RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A (A:) Length = 85 Score = 25.5 bits (56), Expect = 2.8 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 61 NIDKDPLKSMQKDLPLTQIRSVTLYCD---MSCVLVRLLKYHDRTDLAIM--MAQW 111 NI +K + +V +YC+ S +L T + + Sbjct: 23 NIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDI 78 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.332 0.142 0.462 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 931,419 Number of extensions: 36102 Number of successful extensions: 86 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 5 Length of query: 119 Length of database: 4,956,049 Length adjustment: 71 Effective length of query: 48 Effective length of database: 2,555,894 Effective search space: 122682912 Effective search space used: 122682912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.8 bits)