Query gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 116 out of 730
Neff 7.9
Searched_HMMs 33803
Date Wed Jun 1 11:56:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780310.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2c2l_A CHIP, carboxy terminus 79.3 1.9 5.6E-05 22.5 3.2 61 23-101 3-69 (74)
2 >1weo_A Cellulose synthase, ca 78.7 1.6 4.7E-05 23.0 2.7 43 21-63 16-71 (93)
3 >2f42_A STIP1 homology and U-b 71.7 4.6 0.00013 20.4 3.5 60 23-100 6-71 (77)
4 >2kre_A Ubiquitin conjugation 68.8 8.6 0.00026 18.9 4.9 60 22-100 30-95 (100)
5 >1zbd_B Rabphilin-3A; G protei 68.4 1 3E-05 24.0 -0.3 33 24-63 1-36 (45)
6 >2jne_A Hypothetical protein Y 67.3 0.52 1.5E-05 25.6 -2.0 38 23-62 34-73 (101)
7 >3knv_A TNF receptor-associate 62.5 2.7 8E-05 21.7 0.9 41 23-63 33-79 (103)
8 >2k0a_A PRE-mRNA-splicing fact 62.1 6.6 0.0002 19.5 2.8 48 22-72 12-63 (66)
9 >1z6u_A NP95-like ring finger 60.5 11 0.00032 18.4 3.6 61 23-100 80-146 (150)
10 >3l11_A E3 ubiquitin-protein l 60.0 7.2 0.00021 19.3 2.7 40 23-62 17-62 (115)
11 >2kr4_A Ubiquitin conjugation 58.5 11 0.00032 18.4 3.4 40 23-63 16-61 (85)
12 >3hcs_A TNF receptor-associate 55.5 4.2 0.00012 20.6 0.9 41 23-63 20-66 (79)
13 >2ecy_A TNF receptor-associate 54.6 9.2 0.00027 18.7 2.5 41 23-63 17-63 (66)
14 >2ckl_A Polycomb group ring fi 54.3 16 0.00048 17.4 3.8 41 22-63 16-63 (84)
15 >1wgm_A Ubiquitin conjugation 53.2 10 0.0003 18.5 2.5 40 23-63 24-70 (98)
16 >1b8t_A Protein (CRP1); LIM do 49.3 12 0.00035 18.1 2.3 38 23-63 3-47 (57)
17 >1b8t_A Protein (CRP1); LIM do 49.2 15 0.00045 17.5 2.9 23 36-61 74-96 (102)
18 >2cs3_A Protein C14ORF4, MY039 46.2 20 0.00061 16.8 3.2 42 22-63 16-71 (93)
19 >1g25_A CDK-activating kinase 44.5 8.2 0.00024 19.0 0.9 42 22-63 4-56 (65)
20 >2csy_A Zinc finger protein 18 44.4 9 0.00027 18.8 1.1 42 22-64 16-63 (81)
21 >2vut_I AREA, nitrogen regulat 43.8 13 0.00038 17.9 1.9 23 21-43 1-30 (43)
22 >1j8f_A SIRT2, sirtuin 2, isof 41.1 7.2 0.00021 19.3 0.2 55 3-60 3-63 (72)
23 >2qiz_A Ubiquitin conjugation 40.8 25 0.00075 16.3 3.0 49 34-101 18-66 (75)
24 >1e4u_A Transcriptional repres 38.8 23 0.00067 16.6 2.5 29 35-63 5-33 (48)
25 >2bay_A PRE-mRNA splicing fact 36.5 11 0.00031 18.4 0.5 40 23-63 5-51 (61)
26 >3htk_C E3 SUMO-protein ligase 35.2 23 0.00069 16.5 2.1 41 23-63 48-98 (132)
27 >1t1h_A Gspef-atpub14, armadil 32.5 22 0.00065 16.7 1.6 36 23-58 10-51 (52)
28 >2egp_A Tripartite motif-conta 32.2 37 0.0011 15.4 2.7 41 23-63 14-66 (79)
29 >2ct2_A Tripartite motif prote 32.1 27 0.00081 16.1 2.0 42 22-63 16-69 (88)
30 >2ecw_A Tripartite motif-conta 31.9 25 0.00074 16.3 1.8 42 23-64 21-73 (85)
31 >2yur_A Retinoblastoma-binding 31.4 21 0.00063 16.7 1.4 41 23-63 17-65 (74)
32 >2ysl_A Tripartite motif-conta 30.9 39 0.0012 15.3 2.7 41 23-63 22-70 (73)
33 >1dgs_A DNA ligase; AMP comple 30.9 18 0.00052 17.2 0.9 15 18-32 85-99 (111)
34 >2fnf_X Putative RAS effector 28.5 22 0.00064 16.7 1.0 26 20-45 34-59 (72)
35 >2ecn_A Ring finger protein 14 28.4 38 0.0011 15.3 2.2 41 22-63 16-61 (70)
36 >2con_A RUH-035 protein, NIN o 28.0 9.3 0.00028 18.7 -1.0 23 37-59 17-39 (79)
37 >1twf_J DNA-directed RNA polym 27.1 25 0.00075 16.3 1.1 16 19-34 2-17 (70)
38 >1ji8_A Dissimilatory siroheme 27.0 34 0.001 15.6 1.7 15 105-119 31-45 (46)
39 >1rmd_A RAG1; V(D)J recombinat 25.7 34 0.001 15.6 1.6 41 23-63 25-71 (76)
40 >2djb_A Polycomb group ring fi 25.5 37 0.0011 15.4 1.7 40 23-63 17-63 (72)
41 >1gnf_A Transcription factor G 25.4 34 0.001 15.6 1.5 22 21-42 4-32 (46)
42 >2waq_N DNA-directed RNA polym 25.1 27 0.00079 16.2 0.9 15 19-33 2-16 (66)
43 >1fbv_A Signal transduction pr 25.1 38 0.0011 15.3 1.7 30 34-63 16-45 (53)
44 >1iym_A EL5; ring-H2 finger, u 25.0 50 0.0015 14.6 3.1 40 21-61 5-54 (55)
45 >2ep4_A Ring finger protein 24 23.9 42 0.0012 15.1 1.8 41 22-63 16-65 (74)
46 >3fl2_A E3 ubiquitin-protein l 23.8 34 0.001 15.6 1.3 36 23-58 1-42 (43)
47 >2fiy_A Protein FDHE homolog; 23.8 14 0.00041 17.8 -0.7 55 23-78 29-113 (154)
48 >2ct0_A Non-SMC element 1 homo 23.6 53 0.0016 14.5 3.3 42 22-63 16-65 (74)
49 >1jm7_B BARD1, BRCA1-associate 23.6 53 0.0016 14.5 4.1 41 20-63 21-68 (117)
50 >1lko_A Rubrerythrin all-iron( 23.6 24 0.00071 16.4 0.5 26 23-61 9-34 (43)
51 >2gmg_A Hypothetical protein P 23.0 36 0.0011 15.4 1.3 28 4-31 45-77 (105)
