HHsearch alignment for GI: 254780309 and conserved domain: TIGR00201
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=99.36 E-value=1.7e-13 Score=94.40 Aligned_cols=54 Identities=43% Similarity=0.546 Sum_probs=48.6
Q ss_pred CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEEEEEE
Q ss_conf 976088251021002897599992004573889999999997-8997899999983
Q gi|254780309|r 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKK-AGAMTVSILTFSR 55 (59)
Q Consensus 1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~-~ga~~V~~~~lar 55 (59)
T Consensus 153 l~n~f~l~~~~-~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~r 207 (207)
T TIGR00201 153 LENAFKLKSKK-KEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLAR 207 (207)
T ss_pred HHHHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf 55666542032-46887558997045101236899999998645700114412069