAPEAAAAGISAAVLDAAF 66

Query: 68  ADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGV 127
           A + Y    IARDR           ++     S   + QG       +  L   ++ YGV
Sbjct: 67  AGVSYDPRVIARDRP-QPEFRQPVAEFSARRISEARVQQGRGFPAQYAAALARAERRYGV 125

Query: 128 PPGILMALWGLETHFGETMGKTPLLSTLATLAY-DCRRAKFFTEQFFYALDLVKKG-VIS 185
           P  IL+A+WG+ET FG  MGK  +L  LATLA+ D RRA FF ++   AL +++ G V  
Sbjct: 126 PAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDP 185

Query: 186 SHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCA 245
               G+  G +GQ QF+P + +KYA+D D DG  D+  S  DA+ASAA +L   GW +  
Sbjct: 186 LALKGSWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWNSVPDALASAANYLKSHGWDRGR 245

Query: 246 GYQ 248
            + 
Sbjct: 246 PWG 248



 Score = 33.8 bits (77), Expect = 0.051
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 246 GYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVP 281
               G  NF ++  +N S  Y   I  +A  I G P
Sbjct: 304 PAFLGLPNFYVILRYNRSDVYALAIGLLADRIAGAP 339


>gnl|CDD|145150 pfam01832, Glucosaminidase, Mannosyl-glycoprotein
           endo-beta-N-acetylglucosaminidase.  This family includes
           Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
           EC:3.2.1.96. As well as the flageller protein J that has
           been shown to hydrolyse peptidoglycan.
          Length = 136

 Score = 32.3 bits (74), Expect = 0.16
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 119 INLKKEYGVPPGILMALWGLETHFG 143
             L K+YG+PP +L+A   LE+ +G
Sbjct: 6   QKLAKKYGIPPSLLLAQAALESGWG 30


>gnl|CDD|34572 COG4965, TadB, Flp pilus assembly protein TadB [Intracellular
           trafficking and secretion].
          Length = 309

 Score = 28.7 bits (64), Expect = 1.8
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 97  GLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLA 156
            LS+ + + +    +   + L ++L +   +  G  +A+  +            LL  L 
Sbjct: 57  RLSAQDSLKRLDRKQPRQAGLRVSLARLILLSAGAGLAVALVAWLGL------SLLVALV 110

Query: 157 TLAYDC------------RRAKFFTEQFFYALDLVKKGVISSHALGATFGEIG 197
            L                RR K F +Q   ALDL+ + + +   L        
Sbjct: 111 ALIGAALLPRLVLRSRRARRLKRFGQQLPEALDLIVRALRAGAPLPDALRLAA 163


>gnl|CDD|31891 COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 201

 Score = 27.7 bits (61), Expect = 4.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 121 LKKEYGVPPGILMALWGLETHFGETMGKTP 150
           L +EYG+ P I +A   LE+ +G++   + 
Sbjct: 57  LAQEYGILPSITIAQAILESGWGKSELASK 86


>gnl|CDD|48207 cd03421, SirA_like_N, SirA_like_N, a protein of unknown function
           with an N-terminal SirA-like domain.  The SirA, YedF,
           YeeD protein family is present in bacteria as well as
           archaea. SirA  (also known as UvrY,  and YhhP) belongs
           to a family of a two-component response regulators that
           controls secondary metabolism and virulence. The other
           member of this two-component system is a sensor kinase
           called BarA which phosphorylates SirA.  A variety of
           microorganisms have similar proteins, all of which
           contain a common CPxP sequence motif in the N-terminal
           region. YhhP is suggested to be important for normal
           cell division and growth in rich nutrient medium.
           Moreover, despite a low primary sequence similarity,
           the YccP structure closely resembles the non-homologous
           C-terminal RNA-binding domain of E. coli translation
           initiation factor IF3. The signature CPxP motif serves
           to stabilize the N-terminal helix as part of the
           N-capping box and might be important in mRNA-binding..
          Length = 67

 Score = 27.5 bits (61), Expect = 4.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 203 PVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGE 251
           PV   K A++ +  G+I+++  N  A  + ++F    G+      + GE
Sbjct: 12  PVIKTKKALELEAGGEIEVLVDNEVAKENVSRFAESRGYEVSVEEKGGE 60


>gnl|CDD|38051 KOG2840, KOG2840, KOG2840, Uncharacterized conserved protein with
           similarity to predicted ATPase of the PP-loop
           superfamily [General function prediction only].
          Length = 347

 Score = 26.8 bits (59), Expect = 6.9
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 75  TTIARDRKMVTSPP--VSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGIL 132
             + R+      P   VS+KD     +  EI+++     + N       +++       +
Sbjct: 102 EAVKRNGVQYGLPLCIVSYKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADV 161

Query: 133 MALWGLET-HFGETMGKTPLLSTLATLAYDCRRAKFFTEQFF 173
           +    L T H  +   +T L++ L   +    R    T    
Sbjct: 162 LGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSL 203


>gnl|CDD|110528 pfam01531, Glyco_transf_11, Glycosyl transferase family 11.  This
           family contains several fucosyl transferase enzymes.
          Length = 298

 Score = 26.4 bits (58), Expect = 8.8
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 54  VREG----MSPKTAKHLFADLEYLDTTIARDRKMVTSPPV 89
           +R G    + PK  K + AD+ YL   +   R   +SP  
Sbjct: 170 IRRGDYVDVMPKVWKGVVADINYLIQALDWFRARYSSPVF 209


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,428,526
Number of extensions: 174918
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 11
Length of query: 288
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,254,100
Effective search space: 829549500
Effective search space used: 829549500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)