BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780309|ref|YP_003064722.1| comF family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 59

 Score =  120 bits (301), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59
          MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD
Sbjct: 1  MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59


>gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 310

 Score = 29.6 bits (65), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 15  VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVS 49
           V G   +LIDD+  TG T   AA AL + GA++V+
Sbjct: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241


>gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 488

 Score = 24.6 bits (52), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 15  VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
           +AG +++LIDD    G T+      ++ AGA  V +
Sbjct: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390


>gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score = 20.8 bits (42), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59
          G+    + D Y +G T+K     + K G    SI T +  +KD
Sbjct: 12 GVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54


>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score = 20.4 bits (41), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 20  ILLIDDVYTTGATAKCAAIALKKAGAM 46
           I  ID+V+  G    C A   ++ G M
Sbjct: 209 ITYIDEVHAVGIHGSCGAGISEREGIM 235


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,569
Number of Sequences: 1233
Number of extensions: 768
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 328,796
effective HSP length: 31
effective length of query: 28
effective length of database: 290,573
effective search space:  8136044
effective search space used:  8136044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)