Query gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 177 No_of_seqs 109 out of 1613 Neff 7.5 Searched_HMMs 39220 Date Sun May 29 16:10:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780311.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG0678 AHP1 Peroxiredoxin [Po 100.0 0 0 317.1 14.0 161 1-172 4-165 (165) 2 cd03013 PRX5_like Peroxiredoxi 100.0 0 0 304.5 12.7 150 15-170 1-155 (155) 3 KOG0541 consensus 100.0 0 0 275.7 11.0 155 12-172 8-171 (171) 4 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.2E-32 3.1E-37 195.8 12.4 152 11-176 2-156 (157) 5 cd03015 PRX_Typ2cys Peroxiredo 100.0 3.1E-31 7.9E-36 188.3 13.2 145 15-176 1-157 (173) 6 TIGR03137 AhpC peroxiredoxin. 100.0 6.2E-31 1.6E-35 186.7 12.5 148 11-176 1-156 (187) 7 PTZ00253 tryparedoxin peroxida 100.0 1.4E-30 3.7E-35 184.7 14.2 148 12-176 5-164 (199) 8 PRK13190 putative peroxiredoxi 100.0 7.5E-31 1.9E-35 186.2 12.0 148 12-176 1-154 (202) 9 PRK00522 tpx thiol peroxidase; 100.0 1.1E-30 2.7E-35 185.4 12.1 148 12-174 18-168 (168) 10 PTZ00137 2-Cys peroxiredoxin; 100.0 1.4E-30 3.6E-35 184.7 12.5 149 11-176 1-160 (194) 11 PRK09437 bcp thioredoxin-depen 100.0 1.4E-30 3.7E-35 184.7 11.9 149 12-176 3-156 (156) 12 cd03016 PRX_1cys Peroxiredoxin 100.0 3.5E-30 9E-35 182.6 13.6 148 15-176 1-154 (203) 13 PRK13189 peroxiredoxin; Provis 100.0 8.6E-30 2.2E-34 180.5 13.4 148 14-176 3-156 (215) 14 cd03014 PRX_Atyp2cys Peroxired 100.0 5.8E-30 1.5E-34 181.4 12.1 140 14-171 1-143 (143) 15 PRK10382 alkyl hydroperoxide r 100.0 2.5E-29 6.4E-34 178.0 13.5 145 15-176 4-156 (187) 16 PRK13599 putative peroxiredoxi 100.0 5.4E-29 1.4E-33 176.2 13.6 149 13-176 2-156 (215) 17 PRK13191 putative peroxiredoxi 100.0 1.7E-28 4.4E-33 173.5 13.9 147 15-176 10-162 (230) 18 COG0450 AhpC Peroxiredoxin [Po 100.0 3.7E-28 9.4E-33 171.7 12.1 149 11-176 1-161 (194) 19 cd03018 PRX_AhpE_like Peroxire 99.9 3.3E-27 8.3E-32 166.6 11.8 145 13-174 1-149 (149) 20 cd02971 PRX_family Peroxiredox 99.9 1.1E-26 2.7E-31 163.9 11.6 138 18-169 1-140 (140) 21 cd03017 PRX_BCP Peroxiredoxin 99.9 3.5E-24 8.9E-29 150.3 11.8 138 17-170 1-140 (140) 22 KOG0855 consensus 99.9 8E-23 2E-27 143.0 11.0 149 11-174 61-210 (211) 23 pfam08534 Redoxin Redoxin. Thi 99.9 1.1E-21 2.9E-26 136.8 11.9 139 15-169 1-142 (142) 24 KOG0852 consensus 99.8 4.6E-18 1.2E-22 117.4 11.2 149 11-176 2-161 (196) 25 COG2077 Tpx Peroxiredoxin [Pos 99.8 2.2E-18 5.6E-23 119.1 9.2 131 13-150 18-151 (158) 26 KOG0854 consensus 99.8 1.2E-17 3.1E-22 115.1 11.3 153 12-176 5-168 (224) 27 pfam00578 AhpC-TSA AhpC/TSA fa 99.7 4.1E-17 1E-21 112.2 9.8 122 15-145 1-124 (124) 28 cd02970 PRX_like2 Peroxiredoxi 99.6 2.5E-15 6.4E-20 102.6 11.2 128 18-148 1-148 (149) 29 PRK03147 thiol-disulfide oxido 99.6 3.5E-14 8.8E-19 96.5 10.6 143 6-174 29-174 (176) 30 cd02969 PRX_like1 Peroxiredoxi 99.4 4E-12 1E-16 85.3 9.3 116 16-146 1-126 (171) 31 cd03010 TlpA_like_DsbE TlpA-li 98.7 1.3E-07 3.4E-12 61.0 9.6 113 17-147 1-118 (127) 32 cd02966 TlpA_like_family TlpA- 98.7 1.4E-07 3.5E-12 60.9 9.3 111 21-147 1-115 (116) 33 cd03011 TlpA_like_ScsD_MtbDsbE 98.4 2.3E-06 5.9E-11 54.3 9.5 106 20-144 1-108 (123) 34 cd03012 TlpA_like_DipZ_like Tl 98.2 1.2E-05 3.1E-10 50.4 9.4 114 20-149 1-125 (126) 35 cd02968 SCO SCO (an acronym fo 98.2 2E-05 5.2E-10 49.2 9.3 126 18-146 1-140 (142) 36 cd02967 mauD Methylamine utili 98.1 1.6E-05 4.2E-10 49.7 7.1 109 20-145 1-111 (114) 37 TIGR00385 dsbE periplasmic pro 97.9 0.00013 3.3E-09 44.9 8.8 117 15-147 37-157 (175) 38 pfam02630 SCO1-SenC SCO1/SenC. 97.7 0.00026 6.7E-09 43.2 8.2 125 20-146 18-156 (159) 39 cd03009 TryX_like_TryX_NRX Try 97.6 0.00038 9.7E-09 42.4 8.0 111 21-145 1-115 (131) 40 cd02964 TryX_like_family Trypa 97.0 0.0047 1.2E-07 36.5 8.2 106 26-146 5-116 (132) 41 TIGR02661 MauD methylamine deh 97.0 0.004 1E-07 36.9 7.2 132 15-174 48-180 (189) 42 COG1999 Uncharacterized protei 96.9 0.015 3.8E-07 33.8 9.9 141 21-175 49-203 (207) 43 pfam05988 DUF899 Bacterial pro 95.4 0.2 5E-06 27.8 9.3 119 21-149 48-175 (211) 44 PTZ00256 glutathione peroxidas 94.0 0.46 1.2E-05 25.8 11.1 142 17-174 18-179 (183) 45 KOG2792 consensus 93.6 0.21 5.5E-06 27.6 5.6 145 21-176 121-279 (280) 46 pfam09695 YtfJ_HI0045 Bacteria 87.1 2.3 6E-05 22.0 7.9 145 6-174 6-173 (174) 47 KOG4498 consensus 84.8 3.1 7.9E-05 21.3 10.2 137 26-173 37-195 (197) 48 cd00340 GSH_Peroxidase Glutath 75.1 6.7 0.00017 19.5 6.3 123 20-147 3-140 (152) 49 pfam00837 T4_deiodinase Iodoth 49.1 22 0.00056 16.7 9.4 142 13-174 73-235 (237) 50 pfam08747 DUF1788 Domain of un 39.7 24 0.00062 16.5 2.4 43 8-53 62-104 (125) 51 TIGR01626 ytfJ_HI0045 conserve 39.3 32 0.00081 15.9 5.3 135 13-175 23-182 (184) 52 pfam07830 PP2C_C Protein serin 38.5 17 0.00044 17.3 1.5 35 42-79 2-36 (81) 53 pfam01123 Stap_Strp_toxin Stap 37.8 22 0.00056 16.8 1.9 33 23-55 38-70 (86) 54 pfam05176 ATP-synt_10 ATP10 pr 37.7 34 0.00086 15.7 3.8 113 29-146 114-236 (255) 55 PRK11316 bifunctional heptose 32.0 41 0.0011 15.3 2.6 18 156-173 253-271 (473) 56 cd04104 p47_IIGP_like p47 (47- 30.6 44 0.0011 15.1 2.9 48 39-92 51-98 (197) 57 PRK10606 btuE putative glutath 28.9 48 0.0012 14.9 9.0 84 17-105 3-95 (183) 58 pfam08468 MTS_N Methyltransfer 28.4 37 0.00095 15.5 1.8 23 31-53 5-27 (155) 59 KOG4044 consensus 27.3 30 0.00077 16.0 1.2 46 27-82 91-136 (201) 60 cd02172 RfaE_N RfaE is a prote 27.1 52 0.0013 14.7 3.0 43 38-88 2-44 (143) 61 TIGR01405 polC_Gram_pos DNA po 26.2 29 0.00075 16.1 1.0 40 3-42 758-802 (1264) 62 cd03008 TryX_like_RdCVF Trypar 26.2 54 0.0014 14.6 7.2 69 33-104 19-95 (146) 63 KOG2501 consensus 25.4 56 0.0014 14.6 4.7 73 24-100 17-94 (157) 64 TIGR02403 trehalose_treC alpha 21.1 53 0.0013 14.7 1.5 35 46-80 10-46 (555) 65 TIGR00314 cdhA CO dehydrogenas 20.7 70 0.0018 14.0 2.1 53 32-91 531-592 (795) No 1 >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Probab=100.00 E-value=0 Score=317.06 Aligned_cols=161 Identities=50% Similarity=0.985 Sum_probs=152.5 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEE Q ss_conf 97671881599995367068840368884023589838974999982288787410010104653112455310110234 Q gi|254780311|r 1 MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYC 80 (177) Q Consensus 1 ~~~~~ip~~~~~ikvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~ 80 (177) |.|+|+|.++|+.+++|.-| ....++++.++|+|||||||++||||||+||..|+|+|.++.++|+++|+|.