Query gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 116 out of 730
Neff 7.9
Searched_HMMs 13730
Date Wed Jun 1 02:26:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780310.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 74.0 1.1 8.2E-05 21.6 2.9 62 23-102 10-77 (78)
2 d2c2la2 g.44.1.2 (A:225-304) S 65.7 2.4 0.00018 19.8 3.1 59 23-99 9-73 (80)
3 d1jm7a_ g.44.1.1 (A:) brca1 RI 61.3 4.9 0.00036 18.1 4.4 55 5-62 8-70 (103)
4 d1jm7b_ g.44.1.1 (B:) bard1 RI 56.9 5.9 0.00043 17.6 4.0 52 5-62 9-67 (97)
5 d1ur6b_ g.44.1.1 (B:) Not-4 N- 49.8 4 0.00029 18.6 2.0 29 34-62 23-51 (52)
6 d1dgsa1 a.60.2.2 (A:401-581) N 49.6 2.4 0.00017 19.8 0.8 25 86-110 85-109 (181)
7 d2jnea1 g.41.18.1 (A:1-71) Hyp 37.6 1.3 9.5E-05 21.3 -2.0 39 22-62 3-43 (71)
8 d1weoa_ g.44.1.1 (A:) Cellulos 34.9 10 0.00073 16.4 2.1 42 21-62 16-70 (93)
9 d2fiya1 e.59.1.1 (A:19-308) Fd 33.3 10 0.00073 16.4 1.9 56 4-60 138-214 (290)
10 d1rmda2 g.44.1.1 (A:1-86) V(D) 29.4 8.5 0.00062 16.8 1.0 41 22-62 24-70 (86)
11 d1wgma_ g.44.1.2 (A:) Ubiquiti 29.1 17 0.0012 15.1 4.7 61 23-102 24-91 (98)
12 d2dj7a2 g.39.1.3 (A:8-43) Acti 26.9 13 0.00092 15.8 1.5 17 19-35 6-22 (36)
13 d2dkta1 g.89.1.1 (A:8-81) RING 26.4 9.9 0.00072 16.4 0.9 42 24-70 23-71 (74)
14 d1g25a_ g.44.1.1 (A:) TFIIH Ma 25.8 17 0.0012 15.1 2.0 41 22-62 4-55 (65)
15 d2cona1 g.41.15.1 (A:8-73) RNA 23.2 5.3 0.00038 17.9 -1.0 23 37-59 10-32 (66)
16 d2baya1 g.44.1.2 (A:1-56) Pre- 22.4 12 0.00086 16.0 0.7 41 23-64 2-49 (56)
17 d1fbva4 g.44.1.1 (A:356-434) C 20.7 22 0.0016 14.5 1.7 41 22-62 24-70 (79)
No 1
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=74.04 E-value=1.1 Score=21.61 Aligned_cols=62 Identities=10% Similarity=-0.121 Sum_probs=38.6
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119)
.|++|..... -++..|.+|..+.-......|+.|+.+...... .-+-.++++|.+|
T Consensus 10 ~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l------------------~pN~~L~~~I~~~ 71 (78)
T d1t1ha_ 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL------------------TPNYVLKSLIALW 71 (78)
T ss_dssp SCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC------------------EECTTTHHHHHHH
T ss_pred CCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC------------------CCHHHHHHHHHHH
T ss_conf 9917181210833726777433999999999888878865563775656------------------2469999999999
Q ss_pred HHCCCH
Q ss_conf 447876
Q gi|254780310|r 97 KYHDRT 102 (119)
Q Consensus 97 Ky~~~~ 102 (119)
+-.+..
