RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780310|ref|YP_003064723.1| hypothetical protein
CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
           {Physarum polycephalum [TaxId: 5791]}
          Length = 342

 Score = 27.9 bits (62), Expect = 0.24
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 46  HFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLY 85
            F +  + I      ++  +   SMQ+   L  +R    +
Sbjct: 264 QFHSIRDIITLYTGYDVGTEGSISMQEGF-LATVRECASF 302


>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
           (TTHA1462) {Thermus thermophilus [TaxId: 274]}
          Length = 208

 Score = 25.1 bits (54), Expect = 2.0
 Identities = 3/17 (17%), Positives = 10/17 (58%)

Query: 96  LKYHDRTDLAIMMAQWM 112
           +++ DR     ++A+ +
Sbjct: 1   MRFRDRRHAGALLAEAL 17


>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal
           domains {Human (Homo sapiens), mitochondrial [TaxId:
           9606]}
          Length = 204

 Score = 24.3 bits (52), Expect = 3.2
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 8/67 (11%)

Query: 45  IHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDL 104
             FI      L    D    DPLK  Q    +               +  LLKY     L
Sbjct: 144 GLFIVKNRKDLIKATD--SSDPLKPYQD-FIIDSREPDATT-----RVCELLKYQGEHCL 195

Query: 105 AIMMAQW 111
              M QW
Sbjct: 196 LKEMQQW 202


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 22.8 bits (48), Expect = 8.7
 Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 9/104 (8%)

Query: 1   MPAIIQTVKSIIIELFHCIYPSI-CPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNK 59
              +  T + + I        S    + +      + L G    +       +   +   
Sbjct: 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG 229

Query: 60  DNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTD 103
           +     PL+ +    P  +      Y        R L +    D
Sbjct: 230 EKKQSTPLRELCAGFP-EEFYKYMHYA-------RNLAFDATPD 265


>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
           (SAMT) {Clarkia breweri [TaxId: 36903]}
          Length = 359

 Score = 22.6 bits (48), Expect = 9.0
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 14  ELFHCIYPSICP--IYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNI 62
           ++    + +  P   Y R+         H    + +++     +++NK NI
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNI 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,730
Number of extensions: 19112
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.4 bits)