|+| T Consensus 4 ~vg~klP~vtf~tr~~~~~~-----~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~c 78 (165) T COG0678 4 MVGKKLPAVTFKTRVGDETA-----DGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYC 78 (165) T ss_pred CCCCCCCCEEEEEEECCCCC-----CCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 45880773076776414467-----7762122888528987999948876588766022846788799999749966999 Q ss_pred EECCCCHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCC Q ss_conf 3035401136652235875-278610367154333200224765434410015999987996999997488777877777 Q gi|254780311|r 81 LSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDP 159 (177) Q Consensus 81 ~s~~d~~~~~aw~~~~~~~-~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~ 159 (177) +|+||+|+|+||+++.+.. ++.+++|++++|++++|++.+.++.|+|.|||||+|+|+||+|+++++|+ +.+| T Consensus 79 VSVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~------p~~~ 152 (165) T COG0678 79 VSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEP------PGDP 152 (165) T ss_pred EEECCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCCCEEECCCCCCCEEEEEEEEEEECCEEEEEEECC------CCCC T ss_conf 9958299887888753888667994179814545337356315677543120477888578689998638------9995 Q ss_pred CCCCCHHHHHHHH Q ss_conf 3248999999999 Q gi|254780311|r 160 YEISSPENVLKVI 172 (177) Q Consensus 160 ~~vs~ae~iL~~L 172 (177) +++|+|++||++| T Consensus 153 ~~vS~a~~mL~~L 165 (165) T COG0678 153 FTVSSADTMLAQL 165 (165) T ss_pred EEECCHHHHHHCC T ss_conf 1004899997509 No 2 >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases Probab=100.00 E-value=0 Score=304.48 Aligned_cols=150 Identities=47% Similarity=0.792 Sum_probs=139.8 Q ss_pred ECCCCCCCCCC----CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 36706884036----88840235898389749999822887874100101046531124553101102343035401136 Q gi|254780311|r 15 VATVLPDGSKA----FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMN 90 (177) Q Consensus 15 vGd~~Pd~tl~----~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~ 90 (177) |||++|++++. +..++++++++|++|||||||+||||||+||.+|+|+|+++++.++++|+|+|+|+|+||||+|+ T Consensus 1 vGd~iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp~Cs~~HlP~~i~~~~~~~~kGvd~I~~isvnD~fv~~ 80 (155) T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155) T ss_pred CCCCCCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH T ss_conf 98878871899762999768878998499819999824667886534658547776999997699689999809999999 Q ss_pred HHHCCCCCC-EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 652235875-2786103671543332002247654344100159999879969999974887778777773248999999 Q gi|254780311|r 91 AWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVL 169 (177) Q Consensus 91 aw~~~~~~~-~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL 169 (177) ||+++++.. ++++|+|++++|++++|+..+....|||.||+||+|||+||+|+++++|+++ +.+++|+||+|| T Consensus 81 AW~~~~~~~~~i~~lsD~~~~f~~~lGl~~d~~~~g~g~Rs~R~a~iv~dg~I~~~~vE~~~------~~~~vS~ae~iL 154 (155) T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDP------GDVEVSSAENVL 154 (155) T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHCCEECCCCCCCCCCCEEEEEEEECCEEEEEEEECCC------CCCEEECHHHHH T ss_conf 99996098773599546747999972980625678780021008999999989999982799------976556878951 Q ss_pred H Q ss_conf 9 Q gi|254780311|r 170 K 170 (177) Q Consensus 170 ~ 170 (177) + T Consensus 155 k 155 (155) T cd03013 155 K 155 (155) T ss_pred C T ss_conf 9 No 3 >KOG0541 consensus Probab=100.00 E-value=0 Score=275.66 Aligned_cols=155 Identities=42% Similarity=0.764 Sum_probs=143.0 Q ss_pred EEEECCCCCCCCC------CCCCC--CEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9953670688403------68884--023589838974999982288787410010104653112455310110234303 Q gi|254780311|r 12 HMRVATVLPDGSK------AFQWK--DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSV 83 (177) Q Consensus 12 ~ikvGd~~Pd~tl------~~~~~--~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~ 83 (177) ++.|||.+|+.+. +.+++ +++++++|+|||+|||++||||||+|+.+|+|+|+++.++++.+|+|+|+|+|+ T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~sHvPGyi~~a~elksKGvd~IicvSV 87 (171) T KOG0541 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171) T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCEEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 30246746666310011683101342477678407864999848876488541012836887788887568867999963 Q ss_pred CCCHHHHHHHCCCCC-CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 540113665223587-5278610367154333200224765434410015999987996999997488777877777324 Q gi|254780311|r 84 NDAFVMNAWGKKLEI-KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEI 162 (177) Q Consensus 84 ~d~~~~~aw~~~~~~-~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~v 162 (177) ||||++++|.+.++. ..+.+++|++|+|++++|+.++....++|.||+||+++++||+|++.++|+++.+ +++ T Consensus 88 nDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~------~t~ 161 (171) T KOG0541 88 NDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTD------FTV 161 (171) T ss_pred CCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCC------EEE T ss_conf 86899888875257665589986588753100461454022567401240789983886999994368861------577 Q ss_pred CCHHHHHHHH Q ss_conf 8999999999 Q gi|254780311|r 163 SSPENVLKVI 172 (177) Q Consensus 163 s~ae~iL~~L 172 (177) |+||+||+.| T Consensus 162 ssae~il~~l 171 (171) T KOG0541 162 SSAEDILKQL 171 (171) T ss_pred ECHHHHHHCC T ss_conf 5178784329 No 4 >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Probab=100.00 E-value=1.2e-32 Score=195.84 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=123.0 Q ss_pred EEEEECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHH Q ss_conf 999536706884036888-4023589838974999982288787410010104653112455310110234303540113 Q gi|254780311|r 11 FHMRVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVM 89 (177) Q Consensus 11 ~~ikvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~ 89 (177) |++++||.+|||+|++++ ..++++|+ +||+|||||||+||||+||.|.|.+++++ .+|.+.+. +|+.+|.+++..+ T Consensus 2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~-~ef~~~~a-~V~GIS~Ds~~~~ 78 (157) T COG1225 2 MMLKVGDKAPDFELPDQDGETVSLSDL-RGKPVVLYFYPKDFTPGCTTEACDFRDLL-EEFEKLGA-VVLGISPDSPKSH 78 (157) T ss_pred CCCCCCCCCCCEEEECCCCCEEEHHHH-CCCCEEEEECCCCCCCCCHHHHHHHHHHH-HHHHHCCC-EEEEEECCCHHHH T ss_conf 857799918875835699999854883-69828999878899985169999999989-99986797-8999808998999 Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCC-CCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHH Q ss_conf 665223587527861036715433320022476543-4410015999987-99699999748877787777732489999 Q gi|254780311|r 90 NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVG-FGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPEN 167 (177) Q Consensus 90 ~aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g-~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~ 167 (177) ++|.