T Consensus 72 ~~~~~~ 77 (78)
T d1t1ha_ 72 CESNGI 77 (78)
T ss_dssp HHHSCC
T ss_pred HHHHCC
T ss_conf 999586
No 2
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.66 E-value=2.4 Score=19.78 Aligned_cols=59 Identities=2% Similarity=-0.186 Sum_probs=36.3
Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997
Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119)
Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119)
.|++|..+.. -++..|.+|..+.-......|+.|+.+..... ...+-.++++|.+|
T Consensus 9 ~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~------------------l~pN~~L~~~I~~~ 70 (80)
T d2c2la2 9 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ------------------LIPNLAMKEVIDAF 70 (80)
T ss_dssp BCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG------------------CEECHHHHHHHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCC------------------CCCHHHHHHHHHHH
T ss_conf 185837323403305886856388999998637765787566654235------------------55199999999999
Q ss_pred HHC
Q ss_conf 447
Q gi|254780310|r 97 KYH 99 (119)
Q Consensus 97 Ky~ 99 (119)
+-.
T Consensus 71 l~~ 73 (80)
T d2c2la2 71 ISE 73 (80)
T ss_dssp HTT
T ss_pred HHH
T ss_conf 998
No 3
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.29 E-value=4.9 Score=18.06 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCEECHHHHHHCCCC--CCCCCCCCCCCCCC
Q ss_conf 99999999999998578747103751565------770288899508676--78620124446533
Q gi|254780310|r 5 IQTVKSIIIELFHCIYPSICPIYSRIINL------RFCLCGHCWSKIHFI--TATEHILKNNKDNI 62 (119)
Q Consensus 5 ~~~ik~~~~~ll~~lfP~~C~~C~~~~~~------~~~lC~~C~~~l~~i--~~~~C~~Cg~~~~~ 62 (119)
++.++++++.+-+.| .|++|...... ++.+|..|..+.-.. ....||.|..+...
T Consensus 8 ~~~~~~~~~~l~~~l---~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (103)
T d1jm7a_ 8 VEEVQNVINAMQKIL---ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (103)
T ss_dssp HHHHHHHHHHHHHHT---SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HHHHHHHHHHCCCCC---CCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 999999999663584---997218231891883799864167899999977999809698883875
No 4
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.94 E-value=5.9 Score=17.63 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC------C-CCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999857874710375156------5-77028889950867678620124446533
Q gi|254780310|r 5 IQTVKSIIIELFHCIYPSICPIYSRIIN------L-RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 5 ~~~ik~~~~~ll~~lfP~~C~~C~~~~~------~-~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
....+..++.+-+.| .|++|..... . ++.+|.+|..+.- ...||.|..+...
T Consensus 9 ~~~~~~~l~~l~~~l---~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~---~~~CP~Cr~~~~~ 67 (97)
T d1jm7b_ 9 WAHSRAALDRLEKLL---RCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWI 67 (97)
T ss_dssp CHHHHHHHHHHHHTT---SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT---TTBCSSSCCBCSC
T ss_pred CHHHHHHHHHHHHCC---CCCCCCCHHHCCCEECCCCCCHHHHHHHHHH---HCCCCCCCCCCCH
T ss_conf 076799999621228---9925872211274658899930299999998---5366622786765
No 5
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.76 E-value=4 Score=18.56 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77028889950867678620124446533
Q gi|254780310|r 34 RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 34 ~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
++.+|.+|..++-......||.|..++..
T Consensus 23 gH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 23 GYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp SCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 77045589999996648989865794889
No 6
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=49.59 E-value=2.4 Score=19.84 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1279999999744787669999999
Q gi|254780310|r 86 CDMSCVLVRLLKYHDRTDLAIMMAQ 110 (119)
Q Consensus 86 ~~~~r~lI~~~Ky~~~~~la~~la~ 110 (119)
+..+..++.++.-..+..+.+++..