52 >2d8z_A Four and A half LIM do 22.7 26 0.00077 16.2 0.5 15 20-34 4-18 (42)
53 >1chc_A Equine herpes virus-1 22.3 32 0.00094 15.8 0.9 40 22-62 6-52 (68)
54 >1u5k_A Hypothetical protein; 22.2 28 0.00081 16.1 0.5 24 23-46 70-99 (162)
55 >2kq9_A DNAK suppressor protei 22.1 21 0.00063 16.7 -0.0 23 23-45 3-32 (32)
56 >1rfh_A RAS association (ralgd 22.0 26 0.00078 16.2 0.4 23 20-42 21-43 (59)
57 >2gnr_A Conserved hypothetical 20.6 15 0.00044 17.6 -1.1 24 21-44 47-70 (145)
No 1
>>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} (A:208-281)
Probab=79.29 E-value=1.9 Score=22.52 Aligned_cols=61 Identities=2% Similarity=-0.173 Sum_probs=40.8
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119)
.|++|..... -+...|..|..+.-....+.||.|+.+..... ...+-.++++|.++
T Consensus 3 ~C~IC~~~~~dpv~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~------------------~~~n~~l~~~i~~~ 64 (74)
T 2c2l_A 3 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ------------------LIPNLAMKEVIDAF 64 (74)
T ss_dssp BCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG------------------CEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHC------------------CCCHHHHHHHHHHH
T ss_conf 685202468898637898727899999999878699999969986410------------------86649999999999
Q ss_pred HHCCC
Q ss_conf 44787
Q gi|254780310|r 97 KYHDR 101 (119)
Q Consensus 97 Ky~~~ 101 (119)
|-.+.
T Consensus 65 ~~~~~ 69 (74)
T 2c2l_A 65 ISENG 69 (74)
T ss_dssp HTTCS
T ss_pred HHHCC
T ss_conf 99778
No 2
>>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:)
Probab=78.69 E-value=1.6 Score=22.97 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=29.9
Q ss_pred CCCCCCCCCCC--C-C----------CCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87471037515--6-5----------770288899508676786201244465334
Q gi|254780310|r 21 PSICPIYSRII--N-L----------RFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 21 P~~C~~C~~~~--~-~----------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.+.|.+|+..+ . . +..||..|+..+.--....|+.|..+....
T Consensus 16 ~~~C~iC~e~v~ld~~g~~f~pC~eCgf~iCr~Cy~~~~~eg~~~CP~Cr~~Y~~~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 53100154633527899888875236986450789999851670275448714552
No 3
>>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C (A:103-179)
Probab=71.71 E-value=4.6 Score=20.42 Aligned_cols=60 Identities=3% Similarity=-0.178 Sum_probs=38.5
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119)
.|++|..... -++.+|..|..+.-....+.|+.|+.+...+.. ..+-.++++|..|
T Consensus 6 ~CpIC~~~~~dpv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~~------------------~~n~~l~~~i~~~ 67 (77)
T 2f42_A 6 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL------------------IPNLAMKEVIDAF 67 (77)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC------------------EECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC------------------CCHHHHHHHHHHH
T ss_conf 7813275011224058888276999954760298989798697871238------------------2349999999999
Q ss_pred HHCC
Q ss_conf 4478
Q gi|254780310|r 97 KYHD 100 (119)
Q Consensus 97 Ky~~ 100 (119)
+-.+
T Consensus 68 ~~~~ 71 (77)
T 2f42_A 68 IQEN 71 (77)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9987
No 4
>>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens} (A:)
Probab=68.79 E-value=8.6 Score=18.89 Aligned_cols=60 Identities=2% Similarity=-0.153 Sum_probs=39.8
Q ss_pred CCCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 74710375156------577028889950867678620124446533476089851678435301200021279999999
Q gi|254780310|r 22 SICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRL 95 (119)
Q Consensus 22 ~~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~ 95 (119)
-.|++|..... -++..|..|..+.- -..+.||.|..+...... ..+..++.+|.+
T Consensus 30 ~~C~IC~~~~~~pv~~~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~~l------------------~~~~~l~~~i~~ 90 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESML------------------EPVPELKEQIQA 90 (100)
T ss_dssp TBCTTTCSBCSSEEEETTTEEEEHHHHHHHT-TSCSBCSSSCCBCCTTSS------------------EECHHHHHHHHH
T ss_pred CCCCCCCCHHCCCEECCCCCCCHHHHHHHHH-HCCCCCCCCCCCCCHHHC------------------EECHHHHHHHHH
T ss_conf 7986868741285678999741089999998-168879998888877736------------------011999999999
Q ss_pred HHHCC
Q ss_conf 74478
Q gi|254780310|r 96 LKYHD 100 (119)
Q Consensus 96 ~Ky~~ 100 (119)
|+-..