++.+.. +.+|||++++++++||+.......| ....+.|.+|||+ +|+|.++|....+ ..++++ T Consensus 79 ~~F~~k~~L~-f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~----------~~h~~~ 147 (157) T COG1225 79 KKFAEKHGLT-FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV----------KGHADE 147 (157) T ss_pred HHHHHHHCCC-CEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC----------CCCHHH T ss_conf 9999982998-55667973789998486631345764233223348998999869999658997----------661999 Q ss_pred HHHHHHHHC Q ss_conf 999998616 Q gi|254780311|r 168 VLKVIRESK 176 (177) Q Consensus 168 iL~~Lk~~~ 176 (177) +|+.|++.+ T Consensus 148 vl~~l~~l~ 156 (157) T COG1225 148 VLAALKKLA 156 (157) T ss_pred HHHHHHHHC T ss_conf 999999752 No 5 >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric Probab=99.97 E-value=3.1e-31 Score=188.28 Aligned_cols=145 Identities=25% Similarity=0.352 Sum_probs=118.7 Q ss_pred ECCCCCCCCCC----CC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHH Q ss_conf 36706884036----88-84023589838974999982288787410010104653112455310110234303540113 Q gi|254780311|r 15 VATVLPDGSKA----FQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVM 89 (177) Q Consensus 15 vGd~~Pd~tl~----~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~ 89 (177) |||.||||+++ ++ ..+++++|+ +||||||+|||+||||+|+.|. +.+.+.+++|++.++ +|+++|+|+++.+ T Consensus 1 vGd~aP~F~l~~~~~~~~~~~v~lsd~-~Gk~vvL~FyP~dfTp~Ct~E~-~~f~~~~~ef~~~g~-~vigIS~Ds~~sh 77 (173) T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEI-IAFSDRYEEFKKLNA-EVLGVSTDSHFSH 77 (173) T ss_pred CCCCCCCCEEECCCCCCCCCEEEHHHH-CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCC-EEEEECCCCHHHH T ss_conf 958689876024228987408768996-8982999998178995227999-999999999984696-7998607988999 Q ss_pred HHHHCCC------CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 6652235------875278610367154333200224765434410015999987-996999997488777877777324 Q gi|254780311|r 90 NAWGKKL------EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEI 162 (177) Q Consensus 90 ~aw~~~~------~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~v 162 (177) ++|.+.. +...+++|||++++++++||+..+. .|+ +.|.++||+ ||+|+++++...... T Consensus 78 ~~~~~~~~~~~~~~~l~fplLsD~~~~v~~~yGv~~~~--~g~---~~R~tfiID~~g~Ir~~~~~~~~~g--------- 143 (173) T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEE--EGV---ALRGTFIIDPEGIIRHITVNDLPVG--------- 143 (173) T ss_pred HHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHCCCCCC--CCC---CCEEEEEECCCCEEEEEEECCCCCC--------- T ss_conf 99987689756877644676777636999981997565--687---7517999899986999997389989--------- Q ss_pred CCHHHHHHHHHHHC Q ss_conf 89999999998616 Q gi|254780311|r 163 SSPENVLKVIRESK 176 (177) Q Consensus 163 s~ae~iL~~Lk~~~ 176 (177) .++++||+.|++.| T Consensus 144 r~~~EiLr~l~aLq 157 (173) T cd03015 144 RSVDETLRVLDALQ 157 (173) T ss_pred CCHHHHHHHHHHHH T ss_conf 89999999999862 No 6 >TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. Probab=99.97 E-value=6.2e-31 Score=186.67 Aligned_cols=148 Identities=23% Similarity=0.416 Sum_probs=120.8 Q ss_pred EEEEECCCCCCCCCCC----CCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 9995367068840368----884023589838974999982288787410010104653112455310110234303540 Q gi|254780311|r 11 FHMRVATVLPDGSKAF----QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 (177) Q Consensus 11 ~~ikvGd~~Pd~tl~~----~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~ 86 (177) |.+ ||+++|||++.. +.++++++|+ +|||+||||||+||||+|++|. ..+.+.+++|++.++ +++++|+|+. T Consensus 1 M~l-vG~~aPdF~~~a~~~g~~~~isl~d~-~Gkw~VLffyP~DFTpVCttEl-~~~~~~~~eF~~~n~-~vlgiS~Ds~ 76 (187) T TIGR03137 1 MSL-INTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTEL-EDLADKYAELKKLGV-EVYSVSTDTH 76 (187) T ss_pred CCC-CCCCCCCCEEEEEECCEEEEEEHHHH-CCCEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHCCC-EEEEEECCCH T ss_conf 985-68889998887787892689758996-9975999995068888770899-999999999997799-7999855988 Q ss_pred HHHHHHHCCC---CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 1136652235---875278610367154333200224765434410015999987-996999997488777877777324 Q gi|254780311|r 87 FVMNAWGKKL---EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEI 162 (177) Q Consensus 87 ~~~~aw~~~~---~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~v 162 (177) +.+.+|.+.. +...++++||++++.+++||++.+. .|. +.|.++||| +|+|+++.+-.-..++ T Consensus 77 ~sH~aW~~~~~~~g~i~fPllaD~~~~vs~~yGvl~~~--~g~---a~Ra~FIIDp~g~Ir~~~~~~~~vGR-------- 143 (187) T TIGR03137 77 FVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEE--AGL---ADRGTFVIDPEGVIQAVEITDNGIGR-------- 143 (187) T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCHHHHHCCCCCCC--CCC---CEEEEEEECCCCEEEEEEECCCCCCC-------- T ss_conf 99999974276427723304428862589982975378--886---14689999999909999978998785-------- Q ss_pred CCHHHHHHHHHHHC Q ss_conf 89999999998616 Q gi|254780311|r 163 SSPENVLKVIRESK 176 (177) Q Consensus 163 s~ae~iL~~Lk~~~ 176 (177) +.+++|..|++.| T Consensus 144 -n~~EiLR~l~AlQ 156 (187) T TIGR03137 144 -DASELLRKIKAAQ 156 (187) T ss_pred -CHHHHHHHHHHHH T ss_conf -9999999999877 No 7 >PTZ00253 tryparedoxin peroxidase; Provisional Probab=99.97 E-value=1.4e-30 Score=184.71 Aligned_cols=148 Identities=19% Similarity=0.294 Sum_probs=121.1 Q ss_pred EEEECCCCCCCCC----CC-CCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 9953670688403----68-884023589838974999982288787410010104653112455310110234303540 Q gi|254780311|r 12 HMRVATVLPDGSK----AF-QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 (177) Q Consensus 12 ~ikvGd~~Pd~tl----~~-~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~ 86 (177) ..|||++||||++ ++ ..++++++|+ +||||||||||++|||+|++|.+ .+.+.+++|++.+. +++.