T Consensus 85 ~ksa~nl~~~Ie~sk~~~l~r~l~a 109 (181)
T d1dgsa1 85 EKSAQNLLRQIEESKHRGLERLLYA 109 (181)
T ss_dssp STTHHHHHHHHHHGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 0789999999874111138999999
No 7
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=37.58 E-value=1.3 Score=21.28 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCC--CCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 747103751565--77028889950867678620124446533
Q gi|254780310|r 22 SICPIYSRIINL--RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 22 ~~C~~C~~~~~~--~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
..|+.|+..++. +..-|..|...+. ...+||-|+.++.-
T Consensus 3 ~~CP~C~~eL~~~~~~~~C~~C~~~~~--~~a~CPdC~~~Le~ 43 (71)
T d2jnea1 3 LHCPQCQHVLDQDNGHARCRSCGEFIE--MKALCPDCHQPLQV 43 (71)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEE--EEEECTTTCSBCEE
T ss_pred CCCCCCCCCCCCCCCCEEHHHHHHHHE--EEEECCCCCCHHHH
T ss_conf 868875573102589776146401023--67758860208999
No 8
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.93 E-value=10 Score=16.36 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCC---CC----------CEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 874710375156---57----------7028889950867678620124446533
Q gi|254780310|r 21 PSICPIYSRIIN---LR----------FCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 21 P~~C~~C~~~~~---~~----------~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
...|-+||..+. +. .++|..|..-=..--...|++|+.+..-
T Consensus 16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 5220115463241789988887523698645078999985167027444872455
No 9
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.28 E-value=10 Score=16.37 Aligned_cols=56 Identities=11% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHCC---------CCCCCCCCC-----C-C--C-C---CEECHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 999999999999998578---------747103751-----5-6--5-7---70288899508676786201244465
Q gi|254780310|r 4 IIQTVKSIIIELFHCIYP---------SICPIYSRI-----I-N--L-R---FCLCGHCWSKIHFITATEHILKNNKD 60 (119)
Q Consensus 4 ~~~~ik~~~~~ll~~lfP---------~~C~~C~~~-----~-~--~-~---~~lC~~C~~~l~~i~~~~C~~Cg~~~ 60 (119)
|...+...+..+...+=+ ..|++||.. + . . + ...|.-|..+.++ ....|+.||...
T Consensus 138 i~aALq~~~a~~A~~l~~~~~~~~~~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~-~R~~C~~Cg~~~ 214 (290)
T d2fiya1 138 LGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEESK 214 (290)
T ss_dssp HHHHHHHHHHHHHHTCCTTCSCCCTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCCS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCCC
T ss_conf 99999999999996358645577666996999998021140323677788568878999885421-066687999999
No 10
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.38 E-value=8.5 Score=16.75 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156------577028889950867678620124446533
Q gi|254780310|r 22 SICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 22 ~~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
-.|++|..... =++.+|..|..+.-......|+.|..|...
T Consensus 24 l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~ 70 (86)
T d1rmda2 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (86)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCHHCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 59956784441555267887631999999996487907036997996
No 11
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.13 E-value=17 Score=15.08 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=38.7
Q ss_pred CCCCCCCCCC------CCC-EECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4710375156------577-028889950867678620124446533476089851678435301200021279999999
Q gi|254780310|r 23 ICPIYSRIIN------LRF-CLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRL 95 (119)
Q Consensus 23 ~C~~C~~~~~------~~~-~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~ 95 (119)
.|++|+.++. ..+ ..|.+|..+. +.....|+.|+.+...... .-+-.++++|.+
T Consensus 24 ~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~-l~~~~~~P~~~~~l~~~~L------------------~pN~~Lr~~I~~ 84 (98)
T d1wgma_ 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMDQI------------------RPNTELKEKIQR 84 (98)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHH-TTTSCBCTTTCSBCCTTTS------------------EECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCHHH------------------CCHHHHHHHHHH
T ss_conf 886734688777762355320149999999-8706876655566640112------------------013999999999
Q ss_pred HHHCCCH
Q ss_conf 7447876
Q gi|254780310|r 96 LKYHDRT 102 (119)
Q Consensus 96 ~Ky~~~~ 102 (119)
|+-.++.
