RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]} Length = 322 Score = 101 bits (251), Expect = 1e-22 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 13/233 (5%) Query: 53 AVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPV--------SFKDYLDGLSSSEII 104 + G + + + + + LD+ + + V ++ Y + + + Sbjct: 29 VNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNV 88 Query: 105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRR 164 G+ L + YGVPP I++ + G+ET +G MGKT +L LATL+++ R Sbjct: 89 QNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPR 148 Query: 165 AKFFTEQFFYALDLV--KKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLV 222 + L+ + + G+ G +G QF+P + +YA+D DG I+ + Sbjct: 149 RAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHIN-L 207 Query: 223 KSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAA 275 +DAI S A + GW K G Q +I+ +AA Sbjct: 208 WDPVDAIGSVANYFKAHGWVK--GDQVAVMANGQAPGLPNGFKTKYSISQLAA 258 >d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81 Score = 29.1 bits (65), Expect = 0.48 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKID------LVK 223 E+ F D G ISS LG +G V + ID D DG I + Sbjct: 9 ERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 68 Query: 224 SNIDAIASAAK 234 +N + +K Sbjct: 69 ANRGLVKDVSK 79 >d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68 Score = 28.3 bits (63), Expect = 0.89 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL 221 F D GVI ++G+ V + D D +G ID+ Sbjct: 8 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 58 >d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75 Score = 28.0 bits (62), Expect = 1.1 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221 F D G I LG G+ + + D + DG+ID Sbjct: 12 ANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDF 64 >d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Length = 219 Score = 26.6 bits (58), Expect = 2.3 Identities = 6/48 (12%), Positives = 18/48 (37%) Query: 183 VISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIA 230 ++ H+ F +P N ++ + + + + N D++ Sbjct: 161 IVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGWRLNADSVL 208 >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 Score = 26.7 bits (59), Expect = 2.5 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%) Query: 120 NLKKEYGVPPGILMALWG--LETHFGETM--------GKTPLLSTLATL 158 N+ K Y + I+ AL L GE + GK+ +L+ + L Sbjct: 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 Score = 26.3 bits (57), Expect = 3.0 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%) Query: 30 TTQFICSDTADRFG-EWKSAARARAVREGMSPKTAKH 65 ++ + +++ E A R + EG +P K Sbjct: 1385 DSRLLEGQVLEKWDVE---ALNERLIAEGKTPVAWKP 1418 >d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458 Score = 26.1 bits (57), Expect = 4.0 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 138 LETHFGETMGKTPL-LSTLATLAYDCR-RAKFFTEQFFYALDLVKKGVISSHALGATFGE 195 L + + LS YD +A +F +Q + D + + L A + Sbjct: 87 LRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTED 146 Query: 196 IGQFQFLPVNVVKYAI 211 GQ+ V KY + Sbjct: 147 GGQYSMFLNLVKKYGL 162 >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Score = 26.0 bits (56), Expect = 4.1 Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 48 AARARAVREGMSPKTAKHLFADLEYLDTTIARDRKM 83 AR VR M AK L L + + R + Sbjct: 68 HARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAV 103 >d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81 Score = 25.7 bits (56), Expect = 4.7 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221 F D G I L G+ + + D + DG+ID Sbjct: 18 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY 70 >d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321 Score = 25.7 bits (55), Expect = 4.8 Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 2/64 (3%) Query: 160 YDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDG 217 + D K G +S + + + +D D+ Sbjct: 246 VHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSK 305 Query: 218 KIDL 221 + Sbjct: 306 SLSY 309 >d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Length = 554 Score = 25.3 bits (55), Expect = 5.9 Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 229 IASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHID 278 + AA +A L +K GYQP ++ L N I + ++ Sbjct: 102 LTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLE 151 >d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Length = 129 Score = 25.5 bits (56), Expect = 6.4 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%) Query: 56 EGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKAN- 114 E + A + L+ + ++ + + D +D S QG+ + Sbjct: 10 EQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKN---QGVRFVFGDG 66 Query: 115 SRLLINL 121 SR++ L Sbjct: 67 SRIIFRL 73 >d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77 Score = 25.2 bits (55), Expect = 6.4 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221 + F D G I+ L E+G+ + + D ++D +ID Sbjct: 12 LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 64 >d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87 Score = 24.9 bits (54), Expect = 8.7 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 171 QFFYALDLVKKGVISSHALGATFGEIGQFQFLP-VNVVKYAIDADEDGKIDL 221 + F +D G I+ L +G + + A D D+ G ID Sbjct: 27 ELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 78 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,059,546 Number of extensions: 47454 Number of successful extensions: 162 Number of sequences better than 10.0: 1 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 19 Length of query: 288 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,254,276 Effective search space: 255872304 Effective search space used: 255872304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.1 bits)