+|+|+. T Consensus 5 ~arIG~~APdF~~~a~~~~~~~~~vsLsdy-~GkwvvL~fyP~dfT~vCttEl~-~~~~~~~eF~~~~~-~vigiS~Ds~ 81 (199) T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEII-QFSDSVKRFNELNC-EVLACSMDSE 81 (199) T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEHHHH-CCCEEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHCCC-EEEEEECCCH T ss_conf 665599399984055717995568851896-99859999810667886727999-99999999977797-8999978838 Q ss_pred HHHHHHHCCC------CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCC Q ss_conf 1136652235------875278610367154333200224765434410015999987-996999997488777877777 Q gi|254780311|r 87 FVMNAWGKKL------EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDP 159 (177) Q Consensus 87 ~~~~aw~~~~------~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~ 159 (177) +.+.+|.... +...+++++|.+++.+++||++.+. .|. +.|.+|||+ +|+|+++.+-....++ T Consensus 82 ~sH~aW~~~~~~~~g~~~i~fPliaD~~~~is~~yGvl~e~--~G~---a~Ra~FIIDp~giIr~~~v~~~~vGR----- 151 (199) T PTZ00253 82 YAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE--QGV---AYRGLFIIDPKGMLRQITVNDMPVGR----- 151 (199) T ss_pred HHHHHHHCCHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCC--CCC---EEEEEEEECCCCEEEEEEECCCCCCC----- T ss_conf 78998840707558857601215757865688971960266--895---26789998899849999977987685----- Q ss_pred CCCCCHHHHHHHHHHHC Q ss_conf 32489999999998616 Q gi|254780311|r 160 YEISSPENVLKVIRESK 176 (177) Q Consensus 160 ~~vs~ae~iL~~Lk~~~ 176 (177) +.+++|..|++.| T Consensus 152 ----nv~EiLR~l~AlQ 164 (199) T PTZ00253 152 ----NVEEVLRLLEAFQ 164 (199) T ss_pred ----CHHHHHHHHHHHH T ss_conf ----9999999999876 No 8 >PRK13190 putative peroxiredoxin; Provisional Probab=99.97 E-value=7.5e-31 Score=186.21 Aligned_cols=148 Identities=20% Similarity=0.366 Sum_probs=122.9 Q ss_pred EEEECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 99536706884036888402358983897499998228878741001010465311245531011023430354011366 Q gi|254780311|r 12 HMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 12 ~ikvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) .|+|||.+|||++....++++++|+ +|||+||||||+||||+||+|. ..+.+.+++|++.++ +++++|+|+.+.+.+ T Consensus 1 pL~iG~~aPdF~~~t~~g~i~l~dy-~Gkw~vlffyP~DfTpvCttEl-~~f~~~~~eF~~~~~-~vigiS~Ds~~sH~a 77 (202) T PRK13190 1 PVKLGQKAPDFTVNTTKGPIDLSKY-KGKWVLLFSHPADFTPVCTTEF-IAFSRRYEDFKKLGV-ELVGLSVDSIYSHIA 77 (202) T ss_pred CCCCCCCCCCCEECCCCCCEEEHHH-CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCC-EEEEEECCCHHHHHH T ss_conf 9978888988686168883972885-9987999995378898671799-999998999997698-899996753999999 Q ss_pred HHCC----CCC-CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCH Q ss_conf 5223----587-5278610367154333200224765434410015999987-996999997488777877777324899 Q gi|254780311|r 92 WGKK----LEI-KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSP 165 (177) Q Consensus 92 w~~~----~~~-~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~a 165 (177) |.+. .+. ..+++++|++++.+++||++.+. .|. +.|.+|||+ +|+|+++.+-.-..+. +. T Consensus 78 W~~~~~~~~G~~v~fPliaD~~~~is~~yG~l~~~--~g~---a~R~~FIIDp~g~Ir~~~~~~~~vGR---------n~ 143 (202) T PRK13190 78 WLRDIEERFGIKIPFPVIADIDKELAREYNLIDEN--SGA---TVRGVFIIDPNQIVRWMIYYPAETGR---------NI 143 (202) T ss_pred HHHCHHHHCCCCCCCCCCCCCCCHHHHHCCCEECC--CCC---EEEEEEEECCCCEEEEEEECCCCCCC---------CH T ss_conf 85687985693312234338950578974980078--896---57799999999849999975889602---------78 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998616 Q gi|254780311|r 166 ENVLKVIRESK 176 (177) Q Consensus 166 e~iL~~Lk~~~ 176 (177) +++|..|++.| T Consensus 144 ~EiLR~ldAlq 154 (202) T PRK13190 144 DEIIRITKALQ 154 (202) T ss_pred HHHHHHHHHHH T ss_conf 99999999887 No 9 >PRK00522 tpx thiol peroxidase; Provisional Probab=99.97 E-value=1.1e-30 Score=185.38 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=118.9 Q ss_pred EEEECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 99536706884036888-40235898389749999822887874100101046531124553101102343035401136 Q gi|254780311|r 12 HMRVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMN 90 (177) Q Consensus 12 ~ikvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~ 90 (177) +++|||++|||+|.+++ ++++++|+ +||++||+|||.+|||+|+.|.+.+.. ....+ .+ ..++++|+|.|+.++ T Consensus 18 ~~~VGd~APdF~l~~~~~~~v~Lsd~-~Gk~vVL~f~P~~~TpvC~~e~~~f~~-~~~~~--~~-~~v~gIS~D~~~a~~ 92 (168) T PRK00522 18 LPQVGSKAPDFTLVAKDLSDVSLSQF-AGKRKVLNIFPSIDTGVCAASVRKFNQ-LAAEL--DN-TVVLCVSADLPFAQS 92 (168) T ss_pred CCCCCCCCCCCEEECCCCCEEEHHHH-CCCEEEEEEEECCCCCHHHHHHHHHHH-HHHHC--CC-CEEEEEECCCHHHHH T ss_conf 99888999881888899999865883-998599999736888652778988999-99863--59-749999689989999 Q ss_pred HHHCCCCCCEEEEEECC-CHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHH Q ss_conf 65223587527861036-7154333200224765434410015999987-996999997488777877777324899999 Q gi|254780311|r 91 AWGKKLEIKNVKLLPDG-SGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENV 168 (177) Q Consensus 91 aw~~~~~~~~~~~l~D~-~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~i 168 (177) +|+++++...+.+|+|. .+++.++||++... +...|. +.|.++||| +|+|+|.++-+...+ ..++|++ T Consensus 93 ~f~~~~~~~~~~~lsd~~~~~~~~~yGvl~~~-~~~~g~-~~Ra~FVID~~G~I~y~e~v~~~~~--------~pdyd~~ 162 (168) T PRK00522 93 RFCGAEGLENVITLSTFRDAEFGQDYGVAIAD-GPLKGL-LARAVVVLDEDDNVIYSELVDEITT--------EPDYDAA 162 (168) T ss_pred HHHHHCCCCCCEECCCCCCCHHHHHCCCEECC-CCCCCC-EEEEEEEECCCCEEEEEEECCCCCC--------CCCHHHH T ss_conf 99986499886670416776389970957514-622594-7518999999997999998788888--------9899999 Q ss_pred HHHHHH Q ss_conf 999986 Q gi|254780311|r 169 LKVIRE 174 (177) Q Consensus 169 L~~Lk~ 174 (177) |++||+ T Consensus 163 l~alka 168 (168) T PRK00522 163 LAALKA 168 (168) T ss_pred HHHHCC T ss_conf 998619 No 10 >PTZ00137 2-Cys peroxiredoxin; Provisional Probab=99.97 E-value=1.4e-30 Score=184.73 Aligned_cols=149 Identities=25% Similarity=0.326 Sum_probs=122.6 Q ss_pred EEEEECCCCCCCCCC----CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 999536706884036----8884023589838974999982288787410010104653112455310110234303540 Q gi|254780311|r 11 FHMRVATVLPDGSKA----FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 (177) Q Consensus 11 ~~ikvGd~~Pd~tl~----~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~ 86 (177) |+..||+++|||++. +..++++++|+.++|||||||||+||||+|++|.+ .+...+++|++.