T Consensus 91 ~~~~~ 95 (100)
T 2kre_A 91 WMREK 95 (100)
T ss_dssp HHHTT
T ss_pred HHHHH
T ss_conf 99980
No 5
>>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (B:58-102)
Probab=68.44 E-value=1 Score=24.01 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCCCCCC---CCCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 71037515---65770288899508676786201244465334
Q gi|254780310|r 24 CPIYSRII---NLRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 24 C~~C~~~~---~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
|++||... .+...+|.+|.+. .|.+||...+.+
T Consensus 1 C~LCG~~fg~lg~~~v~C~DCkk~-------VCtKCgVet~~~ 36 (45)
T 1zbd_B 1 CILCGEQLGXLGSASVVCEDCKKN-------VCTKCGVETSNN 36 (45)
T ss_dssp CSSSCCBCSTTSCCEEECTTTCCE-------EETTSEEECCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCH-------HCCCCCCCCCCC
T ss_conf 955891002889999998688933-------018998875789
No 6
>>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=67.34 E-value=0.52 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCCCCCCCC--CCCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156--577028889950867678620124446533
Q gi|254780310|r 23 ICPIYSRIIN--LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 23 ~C~~C~~~~~--~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
.|+.|+..++ ++..-|..|.+.+. ...+||-|+.++..
T Consensus 34 ~CP~Cq~eL~w~~g~yhC~~C~~~f~--~~a~CPdC~~~Le~ 73 (101)
T 2jne_A 34 HCPQCQHVLDQDNGHARCRSCGEFIE--MKALCPDCHQPLQV 73 (101)
T ss_dssp BCSSSCSBEEEETTEEEETTTCCEEE--EEEECTTTCSBCEE
T ss_pred CCCCCCCCCEECCCCEECHHHHHHHE--EEEECCCCCCHHHH
T ss_conf 58777784145489888156521120--47768761318999
No 7
>>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} (A:1-103)
Probab=62.50 E-value=2.7 Score=21.69 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... =++.+|..|..+.-......|+.|+.+....
T Consensus 33 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~l~~~~~~CP~Cr~~~~~~ 79 (103)
T 3knv_A 33 LCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (103)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99788925409179989985089999999998889778787545666
No 8
>>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae} (A:19-84)
Probab=62.14 E-value=6.6 Score=19.52 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCC--CCEECHHHHHHCCCCCCCCCCCCCC-CCCC-CCCCHHHHCC
Q ss_conf 747103751565--7702888995086767862012444-6533-4760898516
Q gi|254780310|r 22 SICPIYSRIINL--RFCLCGHCWSKIHFITATEHILKNN-KDNI-DKDPLKSMQK 72 (119)
Q Consensus 22 ~~C~~C~~~~~~--~~~lC~~C~~~l~~i~~~~C~~Cg~-~~~~-~~~C~~C~~~ 72 (119)
.+|++|+..+.. ...||.+|--.- ....|..||. +... ..+|.+|.+.
T Consensus 12 GkCpiCDS~Vrp~t~VrICdeCs~G~---~~~rCiiCg~~~g~~dAYYC~eC~~l 63 (66)
T 2k0a_A 12 GKCPICDSYVRPKRKVRVCENCSFGK---QAKNCIICNLNVGVNDAFYCWECCRL 63 (66)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSS---TTSBCTTTSSSBCCEECEECHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEECCCCCCCCCEEHHHHHHH
T ss_conf 85654556568754478888788877---68977881799886630113888754
No 9
>>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} (A:)
Probab=60.54 E-value=11 Score=18.36 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=37.1
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119)
.|++|..... =++.+|.+|..+.--.....||.|..++..... ..-+-.++.+|..|
T Consensus 80 ~C~IC~~~~~dpv~~~CgH~fc~~Ci~~wl~~~~~~CP~CR~~l~~~~~-----------------l~~n~~l~~~i~~~ 142 (150)
T 1z6u_A 80 MCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI-----------------MIPNEILQTLLDLF 142 (150)
T ss_dssp BCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC-----------------CCBCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC-----------------CCCCHHHHHHHHHH
T ss_conf 9938295046967888989721788999998289989873696676556-----------------78789999999998
Q ss_pred HHCC
Q ss_conf 4478
Q gi|254780310|r 97 KYHD 100 (119)
Q Consensus 97 Ky~~ 100 (119)
+=.+
T Consensus 143 ~~~~ 146 (150)
T 1z6u_A 143 FPGY 146 (150)
T ss_dssp STTT
T ss_pred CCCC
T ss_conf 7563
No 10
>>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} (A:)
Probab=59.99 E-value=7.2 Score=19.33 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------577028889950867678620124446533
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
.|++|..... =++.+|..|..+.-......||.|..+...
T Consensus 17 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~l~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCEECHHHHHHHTTTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9968882108817805996278999999999880929898886853
No 11
>>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} (A:)
Probab=58.50 E-value=11 Score=18.35 Aligned_cols=40 Identities=3% Similarity=-0.028 Sum_probs=28.7
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... -++.+|..|..+.- -....|+.|+.+....
T Consensus 16 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~ 61 (85)
T 2kr4_A 16 RDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTES 61 (85)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCEECCCCCEEEHHHHHHHH-HCCCCCCCCCCCCCHH
T ss_conf 885868814598886999986099999999-7699897987988856
No 12
>>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} (A:1-79)
Probab=55.50 E-value=4.2 Score=20.63 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... -++..|..|..+.-......||.|+.+....
T Consensus 20 ~C~IC~~~~~dpv~~~CgH~fC~~Ci~~~l~~~~~~CP~Cr~~~~~~ 66 (79)
T 3hcs_A 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (79)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCHHHCCEECCCCCCEECCHHHHHHHHCCCCCCCCCCEECCC
T ss_conf 99898915419188789975305189999984476777786500114
No 13
>>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=54.58 E-value=9.2 Score=18.74 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... -++..|.+|..+.-......||.|..+....
