HHsearch alignment for GI: 254780311 and conserved domain: cd02966
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.71 E-value=1.4e-07 Score=60.93 Aligned_cols=111 Identities=28% Similarity=0.402 Sum_probs=79.1
Q ss_pred CCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHCCCC
Q ss_conf 84036888-402358983897499998228878741001010465311245531011023430354--011366522358
Q gi|254780311|r 21 DGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVND--AFVMNAWGKKLE 97 (177)
Q Consensus 21 d~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d--~~~~~aw~~~~~ 97 (177)
T Consensus 1 df~l~d~~G~~~~l~~~-~gk~~vl~f~-a~wC~~C~~-~~~~l~~~~~~~~~~~v-~vi~i~~~~~~~~~~~~~~~~~~ 76 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL-KGKVVLVNFW-ASWCPPCRA-EMPELEALAKEYKDDGV-EVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred CCCEECCCCCEEEHHHH-CCCEEEEEEE-CCCCCCCCC-CCCCEEEEECCCCCCCC-EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 92158799299859997-9995999999-278997545-36420233013445641-38999788788899999887439
Q ss_pred CCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEE
Q ss_conf 7527861036715433320022476543441001599998-7996999997
Q gi|254780311|r 98 IKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFV 147 (177)
Q Consensus 98 ~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~ 147 (177)
T Consensus 77 ~-~~p~~~D~~~~~~~~~~v~-----------~~P~~~iid~~G~i~~~~~ 115 (116)
T cd02966 77 I-TFPVLLDPDGELAKAYGVR-----------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred C-CEEEEECCCCHHHHHCCCC-----------CCCEEEEECCCCEEEEEEE
T ss_conf 8-3389986985289984998-----------0457999999999999997