+. +++++|+|+. T Consensus 1 M~~liG~~aPdF~~~a~~~~~~~~i~lsdy~g~kwvvLffyP~dFT~VCttEl~-~~~~~~~eF~~~~~-~v~giS~Ds~ 78 (194) T PTZ00137 1 MSSLVGKEAPSFKAEAVFGDNFGEFNLSDYFGDSYVLLVFYPLDFTFVCPSELL-GFSKRLDEFEERNV-KVLGCSVDSK 78 (194) T ss_pred CCHHHCCCCCCCEEEEEECCCEEEEEHHHHCCCCEEEEEEECCCCCCCCCHHHH-HHHHHHHHHHHCCC-EEEEEECCCH T ss_conf 925649839998926662895008863997799679999803778875508999-99999999997598-8999967838 Q ss_pred HHHHHHHCC------CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCC Q ss_conf 113665223------5875278610367154333200224765434410015999987-996999997488777877777 Q gi|254780311|r 87 FVMNAWGKK------LEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDP 159 (177) Q Consensus 87 ~~~~aw~~~------~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~ 159 (177) +.+.+|.+. .+...+++++|.+++.+++||++.+ .| .+.|.++||+ +|+|+++.+-..+.++ T Consensus 79 ~sH~aW~~~~~~~~gi~~i~fPllaD~~~~ia~~yGvl~~---~G---~a~RatFiIDp~g~Ir~~~v~~~~vGR----- 147 (194) T PTZ00137 79 FSHLAWKKTDLRKGGVGNLKHPLFSDITRSISKSFGLLRD---DG---FSLRASVLIDKAGVVQHLAVNDLGIGR----- 147 (194) T ss_pred HHHHHHHHCHHHHCCCCCCCCCEEECCCCHHHHHCCCCCC---CC---CEEEEEEEECCCCEEEEEEECCCCCCC----- T ss_conf 8899996234865886773344563673358997698636---88---216789999999979999977987684----- Q ss_pred CCCCCHHHHHHHHHHHC Q ss_conf 32489999999998616 Q gi|254780311|r 160 YEISSPENVLKVIRESK 176 (177) Q Consensus 160 ~~vs~ae~iL~~Lk~~~ 176 (177) +++++|..|++.| T Consensus 148 ----nv~EiLR~l~Alq 160 (194) T PTZ00137 148 ----SVDETLRIFDAVQ 160 (194) T ss_pred ----CHHHHHHHHHHHH T ss_conf ----9899999999866 No 11 >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed Probab=99.97 E-value=1.4e-30 Score=184.70 Aligned_cols=149 Identities=23% Similarity=0.324 Sum_probs=120.8 Q ss_pred EEEECCCCCCCCCCCCCC-CEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 995367068840368884-0235898389749999822887874100101046531124553101102343035401136 Q gi|254780311|r 12 HMRVATVLPDGSKAFQWK-DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMN 90 (177) Q Consensus 12 ~ikvGd~~Pd~tl~~~~~-~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~ 90 (177) +++|||.||||+|+++++ .++++|+ +||+|||+|||+++||+|+.|.+ .+.+.++.+++.|+ +|+.+|.+.+..+. T Consensus 3 ~l~vG~~aPdF~l~~~~g~~v~L~d~-~gk~vvl~Fyp~~~tp~C~~e~~-~f~d~~~~f~~~g~-~VigIS~D~~~~~~ 79 (156) T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDF-QGKKVLVYFYPKAMTPGCTVQAC-GLRDNMDELKKAGV-VVLGISPDKPEKLS 79 (156) T ss_pred CCCCCCCCCCEEEECCCCCEEEHHHH-CCCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHHCCCE-EEEEECCCCHHHHH T ss_conf 89997999870848899999877996-89979999976878998746889-99999987532581-89987688899999 Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCC---CCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH Q ss_conf 6522358752786103671543332002247654---34410015999987-9969999974887778777773248999 Q gi|254780311|r 91 AWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV---GFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177) Q Consensus 91 aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~---g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177) +|.+..+.. +++|+|++++++++||+....... ..| ..|.++||+ +|+|.++|.+-.+ .++++ T Consensus 80 ~f~~~~~l~-f~lLsD~~~~v~~~ygv~~~~~~~g~~~~g--~~R~tfiID~~G~I~~v~~~v~~----------~~h~~ 146 (156) T PRK09437 80 KFAEKELLN-FTLLSDEDHQVAEQFGVWGEKKFMGKTYDG--IHRISFLIDEDGKIEHVFDKFKT----------KDHHD 146 (156) T ss_pred HHHHHHCCC-CCEEECCCHHHHHHCCCCCCCCCCCCCCCC--CCEEEEEECCCCEEEEEECCCCC----------CCCHH T ss_conf 999970999-748988980699984997544235654478--85069999999989999789998----------75399 Q ss_pred HHHHHHHHHC Q ss_conf 9999998616 Q gi|254780311|r 167 NVLKVIRESK 176 (177) Q Consensus 167 ~iL~~Lk~~~ 176 (177) +||+.||++. T Consensus 147 ~vL~~Lk~~~ 156 (156) T PRK09437 147 VVLDYLKENA 156 (156) T ss_pred HHHHHHHHHC T ss_conf 9999998529 No 12 >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an Probab=99.97 E-value=3.5e-30 Score=182.60 Aligned_cols=148 Identities=17% Similarity=0.276 Sum_probs=121.9 Q ss_pred ECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHC Q ss_conf 36706884036888402358983897499998228878741001010465311245531011023430354011366522 Q gi|254780311|r 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGK 94 (177) Q Consensus 15 vGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~ 94 (177) |||.+|||++..+.++++++|+.++|||||||||+||||+|++|.+ .+.+.+++|++.++ +++.+|+|..+.+.+|.+ T Consensus 1 vG~~aPdF~~~~~~g~i~l~dy~G~k~vvlffyP~dfT~vCttEl~-~~~~~~~eF~~~~~-~vlgiS~Ds~~sH~aW~~ 78 (203) T cd03016 1 LGDTAPNFEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELG-AFAKLAPEFKKRNV-KLIGLSVDSVESHIKWIE 78 (203) T ss_pred CCCCCCCCEEECCCCCEEHHHHCCCCEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHH T ss_conf 9785898786457785978997799789999666668987837899-99998999997498-799973786887888865 Q ss_pred CC----C-CCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHH Q ss_conf 35----8-75278610367154333200224765434410015999987-996999997488777877777324899999 Q gi|254780311|r 95 KL----E-IKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENV 168 (177) Q Consensus 95 ~~----~-~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~i 168 (177) .. + ...++++||..++.+++||++.... |.+ .+.|.++||| +|+|+++.+-.-+.++ +.+++ T Consensus 79 ~~~~~~g~~v~fPllaD~~~~ia~~yGvl~~~~--g~~-~a~R~~FIIDp~g~Ir~~~v~~~~vGR---------nvdEi 146 (203) T cd03016 79 DIEEYTGVEIPFPIIADPDREVAKLLGMIDPDA--GST-LTVRAVFIIDPDKKIRLILYYPATTGR---------NFDEI 146 (203) T ss_pred CHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC--CCC-CEEEEEEEECCCCEEEEEEECCCCCCC---------CHHHH T ss_conf 889756966231422278625888734437134--886-336789998999839999975877666---------88999 Q ss_pred HHHHHHHC Q ss_conf 99998616 Q gi|254780311|r 169 LKVIRESK 176 (177) Q Consensus 169 L~~Lk~~~ 176 (177) |..|++.| T Consensus 147 LR~ldAlQ 154 (203) T cd03016 147 LRVVDALQ 154 (203) T ss_pred HHHHHHHH T ss_conf 99999998 No 13 >PRK13189 peroxiredoxin; Provisional Probab=99.97 E-value=8.6e-30 Score=180.51 Aligned_cols=148 Identities=21% Similarity=0.400 Sum_probs=123.6 Q ss_pred EECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH Q ss_conf 53670688403688840235898389749999822887874100101046531124553101102343035401136652 Q gi|254780311|r 14 RVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWG 93 (177) Q Consensus 14 kvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~ 93 (177) .||+.+|||++....++++++++++|||+||||||+||||+|++|. ..+.+.+++|++.++ +++++|+|+.+.+.