T Consensus 17 ~C~IC~~~~~~pv~~~CgH~fc~~Ci~~~l~~~~~~CP~Cr~~i~~~ 63 (66)
T 2ecy_A 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp ECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99587813148657779998778999999997889897648997720
No 14
>>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A (A:1-84)
Probab=54.32 E-value=16 Score=17.39 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=28.6
Q ss_pred CCCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156-------5770288899508676786201244465334
Q gi|254780310|r 22 SICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
..|++|..... -++.+|.+|..+.- .....|+.|+.+.+..
T Consensus 16 ~~C~IC~~~~~~pv~~~~CgH~fc~~Ci~~~l-~~~~~CP~Cr~~~~~~ 63 (84)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKT 63 (84)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-TSCSBCTTTCCBSCSS
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCC
T ss_conf 99977895653787689999743799999998-0499999985551557
No 15
>>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=53.24 E-value=10 Score=18.51 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCCCCCCCCC------C-CCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5-770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------L-RFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~-~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... . ++.+|..|..+.- -....||.|+.+....
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~ 70 (98)
T 1wgm_A 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMD 70 (98)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-TTSCBCTTTCSBCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCC
T ss_conf 9837034887688721120174499999998-6178777653545432
No 16
>>1b8t_A Protein (CRP1); LIM domain, muscle differentiation; NMR {Gallus gallus} (A:34-90)
Probab=49.29 E-value=12 Score=18.14 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred CCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 47103751565-------770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
+|..|++.+.. +.+.|..|..++- .+.|..|+.+....
T Consensus 3 ~C~~C~~~L~~~~f~~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~~ 47 (57)
T 1b8t_A 3 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKY---GPKGKGKGMGAGTL 47 (57)
T ss_dssp BCTTTCCBCCSSSEEEETTEEEEHHHHHHHH---SCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCEECCCCEEEEHHHHHHHC---CCCCCCCCCCCCCC
T ss_conf 4477898568982116499750088887632---87423356466642
No 17
>>1b8t_A Protein (CRP1); LIM domain, muscle differentiation; NMR {Gallus gallus} (A:91-192)
Probab=49.21 E-value=15 Score=17.52 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=9.7
Q ss_pred EECHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 02888995086767862012444653
Q gi|254780310|r 36 CLCGHCWSKIHFITATEHILKNNKDN 61 (119)
Q Consensus 36 ~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119)
.+|..|..++- .+.|..|+.+..
T Consensus 74 ~yC~~cy~~~~---~~~C~~C~~~i~ 96 (102)
T 1b8t_A 74 IYCKGCYAKNF---GPKGFGFGQGAG 96 (102)
T ss_dssp EEEHHHHHHHT---CCCCCCCCCCCC
T ss_pred EECHHHHHHHC---CCCCCCCCCCCC
T ss_conf 88977867661---704767888867
No 18
>>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=46.20 E-value=20 Score=16.81 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCC----------CCEECHHHHHHCC----CCCCCCCCCCCCCCCCC
Q ss_conf 747103751565----------7702888995086----76786201244465334
Q gi|254780310|r 22 SICPIYSRIINL----------RFCLCGHCWSKIH----FITATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~~----------~~~lC~~C~~~l~----~i~~~~C~~Cg~~~~~~ 63 (119)
-.|++|...... ++.+|.+|..+.- ......||.|..+....
T Consensus 16 ~~C~IC~~~~~~p~~~~c~~~CgH~FC~~Ci~~~l~~~~~~~~~~CP~Cr~~~~~~ 71 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVG 71 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSS
T ss_pred EEEEEEHHHHCCCCEEECCCCCCCCEECCCCHHHHHHCCCCCCEECCCCCCCCCCC
T ss_conf 45510154623772565788766702613468999842789737788988465689
No 19
>>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} (A:)
Probab=44.51 E-value=8.2 Score=19.01 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred CCCCCCCCCCC-----------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156-----------5770288899508676786201244465334
Q gi|254780310|r 22 SICPIYSRIIN-----------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~-----------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
-.|++|-.... =++.+|.+|+.+.-......||.|..+....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCCCCCCCC
T ss_conf 67886542233684442456652317888878874210478897678823215
No 20
>>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=44.45 E-value=9 Score=18.78 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156------57702888995086767862012444653347
Q gi|254780310|r 22 SICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDK 64 (119)
Q Consensus 22 ~~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~ 64 (119)
..|++|..... =++.+|.+|+.+.- ...+.||.|..+.....
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~l-~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHF-RATPRCYICDQPTGGIF 63 (81)
T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHHHHHHHH-HHCSBCSSSCCBCCSCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCC
T ss_conf 6474402303581775669820599999999-74992889895652744
No 21
>>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} (I:)
Probab=43.76 E-value=13 Score=17.91 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=16.2
Q ss_pred CCCCCCCCCC-------CCCCCEECHHHHH
Q ss_conf 8747103751-------5657702888995
Q gi|254780310|r 21 PSICPIYSRI-------INLRFCLCGHCWS 43 (119)
Q Consensus 21 P~~C~~C~~~-------~~~~~~lC~~C~~ 43 (119)
|..|..|+.. ..++..||..|--
T Consensus 1 P~~C~nCgtt~Tp~WRrg~~g~~LCNACGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 981788989688443429998983245658
No 22
>>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:1-21,A:154-204)
Probab=41.10 E-value=7.2 Score=19.32 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH------HCCCCCCCCCCCCCCCCEECHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8999999999999998------578747103751565770288899508676786201244465
Q gi|254780310|r 3 AIIQTVKSIIIELFHC------IYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKD 60 (119)
Q Consensus 3 ~~~~~ik~~~~~ll~~------lfP~~C~~C~~~~~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~ 60 (119)
+-+..+++++.+-+++ ++-.+|.-|++....+...-.+ ++.-...|.|+.||-..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~HGsl~~~~C~~Cg~~~~~~~~~~~~---~i~~~~~P~Cp~CGGil 63 (72)
T 1j8f_A 3 ADMDFLRNLFSQTLSLGSQHGTFYTSHCVSASCRHEYPLSWMKE---KIFSEVTPKCEDCQSLV 63 (72)
T ss_dssp HHHHHHHHHC---------TEEEEEEEESCTTTCCEECHHHHHH---HHHTTCCCBCTTTCCBE
T ss_pred CCHHHHHHHHHHHCCCCCCHCCCCEEEECCCCCCCCCCHHHHHH---HHCCCCCCCCCCCCCCC
T ss_conf 50899999999760567860675324775789986555166665---54046788887679845
No 23
>>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:908-982)
Probab=40.83 E-value=25 Score=16.29 Aligned_cols=49 Identities=2% Similarity=-0.058 Sum_probs=30.4
Q ss_pred CCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 77028889950867678620124446533476089851678435301200021279999999744787
Q gi|254780310|r 34 RFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDR 101 (119)
Q Consensus 34 ~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~Ky~~~ 101 (119)
++..|..|..+.- .....||.|+.+...... .-+-.++++|.+|+-...
