RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic
murein transglycosylase signal peptide protein [Candidatus
Liberibacter asiaticus str. psy62]
(288 letters)
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 101 bits (251), Expect = 1e-22
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 13/233 (5%)
Query: 53 AVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPV--------SFKDYLDGLSSSEII 104
+ G + + + + + LD+ + + V ++ Y + + +
Sbjct: 29 VNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNV 88
Query: 105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRR 164
G+ L + YGVPP I++ + G+ET +G MGKT +L LATL+++ R
Sbjct: 89 QNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPR 148
Query: 165 AKFFTEQFFYALDLV--KKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLV 222
+ L+ + + G+ G +G QF+P + +YA+D DG I+ +
Sbjct: 149 RAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHIN-L 207
Query: 223 KSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAA 275
+DAI S A + GW K G Q +I+ +AA
Sbjct: 208 WDPVDAIGSVANYFKAHGWVK--GDQVAVMANGQAPGLPNGFKTKYSISQLAA 258
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium
album) [TaxId: 3559]}
Length = 81
Score = 29.1 bits (65), Expect = 0.48
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKID------LVK 223
E+ F D G ISS LG +G V + ID D DG I +
Sbjct: 9 ERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 68
Query: 224 SNIDAIASAAK 234
+N + +K
Sbjct: 69 ANRGLVKDVSK 79
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
(Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 68
Score = 28.3 bits (63), Expect = 0.89
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL 221
F D GVI ++G+ V + D D +G ID+
Sbjct: 8 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 58
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 28.0 bits (62), Expect = 1.1
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221
F D G I LG G+ + + D + DG+ID
Sbjct: 12 ANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDF 64
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 26.6 bits (58), Expect = 2.3
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 183 VISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIA 230
++ H+ F +P N ++ + + + + N D++
Sbjct: 161 IVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGWRLNADSVL 208
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 2.5
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 120 NLKKEYGVPPGILMALWG--LETHFGETM--------GKTPLLSTLATL 158
N+ K Y + I+ AL L GE + GK+ +L+ + L
Sbjct: 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 3.0
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 30 TTQFICSDTADRFG-EWKSAARARAVREGMSPKTAKH 65
++ + +++ E A R + EG +P K
Sbjct: 1385 DSRLLEGQVLEKWDVE---ALNERLIAEGKTPVAWKP 1418
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 26.1 bits (57), Expect = 4.0
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 138 LETHFGETMGKTPL-LSTLATLAYDCR-RAKFFTEQFFYALDLVKKGVISSHALGATFGE 195
L + + LS YD +A +F +Q + D + + L A +
Sbjct: 87 LRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTED 146
Query: 196 IGQFQFLPVNVVKYAI 211
GQ+ V KY +
Sbjct: 147 GGQYSMFLNLVKKYGL 162
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 333
Score = 26.0 bits (56), Expect = 4.1
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 48 AARARAVREGMSPKTAKHLFADLEYLDTTIARDRKM 83
AR VR M AK L L + + R +
Sbjct: 68 HARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAV 103
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 25.7 bits (56), Expect = 4.7
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221
F D G I L G+ + + D + DG+ID
Sbjct: 18 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY 70
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 25.7 bits (55), Expect = 4.8
Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 2/64 (3%)
Query: 160 YDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDG 217
+ D K G +S + + + +D D+
Sbjct: 246 VHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSK 305
Query: 218 KIDL 221
+
Sbjct: 306 SLSY 309
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 25.3 bits (55), Expect = 5.9
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 229 IASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHID 278
+ AA +A L +K GYQP ++ L N I + ++
Sbjct: 102 LTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLE 151
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 25.5 bits (56), Expect = 6.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 56 EGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKAN- 114
E + A + L+ + ++ + + D +D S QG+ +
Sbjct: 10 EQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKN---QGVRFVFGDG 66
Query: 115 SRLLINL 121
SR++ L
Sbjct: 67 SRIIFRL 73
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 77
Score = 25.2 bits (55), Expect = 6.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQ-FQFLPVNVVKYAIDADEDGKIDL 221
+ F D G I+ L E+G+ + + D ++D +ID
Sbjct: 12 LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 64
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 87
Score = 24.9 bits (54), Expect = 8.7
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 171 QFFYALDLVKKGVISSHALGATFGEIGQFQFLP-VNVVKYAIDADEDGKIDL 221
+ F +D G I+ L +G + + A D D+ G ID
Sbjct: 27 ELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.399
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,546
Number of extensions: 47454
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 19
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)