+|. T Consensus 3 ~iG~~aPdF~~~~~~G~~~l~~~~~gkwvvLffyP~DFT~VCttEl-~~~~~~~~eF~~~~~-~vigiS~Ds~~sH~aW~ 80 (215) T PRK13189 3 LIGDKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEF-VAFQKRYDEFRKLNT-ELIGLSIDQVFSHIKWV 80 (215) T ss_pred CCCCCCCCCEEECCCCCEEEHHHHCCCEEEEEECCCCCCCCCCHHH-HHHHHHHHHHHHHCC-EEEEEECCCHHHHHHHH T ss_conf 6878899988861579688579839988999978777898684599-999999999987197-79999468586899985 Q ss_pred CC----CCC-CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHH Q ss_conf 23----587-5278610367154333200224765434410015999987-99699999748877787777732489999 Q gi|254780311|r 94 KK----LEI-KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPEN 167 (177) Q Consensus 94 ~~----~~~-~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~ 167 (177) +. .+. ..+++++|.+++.+++||++.... |..+-|.+|||+ +|+|+++.+-..+.++ +.++ T Consensus 81 ~~~~~~~G~~i~fPliaD~~~~Is~~yGvl~~~~----~~~a~R~~FIIDp~g~Ir~~~v~~~~vGR---------nvdE 147 (215) T PRK13189 81 EWIKEKLGVEIEFPIIADDDGEIAKKLGMIHPGK----GTNTVRAVFVVDPKGIIRAILYYPQEVGR---------NMDE 147 (215) T ss_pred HCHHHHCCCCEEEEEEECCCCHHHHHCCCCCCCC----CCCEEEEEEEECCCCEEEEEEECCCCCCC---------CHHH T ss_conf 1878746965034478667264889749802588----87467479999999869999983888655---------8999 Q ss_pred HHHHHHHHC Q ss_conf 999998616 Q gi|254780311|r 168 VLKVIRESK 176 (177) Q Consensus 168 iL~~Lk~~~ 176 (177) +|..|++.| T Consensus 148 iLR~ldAlQ 156 (215) T PRK13189 148 ILRLVKALQ 156 (215) T ss_pred HHHHHHHHH T ss_conf 999999998 No 14 >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based Probab=99.97 E-value=5.8e-30 Score=181.44 Aligned_cols=140 Identities=23% Similarity=0.262 Sum_probs=112.9 Q ss_pred EECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH Q ss_conf 536706884036888-4023589838974999982288787410010104653112455310110234303540113665 Q gi|254780311|r 14 RVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92 (177) Q Consensus 14 kvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw 92 (177) ||||++|||+|.+++ +.++++|+ +|||+||+|||+||||+|+.|.+.+ .+.++.+. ++ +++++|+|.++.+++| T Consensus 1 kVGd~aPdF~l~~~~~~~v~lsd~-~Gk~~Vl~fyP~~~T~vC~~e~~~f-~~~~~~f~--~~-~v~gIS~Ds~~s~~~f 75 (143) T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRF-NKEAAKLD--NT-VVLTISADLPFAQKRW 75 (143) T ss_pred CCCCCCCCEEEECCCCCEEEHHHH-CCCEEEEEEEECCCCCCCCCHHHHH-HHHHHHCC--CC-EEEEEECCCHHHHHHH T ss_conf 999888883988899999876995-9986999998078998453159999-99987358--96-8999978999999999 Q ss_pred HCCCCCCEEEEEEC-CCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 22358752786103-67154333200224765434410015999987-99699999748877787777732489999999 Q gi|254780311|r 93 GKKLEIKNVKLLPD-GSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENVLK 170 (177) Q Consensus 93 ~~~~~~~~~~~l~D-~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL~ 170 (177) .++.+...+.+||| ..++++++||+.... .|+ +.|.++||+ +|+|+|+++-+.+.+ ..+.+.+|+ T Consensus 76 ~~~~~l~~~~lLSD~~~~~~~~~yGv~~~~--~g~---~~R~tfiID~~G~I~~~e~~~~~~~--------epd~~~~~~ 142 (143) T cd03014 76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKD--LGL---LARAVFVIDENGKVIYVELVPEITD--------EPDYEAALA 142 (143) T ss_pred HHHCCCCCCEEEECCCCCCHHHHHCCEECC--CCC---EEEEEEEECCCCEEEEEEECCCCCC--------CCCHHHHHC T ss_conf 987699896484649997367872905501--794---2218999999998999996788678--------989899951 Q ss_pred H Q ss_conf 9 Q gi|254780311|r 171 V 171 (177) Q Consensus 171 ~ 171 (177) + T Consensus 143 a 143 (143) T cd03014 143 A 143 (143) T ss_pred C T ss_conf 9 No 15 >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional Probab=99.96 E-value=2.5e-29 Score=178.02 Aligned_cols=145 Identities=19% Similarity=0.342 Sum_probs=118.8 Q ss_pred ECCCCCCCCCC----CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 36706884036----88840235898389749999822887874100101046531124553101102343035401136 Q gi|254780311|r 15 VATVLPDGSKA----FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMN 90 (177) Q Consensus 15 vGd~~Pd~tl~----~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~ 90 (177) ||.++|+|+.. ++.++++++|+ +|||+||||||++|||+|++|. ..+.+.+++|++.++ +++++|+|+.+.+. T Consensus 4 vg~~ap~F~~~a~~~g~~~~v~l~d~-~Gkw~VLffyP~DFT~VCtTEl-~~~~~~~~eF~~~n~-~vigiS~Ds~~sH~ 80 (187) T PRK10382 4 INTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTEL-GDVADHYEELQKLGV-DVYSVSTDTHFTHK 80 (187) T ss_pred CCCCCCCCEEEEEECCEEEEEEHHHH-CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCC-EEEEEECCCHHHHH T ss_conf 57709998776676997789856995-9987999982799898598999-999988999997499-79999259889999 Q ss_pred HHHCCC---CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH Q ss_conf 652235---875278610367154333200224765434410015999987-9969999974887778777773248999 Q gi|254780311|r 91 AWGKKL---EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177) Q Consensus 91 aw~~~~---~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177) +|.+.. +...+++++|.+++.+++||++... .|+ +.|.++||| +|+|+++.+-..+.++ +++ T Consensus 81 aW~~~~~~~~~i~fPlisD~~~~is~~ygvl~~~--~g~---a~Ra~FIIDp~g~Ir~~~~~~~~vGR---------n~~ 146 (187) T PRK10382 81 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMRED--EGL---ADRATFVVDPQGIIQAIEVTAEGIGR---------DAS 146 (187) T ss_pred HHHHHHHHCCCCCCCEEECCCCHHHHHCCCCCCC--CCE---EEEEEEEECCCCEEEEEEECCCCCCC---------CHH T ss_conf 9986453315878865788865799982996678--880---57789998899849999978999886---------999 Q ss_pred HHHHHHHHHC Q ss_conf 9999998616 Q gi|254780311|r 167 NVLKVIRESK 176 (177) Q Consensus 167 ~iL~~Lk~~~ 176 (177) ++|..|++.| T Consensus 147 EiLR~l~AlQ 156 (187) T PRK10382 147 DLLRKIKAAQ 156 (187) T ss_pred HHHHHHHHHH T ss_conf 9999999877 No 16 >PRK13599 putative peroxiredoxin; Provisional Probab=99.96 E-value=5.4e-29 Score=176.22 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=122.7 Q ss_pred EEECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH Q ss_conf 95367068840368884023589838974999982288787410010104653112455310110234303540113665 Q gi|254780311|r 13 MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92 (177) Q Consensus 13 ikvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw 92 (177) ..|||.+|||++.++.+...+++.++|||+||||||+||||+||+|.+ .+.+.+++|++.++ +++.+|+|+.+.+.+| T Consensus 2 ~~vGd~aPdF~l~tt~G~~~~~~d~~Gkw~VLffyP~DfTpvCttEl~-~f~~~~~eF~~~n~-~vigiS~Ds~~sH~~W 79 (215) T PRK13599 2 KLLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFV-EFARKANDFKELNT-ELIGLSVDQVFSHIKW 79 (215) T ss_pred CCCCCCCCCCEEECCCCCEECHHHHCCCEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHCCC-EEEEEECCCHHHHHHH T ss_conf 857875898786268997851899599889999820799985668899-99999999997598-8999847878899999 Q ss_pred HCC----CC-CCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH Q ss_conf 223----58-75278610367154333200224765434410015999987-9969999974887778777773248999 Q gi|254780311|r 93 GKK----LE-IKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177) Q Consensus 93 ~~~----~~-~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177) .