T Consensus 18 gH~fc~~Ci~~~l-~~~~~CP~Cr~~~~~~~l------------------~~n~~l~~~i~~~~~~~~ 66 (75)
T 2qiz_A 18 KMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDV------------------TPNEELRQKILCFKKQKK 66 (75)
T ss_dssp CCEEEHHHHHHHH-TTCCBCTTTCCBCCGGGC------------------EECHHHHHHHHHHHHHTC
T ss_pred CCEECHHHHHHHH-CCCCCCCCCCCCCCHHHC------------------CCCHHHHHHHHHHHHHHH
T ss_conf 9847699999997-479989988798999986------------------867999999999999999
No 24
>>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} (A:31-78)
Probab=38.77 E-value=23 Score=16.57 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=22.7
Q ss_pred CEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 70288899508676786201244465334
Q gi|254780310|r 35 FCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 35 ~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
..||.-||..+....+..||.|..+.+.+
T Consensus 5 yqiC~fC~~~Ik~~~~grCPaCR~~Y~e~ 33 (48)
T 1e4u_A 5 YQICRFCWHRIRTDENGLCPACRKPYPED 33 (48)
T ss_dssp CCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 87389999998663799883849878866
No 25
>>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=36.49 E-value=11 Score=18.40 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156-------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... -+..+|.+|+.+.- .....||.|+.+....
T Consensus 5 ~C~IC~~~~~~pv~~~~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 51 (61)
T 2bay_A 5 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYV-KDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHH-HHHSBCTTTCCBCCGG
T ss_pred ECCCCCCHHHHHHCCCCCCCEECHHHHHHHH-CCCCCCCCCCCCCCHH
T ss_conf 8049793787411112599385388887775-0335688758828789
No 26
>>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (C:136-267)
Probab=35.22 E-value=23 Score=16.50 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=26.4
Q ss_pred CCCCCCCCCC------C-CCEECHHHHHHCCCCCC---CCCCCCCCCCCCC
Q ss_conf 4710375156------5-77028889950867678---6201244465334
Q gi|254780310|r 23 ICPIYSRIIN------L-RFCLCGHCWSKIHFITA---TEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~-~~~lC~~C~~~l~~i~~---~~C~~Cg~~~~~~ 63 (119)
.|++|..... . ++..|.+|....-.... ..||.|+.+....
T Consensus 48 ~CpIC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 98 (132)
T 3htk_C 48 TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 98 (132)
T ss_dssp BCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 892817077464335658876879999999986799999987447988889
No 27
>>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} (A:1-52)
Probab=32.48 E-value=22 Score=16.65 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=24.7
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4710375156------57702888995086767862012444
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNN 58 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~ 58 (119)
.|++|..... -++..|..|..+.-......||.|..
T Consensus 10 ~C~IC~~~~~~pv~~~CgH~fc~~Ci~~~l~~~~~~CP~Cr~ 51 (52)
T 1t1h_A 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQE 51 (52)
T ss_dssp SCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCC
T ss_pred CCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 991708220242165688561699999999988886898767
No 28
>>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} (A:)
Probab=32.19 E-value=37 Score=15.38 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCCCCCCCCC------CCEECHHHHHHCCCC------CCCCCCCCCCCCCCC
Q ss_conf 47103751565------770288899508676------786201244465334
Q gi|254780310|r 23 ICPIYSRIINL------RFCLCGHCWSKIHFI------TATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~~------~~~lC~~C~~~l~~i------~~~~C~~Cg~~~~~~ 63 (119)
.|++|.....+ ++.+|.+|..+.-.. ....|+.|..+....
T Consensus 14 ~CpIC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 14 TCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp EETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99072916566766888873729999999997300257767289888987745
No 29
>>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=32.07 E-value=27 Score=16.11 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCC----------CCEECHHHHHHCCCCCC--CCCCCCCCCCCCC
Q ss_conf 747103751565----------77028889950867678--6201244465334
Q gi|254780310|r 22 SICPIYSRIINL----------RFCLCGHCWSKIHFITA--TEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~~----------~~~lC~~C~~~l~~i~~--~~C~~Cg~~~~~~ 63 (119)
..|++|-..... ++.+|.+|..+.-.... ..||.|..+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECC
T ss_conf 899817733336774417558999731799999999689986999999861077
No 30
>>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=31.89 E-value=25 Score=16.32 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCC-----CCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676-----7862012444653347
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFI-----TATEHILKNNKDNIDK 64 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i-----~~~~C~~Cg~~~~~~~ 64 (119)
.|++|..... =++.+|..|..+.-.. ....||.|..+.....
T Consensus 21 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 21 TCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp SCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98171843669478889996649999999997525688898711278476110
No 31
>>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} (A:)
Probab=31.44 E-value=21 Score=16.70 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCCCCCCCCC------C-CCEECHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 4710375156------5-770288899508676-786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------L-RFCLCGHCWSKIHFI-TATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~-~~~lC~~C~~~l~~i-~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... . .+.+|.+|..+.-.. ....|+.|..+....
