RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780310|ref|YP_003064723.1| hypothetical protein
CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>gnl|CDD|31242 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
           function prediction only].
          Length = 225

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 19  IYPSICPIYSRIINLRFCLCGHCWSKIHFITAT-EHILKNNKDNIDKDPLKSMQKDLPLT 77
           + P  C     ++     LC  C + +  I             +  +       K  P  
Sbjct: 9   LLPPRC-WLCLLLLFFPGLCSGCQADLPLIGNLCPLCGLPLSSHACRCGECL-AKPPPFE 66

Query: 78  QIRSVTLYCDMSCVLVRLLKYHDRTDLAIMMAQWMFRVL 116
           ++RS+  Y      L+  LK+    DLA ++A+ + + L
Sbjct: 67  RLRSLGSYNGPLRELISQLKFQGDLDLAKLLARLLAKAL 105


>gnl|CDD|39038 KOG3834, KOG3834, KOG3834, Golgi reassembly stacking protein
          GRASP65, contains PDZ domain [Intracellular
          trafficking, secretion, and vesicular transport].
          Length = 462

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 45 IHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTL 84
            FI +   I  N  ++  K  LK+  + + LT   S T 
Sbjct: 37 FDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSKTQ 76


>gnl|CDD|36677 KOG1464, KOG1464, KOG1464, COP9 signalosome, subunit CSN2
           [Posttranslational modification, protein turnover,
           chaperones, Signal transduction mechanisms].
          Length = 440

 Score = 25.8 bits (56), Expect = 2.8
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)

Query: 48  ITATEHILKNNKDNIDKDP-LKSMQKDLPLTQIRSVTLYCDMSCVLVRLLK 97
           I   E ILK+N+ NI  DP ++   +DL L  IR+         VL++L+K
Sbjct: 319 IIEFERILKSNRSNIMDDPFIREHIEDL-LRNIRTQ--------VLLKLIK 360


>gnl|CDD|176757 cd08779, Death_PIDD, Death Domain of p53-induced protein with a
           death domain.  Death domain (DD) found in PIDD
           (p53-induced protein with a death domain) and similar
           proteins. PIDD is a component of the PIDDosome complex,
           which is an oligomeric caspase-activating complex
           involved in caspase-2 activation and plays a role in
           mediating stress-induced apoptosis. The PIDDosome
           complex is composed of three components, PIDD, RAIDD and
           caspase-2, which interact through their DDs and DD-like
           domains. The DD of PIDD interacts with the DD of RAIDD,
           which also contains a Caspase Activation and Recruitment
           Domain (CARD) that interacts with the caspase-2 CARD.
           Autoproteolysis of PIDD determines the downstream
           signaling event, between pro-survival NF-kB or pro-death
           caspase-2 activation. In general, DDs are
           protein-protein interaction domains found in a variety
           of domain architectures. Their common feature is that
           they form homodimers by self-association or heterodimers
           by associating with other members of the DD superfamily
           including CARD, DED (Death Effector Domain), and PYRIN.
           They serve as adaptors in signaling pathways and can
           recruit other proteins into signaling complexes.
          Length = 86

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 52  EHILKNNKDNIDK---DPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDLA 105
           + I  NN+D++D+   D L S  +              D    LV  L+   R DLA
Sbjct: 31  QRIKYNNRDDLDEQIFDMLFSWAQRQAGDP--------DAVGKLVTALEESGRQDLA 79


>gnl|CDD|35437 KOG0216, KOG0216, KOG0216, RNA polymerase I, second largest subunit
           [Transcription].
          Length = 1111

 Score = 24.5 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 90  CVLVRLLKYHDRTDLAIMMAQWMF 113
            VLV L    D+ +L I M Q ++
Sbjct: 313 YVLVHLDSDEDKFNLLIFMIQKLY 336


>gnl|CDD|34971 COG5412, COG5412, Phage-related protein [Function unknown].
          Length = 637

 Score = 24.1 bits (52), Expect = 8.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 1   MPAIIQTVKSIIIELFHCIYPSICPIYSRIIN 32
           MP + Q   S++ +    I+ +I P+   + N
Sbjct: 257 MPIVTQAGISVVKDSLSGIWNAIKPLIGFLFN 288


>gnl|CDD|34842 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
          Length = 3164

 Score = 24.2 bits (52), Expect = 9.4
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 49   TATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDL 104
            T T   L   +   +  P   + +  P   ++ + L+CD    L    +Y+  T +
Sbjct: 1532 TMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD-EINLPYGFEYYPPTVI 1586


>gnl|CDD|36500 KOG1286, KOG1286, KOG1286, Amino acid transporters [Amino acid
           transport and metabolism].
          Length = 554

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 68  KSMQKDLPLTQIRSV----TLYCDMSCVLVRLLKYHD 100
           K+ +K +P    +S+      Y   S VL  L+ Y+D
Sbjct: 259 KNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYND 295


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.332    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,453,773
Number of extensions: 66662
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 119
Length of database: 6,263,737
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,513,408
Effective search space: 171509504
Effective search space used: 171509504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.5 bits)