+. .+ ...+++++|++++.+++||++... .|..+-|.+|||+ +|+|+++.+-+-+.++ +.+ T Consensus 80 ~~~i~~~~g~~i~FPiiaD~~~~ia~~yGml~~~----~g~~t~R~~FiIDp~~~ir~~~~yp~~vGR---------nvd 146 (215) T PRK13599 80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPG----KGTNTVRAVFIVDDKGTIRLIMYYPQEVGR---------NVD 146 (215) T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCC----CCCCEEEEEEEECCCCCEEEEEECCCCCCC---------CHH T ss_conf 8538875697751225515406599984982678----887577589998999948999978987786---------999 Q ss_pred HHHHHHHHHC Q ss_conf 9999998616 Q gi|254780311|r 167 NVLKVIRESK 176 (177) Q Consensus 167 ~iL~~Lk~~~ 176 (177) ++|..|++.| T Consensus 147 EiLR~ldAlQ 156 (215) T PRK13599 147 EILRALKALQ 156 (215) T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 17 >PRK13191 putative peroxiredoxin; Provisional Probab=99.96 E-value=1.7e-28 Score=173.48 Aligned_cols=147 Identities=20% Similarity=0.372 Sum_probs=121.3 Q ss_pred ECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHC Q ss_conf 36706884036888402358983897499998228878741001010465311245531011023430354011366522 Q gi|254780311|r 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGK 94 (177) Q Consensus 15 vGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~ 94 (177) +||.+|||++....++++++|+++|||+||||||++|||+||+|.+ .+.+.+++|++.++ +++.+|+|..+.+.+|.+ T Consensus 10 iG~~aPdF~~~tt~G~i~l~d~~~gkw~VLffyP~DFTpVCtTEl~-~f~~~~~eF~k~n~-~vlg~S~Ds~~sH~aW~~ 87 (230) T PRK13191 10 IGEKFPEMEVITTHGKIKLPDDYKGKWFVLFSHPGDFTPVCTTEFY-SFAKRYEDFKKLNT-ELIGLSVDSNISHIEWVN 87 (230) T ss_pred CCCCCCCCEEECCCCCEEEHHHHCCCEEEEEECCCCCCCCCHHHHH-HHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHH T ss_conf 7992899881436895873898199889999788988995979999-99988999997599-899997896888999987 Q ss_pred ----CCCC-CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHH Q ss_conf ----3587-5278610367154333200224765434410015999987-996999997488777877777324899999 Q gi|254780311|r 95 ----KLEI-KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENV 168 (177) Q Consensus 95 ----~~~~-~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~i 168 (177) ..+. ..+++++|++++.++.||++.. +. +..+-|.+|||+ +|+|++..+-....+. +.+++ T Consensus 88 ~i~~~~g~~i~fPiiaD~~~~ia~~yGml~~-e~---~~~tvRavFIIDP~g~Ir~~~~yp~~vGR---------NvdEi 154 (230) T PRK13191 88 WIEKNLKVEIPFPIIADPMGNVAKRLGMIHA-ES---STSTVRAVFIVDDKGTVRLIMYYPLEIGR---------NIDEI 154 (230) T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHCCCCCC-CC---CCCEEEEEEEECCCCEEEEEEECCCCCCC---------CHHHH T ss_conf 6898359775302665686779998598144-77---86436689999999829999967977685---------98999 Q ss_pred HHHHHHHC Q ss_conf 99998616 Q gi|254780311|r 169 LKVIRESK 176 (177) Q Consensus 169 L~~Lk~~~ 176 (177) |..|.+.| T Consensus 155 LRvldALQ 162 (230) T PRK13191 155 LRAIKALQ 162 (230) T ss_pred HHHHHHHH T ss_conf 99999998 No 18 >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Probab=99.96 E-value=3.7e-28 Score=171.72 Aligned_cols=149 Identities=24% Similarity=0.407 Sum_probs=123.2 Q ss_pred EEEEECCCCCCCCCCCC-C----CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 99953670688403688-8----402358983897499998228878741001010465311245531011023430354 Q gi|254780311|r 11 FHMRVATVLPDGSKAFQ-W----KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVND 85 (177) Q Consensus 11 ~~ikvGd~~Pd~tl~~~-~----~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d 85 (177) |+..||+++|||+...- . .+++++|+.+ ||+||||||++|||+|++| +..+.+.+++|++.|+ +++.+|+|+ T Consensus 1 ~~~lIg~~aP~F~~~a~~~~~~~~~i~l~~~~g-kw~VLff~P~DFTfVCpTE-i~af~~~~~eF~~~g~-eVigvS~Ds 77 (194) T COG0450 1 MMSLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGV-EVIGVSTDS 77 (194) T ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECHHHCC-CEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHCCC-EEEEEECCC T ss_conf 955358758983888785685036786366568-5799991468878558401-9999765288998599-899996684 Q ss_pred CHHHHHHHCC----CCC--CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCC Q ss_conf 0113665223----587--5278610367154333200224765434410015999987-99699999748877787777 Q gi|254780311|r 86 AFVMNAWGKK----LEI--KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATD 158 (177) Q Consensus 86 ~~~~~aw~~~----~~~--~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d 158 (177) .|++.+|.+. .+. ..+++++|.+++.++.||++....+ . +-|.++||| +|+|+++.+...+.+. T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~P~iaD~~~~vs~~ygvl~~~~g--~---a~R~~FIIDp~g~ir~~~v~~~~iGR---- 148 (194) T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEG--L---ALRGTFIIDPDGVIRHILVNPLTIGR---- 148 (194) T ss_pred HHHHHHHHHCHHHCCCCCCEECCEEECCCHHHHHHCCCCCCCCC--C---CEEEEEEECCCCEEEEEEEECCCCCC---- T ss_conf 89899997367750983542006687682268897098056777--2---04689999999829999972687775---- Q ss_pred CCCCCCHHHHHHHHHHHC Q ss_conf 732489999999998616 Q gi|254780311|r 159 PYEISSPENVLKVIRESK 176 (177) Q Consensus 159 ~~~vs~ae~iL~~Lk~~~ 176 (177) +++++|..|++.| T Consensus 149 -----n~dEilR~idAlq 161 (194) T COG0450 149 -----NVDEILRVIDALQ 161 (194) T ss_pred -----CHHHHHHHHHHHH T ss_conf -----7899999999988 No 19 >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Probab=99.95 E-value=3.3e-27 Score=166.63 Aligned_cols=145 Identities=24% Similarity=0.363 Sum_probs=118.8 Q ss_pred EEECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 9536706884036888-402358983897499998228878741001010465311245531011023430354011366 Q gi|254780311|r 13 MRVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 13 ikvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) |+|||++|+|+|.+.+ +.++++|+.++|+|||+|||++|||+|+.+ ++.+.+.++.+++.++ .|+.+|.+++..+++ T Consensus 1 l~vGd~aP~F~l~~~~g~~v~L~d~~g~~~vvl~F~p~~~cp~C~~e-~~~~~~~~~~~~~~~v-~Vv~IS~D~~~~~~~ 78 (149) T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGA-EVLGISVDSPFSLRA 78 (149) T ss_pred CCCCCCCCCEEEECCCCCEEEHHHHCCCCEEEEEEECCCCCCCCCHH-HHHHHHHHHHHHCCCE-EEEEECCCCHHHHHH T ss_conf 98979886979499998998689976998099999888899975878-9888888887634783-999636999999999 Q ss_pred HHCCCCCCEEEEEEC--CCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHH Q ss_conf 522358752786103--67154333200224765434410015999987-996999997488777877777324899999 Q gi|254780311|r 92 WGKKLEIKNVKLLPD--GSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENV 168 (177) Q Consensus 92 w~~~~~~~~~~~l~D--~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~i 168 (177) |.