T Consensus 17 ~C~IC~~~~~~p~~~~~C~H~fc~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCHHHHCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9967890760950827789844999999999807997590989958687
No 32
>>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=30.95 E-value=39 Score=15.26 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCC--CCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676--786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFI--TATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i--~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... =++.+|..|..+.-.. ..+.||.|..+....
T Consensus 22 ~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~l~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp BCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 9857682029928998998200999999999779988898988999345
No 33
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:316-426)
Probab=30.85 E-value=18 Score=17.16 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=7.8
Q ss_pred HHCCCCCCCCCCCCC
Q ss_conf 857874710375156
Q gi|254780310|r 18 CIYPSICPIYSRIIN 32 (119)
Q Consensus 18 ~lfP~~C~~C~~~~~ 32 (119)
+.+|..|+.|+..+.
T Consensus 85 ~~~P~~CP~C~s~l~ 99 (111)
T 1dgs_A 85 IRWPEACPECGHRLV 99 (111)
T ss_dssp CCCCSBCTTTCCBCE
T ss_pred CCCCCCCCCCCCEEE
T ss_conf 879998999899801
No 34
>>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus} (X:)
Probab=28.53 E-value=22 Score=16.68 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCEECHHHHHHC
Q ss_conf 78747103751565770288899508
Q gi|254780310|r 20 YPSICPIYSRIINLRFCLCGHCWSKI 45 (119)
Q Consensus 20 fP~~C~~C~~~~~~~~~lC~~C~~~l 45 (119)
.|..|-.|++.+-.++..|.+|--..
T Consensus 34 ~~t~C~~C~~~l~~qg~~C~~C~~~~ 59 (72)
T 2fnf_X 34 GPGWCDLCGREVLRQALRCANCKFTC 59 (72)
T ss_dssp SCCBCTTTSSBCSSCCEECTTSSCEE
T ss_pred CCCCCHHHCCHHHHCCCCCCCCCCHH
T ss_conf 99686120704675764658699957
No 35
>>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.44 E-value=38 Score=15.35 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=28.2
Q ss_pred CCCCCCCCCCC-----CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156-----5770288899508676786201244465334
Q gi|254780310|r 22 SICPIYSRIIN-----LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~-----~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
..|++|-.... =.+.+|..|..+.- -+...||.|..+....
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~l-~~~~~CP~Cr~~i~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWS-DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSS-CCCSSCHHHHHCTTCC
T ss_pred CCCEEECCCCCCEEECCCCEECHHHHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 979553778868687889910489999999-8688689549686778
No 36
>>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=28.03 E-value=9.3 Score=18.70 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=18.4
Q ss_pred ECHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 28889950867678620124446
Q gi|254780310|r 37 LCGHCWSKIHFITATEHILKNNK 59 (119)
Q Consensus 37 lC~~C~~~l~~i~~~~C~~Cg~~ 59 (119)
-|..|+.-.+-.+..+|+.||..
T Consensus 17 rC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 17 RCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp ECSSSCCEESCSSCCSCSSSCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCC
T ss_conf 64233558688766627436988
No 37
>>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (J:)
Probab=27.08 E-value=25 Score=16.31 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.2
Q ss_pred HCCCCCCCCCCCCCCC
Q ss_conf 5787471037515657
Q gi|254780310|r 19 IYPSICPIYSRIINLR 34 (119)
Q Consensus 19 lfP~~C~~C~~~~~~~ 34 (119)
+.|-+|-.||+.+++.
T Consensus 2 iiPVRCFTCGkvig~~ 17 (70)
T 1twf_J 2 IVPVRCFSCGKVVGDK 17 (70)
T ss_dssp CCCSBCTTTCCBCTTC
T ss_pred CCCCCCCCCCCCHHHH
T ss_conf 8885657898681888
No 38
>>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} (A:1-46)
Probab=27.01 E-value=34 Score=15.61 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999997429
Q gi|254780310|r 105 AIMMAQWMFRVLEKI 119 (119)
Q Consensus 105 a~~la~~m~r~~~~i 119 (119)
-.-.|+||+|.++-|
T Consensus 31 ~ekvaew~arelegi 45 (46)
T 1ji8_A 31 DEKVAEWLARELEGI 45 (46)
T ss_dssp CHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHCCCCC
T ss_conf 999999999731483
No 39
>>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} (A:1-76)
Probab=25.75 E-value=34 Score=15.56 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... =++.+|..|..+.-......|+.|..+....
T Consensus 25 ~C~IC~~~~~~p~~~~CgH~fc~~Ci~~wl~~~~~~CP~Cr~~i~~~ 71 (76)
T 1rmd_A 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (76)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 91016901038553797980719999999998819698889838876
No 40
>>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=25.53 E-value=37 Score=15.39 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156-------5770288899508676786201244465334
Q gi|254780310|r 23 ICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 23 ~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
.|++|..... =++.+|..|..+.- -....||.|..+....
