RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780309|ref|YP_003064722.1| comF family protein
[Candidatus Liberibacter asiaticus str. psy62]
(59 letters)
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine
salvage enzyme; 1.80A {Escherichia coli} (A:9-131)
Length = 123
Score = 37.6 bits (87), Expect = 6e-04
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
N + G ++IDD+ TG TA KA +T+
Sbjct: 57 HDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTI 104
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine
phosphoribosyltransferase; glycosyltransferase, purine
salvage, transferase (glycosyltransferase); HET: 5GP;
1.90A {Tritrichomonas foetus} (A:18-155)
Length = 138
Score = 37.2 bits (86), Expect = 7e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G +L+++D+ TG T L+ ++ + T
Sbjct: 76 IEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCT 113
>1j7j_A HPRT, hypoxanthine phosphoribosyltransferase;
glycosyltransferase, nucleotide metabolism, purine
salvage; 2.30A {Salmonella typhimurium} (A:12-150)
Length = 139
Score = 36.8 bits (85), Expect = 0.001
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G +L+++D+ +G T L +++I T
Sbjct: 79 IRGKDVLIVEDIIDSGNTLSKVREILGLREPKSLAICT 116
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET:
5GP; 2.10A {Leishmania tarentolae} (A:31-176)
Length = 146
Score = 35.4 bits (81), Expect = 0.003
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
V I+L++D+ + T + + ++ +
Sbjct: 85 SVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVV 123
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, magnesium, pyrimidine
biosynthesis; 2.40A {Streptococcus mutans} (A:100-183)
Length = 84
Score = 35.2 bits (81), Expect = 0.003
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
K+++I+D+ +TG + A A ++ GA + ++
Sbjct: 52 KMVIIEDLISTGGSVLDAVAAAQREGADVLGVV 84
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT,
mutant, inhibitor design, selectivity; 1.70A
{Thermoanaerobacter tengcongensis} (A:20-156)
Length = 137
Score = 33.4 bits (76), Expect = 0.012
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G +L+++D+ +G T L ++ I T
Sbjct: 77 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICT 114
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} (A:)
Length = 153
Score = 33.1 bits (75), Expect = 0.013
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+++++DDV TG T + +KK GA + I
Sbjct: 85 RVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIAC 118
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor
complex, Mg IONS, pyrophosphate, transition state
analogue; HET: IMU; 1.75A {Giardia lamblia} (A:60-175)
Length = 116
Score = 32.9 bits (75), Expect = 0.014
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
+++LID+ +G T +K A + +
Sbjct: 57 KEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVK 93
>1vch_A Phosphoribosyltransferase-related protein; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.94A {Thermus thermophilus} (A:)
Length = 175
Score = 32.9 bits (74), Expect = 0.016
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+ +++L+ DV +G T + + +AG V+ L
Sbjct: 118 LLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAV 156
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase;
protein-nucleotide complex; HET: IMP; 2.20A
{Thermoanaerobacter tengcongensis MB4} (A:39-176)
Length = 138
Score = 32.7 bits (74), Expect = 0.017
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G +L+++D+ +G T L ++ I T
Sbjct: 78 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICT 115
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR;
transcription regulation, attenuation protein,
RNA-binding protein, pyrimidine biosynthesis; 1.60A
{Bacillus subtilis} (A:)
Length = 181
Score = 32.8 bits (74), Expect = 0.018
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ K++L+DDV TG T + AL G + L
Sbjct: 96 ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA 133
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} (A:40-184)
Length = 145
Score = 32.6 bits (74), Expect = 0.019
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+++L+DDV T G + + ++ GA +L
Sbjct: 76 ALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLI 113
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} (A:15-160)
Length = 146
Score = 31.2 bits (70), Expect = 0.052
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G +L+++D+ T T ++ +
Sbjct: 83 TRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVV 124
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} (A:)
Length = 216
Score = 30.6 bits (68), Expect = 0.070
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
+++ D + T +T + KA + I+
Sbjct: 126 IPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIV 167
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta,
oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A
{Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
(A:1-20,A:44-207)
Length = 184
Score = 30.8 bits (69), Expect = 0.071
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ +IL+IDDV T G A + A V +
Sbjct: 99 ALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSII 137
>1o57_A PUR operon repressor; purine operon repressor,
helix-turn-helix domain, phosphoribosyltranseferases,
domain recombination, DNA binding; HET: EPE P6G 2PE PG4
1PE; 2.20A {Bacillus subtilis} (A:77-291)
Length = 215
