BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic
murein transglycosylase signal peptide protein [Candidatus
Liberibacter asiaticus str. psy62]
(288 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 595 bits (1533), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP 60
MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP
Sbjct: 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP 60
Query: 61 KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN 120
KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN
Sbjct: 61 KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN 120
Query: 121 LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK 180
LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK
Sbjct: 121 LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK 180
Query: 181 KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG 240
KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG
Sbjct: 181 KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG 240
Query: 241 WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT 288
WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT
Sbjct: 241 WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT 288
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 168 FTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKI 219
F + +++ +V +ISSHA+ +G F F+ + + AI + G I
Sbjct: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTI 317
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 216 DGKIDLVKSNID-AIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIA 274
D +DL+ ++I+ A +A K L L CA +K ILK N L N+ +Y+A
Sbjct: 214 DSALDLIANSIEKAGYNAGKDL--LIALDCAASAFFKKEKYILKGENLELQPNEMASYLA 271
Query: 275 AHIDGVPI 282
+D PI
Sbjct: 272 NLVDQYPI 279
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159
I Q +LKK + LL+ K + V G ++ L G GK+ LL +A L
Sbjct: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGS-----GKSTLLRIIAGLV 67
>gi|254781216|ref|YP_003065629.1| hypothetical protein CLIBASIA_05615 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 38
Score = 23.9 bits (50), Expect = 3.6, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 120 NLKKEYGVPPGILMALWGLE 139
N K G PP I + W +E
Sbjct: 8 NFKGYIGTPPTIFIKFWNIE 27
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 112 KANSRLLINLKKEYGVPPGILMALWGL 138
K+ RLL++L K+ GI LW L
Sbjct: 30 KSFDRLLVDLYKQQKQEQGIFSWLWNL 56
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 171 QFFYALDLVKKGVISSHALGATF 193
QF Y LV G+ S+ LGA F
Sbjct: 74 QFSYIEQLVPAGLAQSYILGAEF 96
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 85 TSPPVSFKDYLDGLSSSEIIAQ--GIALKKA 113
S V F+D +DG+S E I + GIA +K
Sbjct: 1027 VSGTVGFEDLVDGISVIESIGESTGIAKRKV 1057
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,670
Number of Sequences: 1233
Number of extensions: 6663
Number of successful extensions: 24
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 12
length of query: 288
length of database: 328,796
effective HSP length: 73
effective length of query: 215
effective length of database: 238,787
effective search space: 51339205
effective search space used: 51339205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)