T Consensus 17 ~C~IC~~~~~~~v~~~~CgH~fc~~Ci~~~l-~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 17 LCSICKGYLIDATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVVHQT 63 (72)
T ss_dssp SCTTTSSCCSSCEECSSSCCEECHHHHHHHH-HHCSSCTTTCCCCCSS
T ss_pred EEEECCCCCCCCEEECCCCCEECHHHHHHHH-HCCCCCCCCCCCCCCC
T ss_conf 9161595110983978999757629999999-8599196929665769
No 41
>>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} (A:)
Probab=25.43 E-value=34 Score=15.56 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCCCCCCCC-------CCCCEECHHHH
Q ss_conf 87471037515-------65770288899
Q gi|254780310|r 21 PSICPIYSRII-------NLRFCLCGHCW 42 (119)
Q Consensus 21 P~~C~~C~~~~-------~~~~~lC~~C~ 42 (119)
|..|..|+... .++..||..|-
T Consensus 4 ~~~C~nCgtt~Tp~WR~gp~g~~LCNACG 32 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACG 32 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCHHHHHH
T ss_conf 00110367747602121688870255667
No 42
>>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N (N:)
Probab=25.15 E-value=27 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.6
Q ss_pred HCCCCCCCCCCCCCC
Q ss_conf 578747103751565
Q gi|254780310|r 19 IYPSICPIYSRIINL 33 (119)
Q Consensus 19 lfP~~C~~C~~~~~~ 33 (119)
+.|-+|--||+.+++
T Consensus 2 iiPVRCFTCGkvig~ 16 (66)
T 2waq_N 2 MIPIRCFTCGSLIAD 16 (66)
T ss_dssp CCCSSCTTTCCCCGG
T ss_pred CCCCCCCCCCCCHHH
T ss_conf 887465778604799
No 43
>>1fbv_A Signal transduction protein CBL; CBL, ZAP-70, phosphorylation, tyrosine kinase, ubiquitination, protein degradation,, ligase; HET: PTR; 2.90A {Homo sapiens} (A:336-388)
Probab=25.11 E-value=38 Score=15.31 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=22.8
Q ss_pred CCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 770288899508676786201244465334
Q gi|254780310|r 34 RFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 34 ~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
++..|..|..+.-......||.|..+....
T Consensus 16 gH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 45 (53)
T 1fbv_A 16 GHLMCTSCLTSWQESEGQGCPFCRCEIKGT 45 (53)
T ss_dssp CCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 107878999887445899898633253264
No 44
>>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} (A:)
Probab=24.96 E-value=50 Score=14.64 Aligned_cols=40 Identities=8% Similarity=-0.058 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCC----------CCEECHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8747103751565----------7702888995086767862012444653
Q gi|254780310|r 21 PSICPIYSRIINL----------RFCLCGHCWSKIHFITATEHILKNNKDN 61 (119)
Q Consensus 21 P~~C~~C~~~~~~----------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119)
+..|++|-..+.. .+.+|.+|..+.-. ....||.|-.+..
T Consensus 5 ~~~C~ICl~~~~~~~~~~~~~~C~h~fh~~Ci~~w~~-~~~~CP~Cr~~i~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCEEECCEEECCCEEEECCCCCCEECHHHHHHHHH-HCCCCCCCCCEEE
T ss_conf 9998679948557987898089898776999999997-1991817497858
No 45
>>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=23.86 E-value=42 Score=15.08 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCC---------CCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 747103751565---------770288899508676786201244465334
Q gi|254780310|r 22 SICPIYSRIINL---------RFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~~---------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
..|++|...... .+.+|..|..+.- .....|+.|..+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHH-HHCSBCTTTCCBCSSC
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 9965159786179847875689977599999999-8599286869563643
No 46
>>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} (A:54-96)
Probab=23.84 E-value=34 Score=15.58 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=24.1
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4710375156------57702888995086767862012444
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNN 58 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~ 58 (119)
.|++|..... =++.+|.+|..+.-......||.|..
T Consensus 1 ~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 42 (43)
T 3fl2_A 1 QCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRY 42 (43)
T ss_dssp BCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 984859076657647889852388999999848898968799
No 47
>>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} (A:1-26,A:182-309)
Probab=23.76 E-value=14 Score=17.77 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCCCCCCC-----C-C---CC---CEECHHHHHHCCCCCCCCCCCCCCCCCC------------------CCCCHHHHCC
Q ss_conf 47103751-----5-6---57---7028889950867678620124446533------------------4760898516
Q gi|254780310|r 23 ICPIYSRI-----I-N---LR---FCLCGHCWSKIHFITATEHILKNNKDNI------------------DKDPLKSMQK 72 (119)
Q Consensus 23 ~C~~C~~~-----~-~---~~---~~lC~~C~~~l~~i~~~~C~~Cg~~~~~------------------~~~C~~C~~~ 72 (119)
.|++||.. + . .+ ...|.-|..+.++ ....|+.||..... -..|..|..-
T Consensus 29 ~CPVCGs~P~ls~L~~~~~~~G~R~L~CslC~teW~~-~R~~Cp~CG~~~~~~l~~~~~e~~p~~~~~~Rve~C~~C~~Y 107 (154)
T 2fiy_A 29 LCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGY 107 (154)
T ss_dssp SCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEE
T ss_pred CCCCCCCCCHHHHEECCCCCCCCEEEECCCCCCCCCE-ECCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCE
T ss_conf 6989998012151013677788668877998885523-277684999999753477724777565445677776677886
Q ss_pred CCCHHH
Q ss_conf 784353
Q gi|254780310|r 73 DLPLTQ 78 (119)
Q Consensus 73 ~~~f~~ 78 (119)
-..+|+
T Consensus 108 lK~id~ 113 (154)
T 2fiy_A 108 LKQFYL 113 (154)
T ss_dssp EEEEET
T ss_pred EEEEEC
T ss_conf 767621
No 48
>>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.63 E-value=53 Score=14.50 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCC-------CCEECHHHHHHCCCCC-CCCCCCCCCCCCCC
Q ss_conf 747103751565-------7702888995086767-86201244465334
Q gi|254780310|r 22 SICPIYSRIINL-------RFCLCGHCWSKIHFIT-ATEHILKNNKDNID 63 (119)
Q Consensus 22 ~~C~~C~~~~~~-------~~~lC~~C~~~l~~i~-~~~C~~Cg~~~~~~ 63 (119)
..|++|-..... .+.+|..|..+.-... ...|+.|..+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCEECCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99902875077887879999805858999999976898498887807465
No 49
>>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} (B:)
Probab=23.62 E-value=53 Score=14.50 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 7874710375156-------5770288899508676786201244465334
Q gi|254780310|r 20 YPSICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119)
Q Consensus 20 fP~~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119)
-.-.|++|-.... =++.+|..|+.++- ...|+.|..+....