Score = 30.5 bits (68), Expect = 0.078
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
G +L+IDD G T L + A I
Sbjct: 118 KTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGV 155
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase;
glutamine amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} (A:242-459)
Length = 218
Score = 30.2 bits (67), Expect = 0.094
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55
+ V V G +++++DD G T++ L++AGA V + S
Sbjct: 81 EQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSP 135
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine
nucleotide biosynthesis, transcriptional attenuation,
RNA-binding protein; 2.60A {Thermus thermophilus}
(A:11-155)
Length = 145
Score = 30.4 bits (68), Expect = 0.096
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
+ G I+L+DDV TG TA+ A AL G
Sbjct: 84 LTGKAIVLVDDVLYTGRTARAALDALIDLGRPRR 117
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase;
purine biosynthesis, glycosyltransferase, glutamine
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
(A:258-459)
Length = 202
Score = 28.7 bits (63), Expect = 0.27
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55
+LL+DD G T++ ++AGA V + + +
Sbjct: 95 ANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAP 140
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism,
structural genomics, PSI, protein structure initative;
HET: G4P; 1.80A {Bacillus subtilis} (A:)
Length = 197
Score = 27.9 bits (61), Expect = 0.46
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+L+IDD G A +K+AGA I
Sbjct: 117 LSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIV 156
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase;
structural genomics, PSI, protein structure initiative;
1.95A {Streptococcus pyogenes} (A:68-174)
Length = 107
Score = 27.9 bits (62), Expect = 0.46
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
+ G K+++I+D+ +TG + AA A + GA + ++
Sbjct: 48 LKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVV 84
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia,
purine metabolism, catalytic loop; HET: 9DA; 1.85A
{Giardia intestinalis} (A:)
Length = 186
Score = 27.2 bits (59), Expect = 0.75
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
+ +LL DDV TG T A + AG +I
Sbjct: 109 VQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENI 150
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann
fold, glycosyltransferase, magnesium, pyrimidine
biosynthesis, structural genomics; 1.80A {Aeropyrum
pernix} (A:1-10,A:35-178)
Length = 154
Score = 26.9 bits (59), Expect = 1.0
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
V +++++DDV TTG + + L+ G + L
Sbjct: 74 SQVEGDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVL 118
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET:
U5P; 3.00A {Bacillus caldolyticus} (A:1-8,A:70-209)
Length = 148
Score = 26.8 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
V +++D + TG +A A ALKK GA ++ +
Sbjct: 60 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMC 98
>2ehj_A Uracil phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Escherichia coli} (A:)
Length = 208
Score = 26.7 bits (58), Expect = 1.2
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
Q + ++ L++D + TG + LKKAG ++ +
Sbjct: 108 LEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKV 156
>1zn8_A APRT, adenine phosphoribosyltransferase;
glycosyltransferase, polymorphism, purine salvage; HET:
AMP; 1.76A {Homo sapiens} (A:)
Length = 180
Score = 26.4 bits (57), Expect = 1.3
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
G +++++DD+ TG T A L + A + ++
Sbjct: 113 QKDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 156
>2dy0_A APRT, adenine phosphoribosyltransferase; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.25A {Escherichia coli K12}
(A:)
Length = 190
Score = 25.4 bits (54), Expect = 3.1
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ +V G K+L++DD+ TG T + +++ G
Sbjct: 115 QLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAF 161
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens} (A:)
Length = 104
Score = 24.9 bits (54), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 14 HVAGLK----ILLIDDVYTTGATAKCAAIALKKAGA-MTVSIL 51
H AGL+ + I+ V T G T K ++ +G +T+ L
Sbjct: 62 HCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase,
PF01266, NESG, PAR240, structural genomics, PSI-2; HET:
FAD; 1.90A {Pseudomonas aeruginosa PAO1}
(A:1-40,A:123-179,A:298-355)
Length = 155
Score = 24.1 bits (52), Expect = 7.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 35 CAAIALKKAGAMTVSIL 51
A+AL +AG V++L
Sbjct: 18 SCALALHQAGIGKVTLL 34
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii}
(A:143-270)
Length = 128
Score = 23.8 bits (51), Expect = 7.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
+ ++DD+ +TG T A LK+ GA +
Sbjct: 65 DVFIVDDIISTGGTMATAVKLLKEQGAKKIIAA 97
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.131 0.361
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 380,554
Number of extensions: 11315
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 33
Length of query: 59
Length of database: 4,956,049
Length adjustment: 28
Effective length of query: 31
Effective length of database: 4,009,509
Effective search space: 124294779
Effective search space used: 124294779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)