T Consensus 85 ~~~~~~~ 91 (98)
T d1wgma_ 85 WLAERKQ 91 (98)
T ss_dssp HHHHSTT
T ss_pred HHHHHHH
T ss_conf 9999987
No 12
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.88 E-value=13 Score=15.80 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=10.9
Q ss_pred HCCCCCCCCCCCCCCCC
Q ss_conf 57874710375156577
Q gi|254780310|r 19 IYPSICPIYSRIINLRF 35 (119)
Q Consensus 19 lfP~~C~~C~~~~~~~~ 35 (119)
--|..|..|++.+.++.
T Consensus 6 ~g~~~CagCg~eik~gQ 22 (36)
T d2dj7a2 6 RGPSHCAGCKEEIKHGQ 22 (36)
T ss_dssp SSCSCCTTTCCCCSSSC
T ss_pred CCCCCCCCCCHHHHCCC
T ss_conf 48733342144564770
No 13
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.38 E-value=9.9 Score=16.40 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCEECHHHHHHCCCC-------CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7103751565770288899508676-------7862012444653347608985
Q gi|254780310|r 24 CPIYSRIINLRFCLCGHCWSKIHFI-------TATEHILKNNKDNIDKDPLKSM 70 (119)
Q Consensus 24 C~~C~~~~~~~~~lC~~C~~~l~~i-------~~~~C~~Cg~~~~~~~~C~~C~ 70 (119)
|.-||.. .-|+.|-..+.+. +.-.|..||........|..|-
T Consensus 23 C~~Cg~~-----~~C~~C~~~lt~H~~~~k~~~~l~CH~Cg~~~~~~~~C~~Cg 71 (74)
T d2dkta1 23 APCCDKL-----YTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 71 (74)
T ss_dssp ETTTTEE-----ESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred CCCCCCE-----EECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 3869396-----218988875120343524688798356797443788487878
No 14
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.79 E-value=17 Score=15.12 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=24.9
Q ss_pred CCCCCCCCCC-----------CCCCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 7471037515-----------6577028889950867678620124446533
Q gi|254780310|r 22 SICPIYSRII-----------NLRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 22 ~~C~~C~~~~-----------~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
..|++|.... .=++.+|.+|..+.--.....||.|..+...
T Consensus 4 ~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~ 55 (65)
T d1g25a_ 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9987088260039956798476372764889999857081979999868130
No 15
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.21 E-value=5.3 Score=17.90 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=14.5
Q ss_pred ECHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 28889950867678620124446
Q gi|254780310|r 37 LCGHCWSKIHFITATEHILKNNK 59 (119)
Q Consensus 37 lC~~C~~~l~~i~~~~C~~Cg~~ 59 (119)
-|..|+.-.+-.+..+|+.||..
T Consensus 10 rC~aCf~~t~~~~k~FCpkCGn~ 32 (66)
T d2cona1 10 RCHGCFKTTSDMNRVFCGHCGNK 32 (66)
T ss_dssp ECSSSCCEESCSSCCSCSSSCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCC
T ss_conf 74255769688666417536988
No 16
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.41 E-value=12 Score=15.95 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=26.8
Q ss_pred CCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710375156-------57702888995086767862012444653347
Q gi|254780310|r 23 ICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNIDK 64 (119)
Q Consensus 23 ~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~ 64 (119)
.|++|++... .++..|.+|..+.-. +...||.|+.+.+...
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~-~~~~CP~c~~~l~~~d 49 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEE 49 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-HHSBCTTTCCBCCGGG
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCCCCHHH
T ss_conf 99367856886574578998455999999876-0367985478188775
No 17
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.71 E-value=22 Score=14.52 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=26.3
Q ss_pred CCCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 74710375156------577028889950867678620124446533
Q gi|254780310|r 22 SICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119)
Q Consensus 22 ~~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119)
..|++|-.... =++.+|.+|....-.-....||.|..+...
T Consensus 24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~ 70 (79)
T d1fbva4 24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70 (79)
T ss_dssp TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred CCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99935897689969958999352999999999785818997958647
Done!