RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]} Length = 342 Score = 27.9 bits (62), Expect = 0.24 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 46 HFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLY 85 F + + I ++ + SMQ+ L +R + Sbjct: 264 QFHSIRDIITLYTGYDVGTEGSISMQEGF-LATVRECASF 302 >d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]} Length = 208 Score = 25.1 bits (54), Expect = 2.0 Identities = 3/17 (17%), Positives = 10/17 (58%) Query: 96 LKYHDRTDLAIMMAQWM 112 +++ DR ++A+ + Sbjct: 1 MRFRDRRHAGALLAEAL 17 >d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Score = 24.3 bits (52), Expect = 3.2 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 8/67 (11%) Query: 45 IHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDL 104 FI L D DPLK Q + + LLKY L Sbjct: 144 GLFIVKNRKDLIKATD--SSDPLKPYQD-FIIDSREPDATT-----RVCELLKYQGEHCL 195 Query: 105 AIMMAQW 111 M QW Sbjct: 196 LKEMQQW 202 >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 Score = 22.8 bits (48), Expect = 8.7 Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 9/104 (8%) Query: 1 MPAIIQTVKSIIIELFHCIYPSI-CPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNK 59 + T + + I S + + + L G + + + Sbjct: 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG 229 Query: 60 DNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTD 103 + PL+ + P + Y R L + D Sbjct: 230 EKKQSTPLRELCAGFP-EEFYKYMHYA-------RNLAFDATPD 265 >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359 Score = 22.6 bits (48), Expect = 9.0 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 14 ELFHCIYPSICP--IYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNI 62 ++ + + P Y R+ H + +++ +++NK NI Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNI 166 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.332 0.142 0.462 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 469,730 Number of extensions: 19112 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 12 Length of query: 119 Length of database: 2,407,596 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,391,576 Effective search space: 62620920 Effective search space used: 62620920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 47 (22.4 bits)