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~l---~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT---TTBCSSSCCBCSCS
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH---HCCCCCCCCCCCHH
T ss_conf 5799888983004972768999876899999999---65498888917788
No 50
>>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} (A:149-191)
Probab=23.56 E-value=24 Score=16.42 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 471037515657702888995086767862012444653
Q gi|254780310|r 23 ICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDN 61 (119)
Q Consensus 23 ~C~~C~~~~~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119)
+|.+||-....+. .+..||.||.|.+
T Consensus 9 ~C~~CGyi~~G~~-------------aP~~CPvC~~~~~ 34 (43)
T 1lko_A 9 RCRNCGYVHEGTG-------------APELCPACAHPKA 34 (43)
T ss_dssp EETTTCCEEEEEE-------------CCSBCTTTCCBGG
T ss_pred ECCCCCCEEECCC-------------CCCCCCCCCCCHH
T ss_conf 8899986201899-------------9885989999669
No 51
>>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} (A:)
Probab=23.01 E-value=36 Score=15.43 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHH-----HHCCCCCCCCCCCC
Q ss_conf 99999999999999-----85787471037515
Q gi|254780310|r 4 IIQTVKSIIIELFH-----CIYPSICPIYSRII 31 (119)
Q Consensus 4 ~~~~ik~~~~~ll~-----~lfP~~C~~C~~~~ 31 (119)
|+..++.+-+.+-. ++.|+.|--||-..
T Consensus 45 Vy~hLeHIaksl~r~g~~L~v~Pp~C~~CGf~F 77 (105)
T 2gmg_A 45 ILEDLKVISKIAKREGMVLLIKPAQCRKCGFVF 77 (105)
T ss_dssp HHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHCCCCCEE
T ss_conf 999999999988608976998683122077772
No 52
>>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-42)
Probab=22.69 E-value=26 Score=16.22 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 787471037515657
Q gi|254780310|r 20 YPSICPIYSRIINLR 34 (119)
Q Consensus 20 fP~~C~~C~~~~~~~ 34 (119)
|-+.|..|++++..+
T Consensus 4 ~~~~C~~C~~~I~g~ 18 (42)
T 2d8z_A 4 GSSGCVQCKKPITTG 18 (42)
T ss_dssp CCCBCSSSCCBCCSS
T ss_pred CCCCCCCCCCEECCC
T ss_conf 885241479991798
No 53
>>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} (A:)
Probab=22.28 E-value=32 Score=15.76 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 747103751565-------77028889950867678620124446533
Q gi|254780310|r 22 SICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 22 ~~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
..|++|...... ++.+|..|..+.-. ....||.|..+...
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH-HCCCCCCCCCCHHH
T ss_conf 999439839768908818899076899999998-39908886826362
No 54
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244)
Probab=22.16 E-value=28 Score=16.09 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=12.1
Q ss_pred CCCCCCCCC------CCCCEECHHHHHHCC
Q ss_conf 471037515------657702888995086
Q gi|254780310|r 23 ICPIYSRII------NLRFCLCGHCWSKIH 46 (119)
Q Consensus 23 ~C~~C~~~~------~~~~~lC~~C~~~l~ 46 (119)
+|..||+.. ..++.+|..|....+
T Consensus 70 ~C~~cg~~~~~~fs~~~gg~vc~~c~~~~~ 99 (162)
T 1u5k_A 70 RCARCGAPDPEHPDPLGGQLLCSKCAALPP 99 (162)
T ss_dssp BCTTTCCBSCCEECTTTSSEECTTTCSSCC
T ss_pred HHHHCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 675047888760032139045467655688
No 55
>>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:81-112)
Probab=22.09 E-value=21 Score=16.70 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCC-------CEECHHHHHHC
Q ss_conf 471037515657-------70288899508
Q gi|254780310|r 23 ICPIYSRIINLR-------FCLCGHCWSKI 45 (119)
Q Consensus 23 ~C~~C~~~~~~~-------~~lC~~C~~~l 45 (119)
.|..||..++.+ ..+|.+|.+++
T Consensus 3 ~C~~Cg~~I~~~RL~a~P~a~~Ci~Cq~~~ 32 (32)
T 2kq9_A 3 TCVKCGKRISEDRLKAVPYTPFCQECAAAL 32 (32)
T ss_dssp EETTTTEECCHHHHHHCSCCSSCHHHHHHC
T ss_pred CCHHCCCCCCHHHHHCCCCCCHHHHHHHCC
T ss_conf 402319906899970799846279998449
No 56
>>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus} (A:)
Probab=21.97 E-value=26 Score=16.19 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCCCEECHHHH
Q ss_conf 78747103751565770288899
Q gi|254780310|r 20 YPSICPIYSRIINLRFCLCGHCW 42 (119)
Q Consensus 20 fP~~C~~C~~~~~~~~~lC~~C~ 42 (119)
.|..|-.|++.+-.++.-|.+|-
T Consensus 21 ~~t~C~~C~~~l~~qg~~C~~C~ 43 (59)
T 1rfh_A 21 GPGWCDLCGREVLRQALRCANCK 43 (59)
T ss_dssp CCEECTTTCSEECSCCEECTTTS
T ss_pred CCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 99797003835787576669899
No 57
>>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} (A:)
Probab=20.56 E-value=15 Score=17.60 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCEECHHHHHH
Q ss_conf 874710375156577028889950
Q gi|254780310|r 21 PSICPIYSRIINLRFCLCGHCWSK 44 (119)
Q Consensus 21 P~~C~~C~~~~~~~~~lC~~C~~~ 44 (119)
=.+|.-||+.......+|+.|.+.
T Consensus 47 ~~rC~~CG~~~~Ppr~~C~~Cg~~ 70 (145)
T 2gnr_A 47 GSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp EEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEECCCCCEEECCCCCCCCCCCC
T ss_conf 999189997886753568999997
Done!