++.+.. +++|+| +.++++++||+.... .|+ +.|.++||+ +|+|+|.|+.+. ++.++..++ T Consensus 79 f~~~~~l~-fpllsD~~~~~~va~~ygv~~~~--~g~---~~r~tfiID~~G~V~~~~v~~~---------~~~r~~~~~ 143 (149) T cd03018 79 WAEENGLT-FPLLSDFWPHGEVAKAYGVFDED--LGV---AERAVFVIDRDGIIRYAWVSDD---------GEPRDLPDY 143 (149) T ss_pred HHHHHCCC-CEEEEECCCCCCHHHHCCCCCCC--CCC---CCCEEEEECCCCEEEEEEEECC---------CCCCCHHHH T ss_conf 99987999-61999689870249886995067--798---4488999979998999999079---------967885799 Q ss_pred HHHHHH Q ss_conf 999986 Q gi|254780311|r 169 LKVIRE 174 (177) Q Consensus 169 L~~Lk~ 174 (177) |+.|.+ T Consensus 144 ~~~l~a 149 (149) T cd03018 144 DEALDA 149 (149) T ss_pred HHHHCC T ss_conf 999659 No 20 >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a Probab=99.94 E-value=1.1e-26 Score=163.86 Aligned_cols=138 Identities=31% Similarity=0.403 Sum_probs=117.7 Q ss_pred CCCCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCC Q ss_conf 0688403688-840235898389749999822887874100101046531124553101102343035401136652235 Q gi|254780311|r 18 VLPDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96 (177) Q Consensus 18 ~~Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~~ 96 (177) +||+|+|.+. .+.++++++ +||+|||+|+|++|||+|+.| +|.+.+.++.+.+.++ .++++|.|++..+++|.+.. T Consensus 1 kAP~f~l~~~~g~~~~l~~~-~gk~vvl~f~p~~~~p~C~~e-~~~~~~~~~~~~~~g~-~vv~Is~d~~~~~~~~~~~~ 77 (140) T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGA-EVLGVSVDSPFSHKAWAEKE 77 (140) T ss_pred CCCCEEEECCCCCEEEHHHH-CCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHH T ss_conf 99988958899999867997-989499999999889996144-6889999887504771-68776289999999999984 Q ss_pred CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 875278610367154333200224765434410015999987-9969999974887778777773248999999 Q gi|254780311|r 97 EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENVL 169 (177) Q Consensus 97 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL 169 (177) +...+++++|++++++++||+..+... ++.++.|+++||+ +|+|++++++..+ ..++++++| T Consensus 78 ~~~~f~~l~D~~~~~~~~ygv~~~~~~--~~~~~~r~tfvId~~G~I~~~~i~~~~---------~~~~~~~~l 140 (140) T cd02971 78 GGLNFPLLSDPDGEFAKAYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP---------TGRNAEELL 140 (140) T ss_pred CCCCCEEEECCCHHHHHHCCCCCCCCC--CCCCCCCEEEEECCCCEEEEEEECCCC---------CCCCHHHHC T ss_conf 588865888686899998399734655--789521089999999989999988999---------997957709 No 21 >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w Probab=99.92 E-value=3.5e-24 Score=150.31 Aligned_cols=138 Identities=23% Similarity=0.296 Sum_probs=112.4 Q ss_pred CCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCC Q ss_conf 706884036888-4023589838974999982288787410010104653112455310110234303540113665223 Q gi|254780311|r 17 TVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKK 95 (177) Q Consensus 17 d~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~ 95 (177) |+||||++.+.+ +.++++| ++||+|||+|||+++||+|+.| ++.+.+.++.+++.|+ .++.+|.+++..+.+|.+. T Consensus 1 d~APdF~l~~~~G~~~~L~d-~~Gk~vvl~F~p~~~~p~C~~e-~~~~~~~~~~~~~~g~-~vv~IS~d~~~~~~~~~~~ 77 (140) T cd03017 1 DKAPDFTLPDQDGETVSLSD-LRGKPVVLYFYPKDDTPGCTKE-ACDFRDLYEEFKALGA-VVIGVSPDSVESHAKFAEK 77 (140) T ss_pred CCCCCEEEECCCCCEEEHHH-HCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHH T ss_conf 98898486889989987899-7998499999668789978899-9999999999874198-4899827889999999998 Q ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 5875278610367154333200224765434410015999987-99699999748877787777732489999999 Q gi|254780311|r 96 LEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPENVLK 170 (177) Q Consensus 96 ~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL~ 170 (177) .+.. +++|+|++++++++||+.....+. .....|+++||+ +|+|+++|..-.+. .+++++|+ T Consensus 78 ~~~~-fp~l~D~~~~v~~~ygv~~~~~~~--~~~~~R~tfvId~~G~I~~i~~~~~~~----------~~~~~~l~ 140 (140) T cd03017 78 YGLP-FPLLSDPDGKLAKAYGVWGEKKKK--YMGIERSTFLIDPDGKIVKVWRKVKPK----------GHAEEVLE 140 (140) T ss_pred HCCC-CEEEEECCHHHHHHCCCCCCCCCC--CCCEEEEEEEECCCCEEEEEECCCCCC----------CHHHHHHC T ss_conf 6998-379994973999986998657666--674767999998999899998589945----------48989629 No 22 >KOG0855 consensus Probab=99.89 E-value=8e-23 Score=142.99 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=117.6 Q ss_pred EEEEECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHH Q ss_conf 999536706884036888-4023589838974999982288787410010104653112455310110234303540113 Q gi|254780311|r 11 FHMRVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVM 89 (177) Q Consensus 11 ~~ikvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~ 89 (177) .++.+||.+|||||.+++ ..+++.++-++|.||||+||.|-||+||.+.|.++++| +.+++.+. +++.+|-+|+-.+ T Consensus 61 ~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY-~k~kka~a-eV~GlS~D~s~sq 138 (211) T KOG0855 61 LKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNY-EKFKKAGA-EVIGLSGDDSASQ 138 (211) T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCH-HHHHHCCC-EEEEECCCCHHHH T ss_conf 024327747872212679986560232378727999821678998531124420248-98863585-5886325736777 Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 66522358752786103671543332002247654344100159999879969999974887778777773248999999 Q gi|254780311|r 90 NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVL 169 (177) Q Consensus 90 ~aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL 169 (177) +++....+.. ..+|+|+.+++.+.||...+.. |..+.|..+|.++|.++.++.+.... | +| +.++.| T Consensus 139 KaF~sKqnlP-YhLLSDpk~e~ik~lGa~k~p~----gg~~~Rsh~if~kg~~k~~ik~~~is------P-ev-svd~a~ 205 (211) T KOG0855 139 KAFASKQNLP-YHLLSDPKNEVIKDLGAPKDPF----GGLPGRSHYIFDKGGVKQLIKNNQIS------P-EV-SVDEAL 205 (211) T ss_pred HHHHHHCCCC-EEEECCCCHHHHHHHCCCCCCC----CCCCCCEEEEEECCCEEEEEEECCCC------C-CC-CHHHHH T ss_conf 8764122587-0542074212788718988887----88534147999569737998723547------5-10-088898 Q ss_pred HHHHH Q ss_conf 99986 Q gi|254780311|r 170 KVIRE 174 (177) Q Consensus 170 ~~Lk~ 174 (177) +.|++ T Consensus 206 k~~~~ 210 (211) T KOG0855 206 KFLKA 210 (211) T ss_pred HHHHC T ss_conf 88752 No 23 >pfam08534 Redoxin Redoxin. This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Probab=99.87 E-value=1.1e-21 Score=136.75 Aligned_cols=139 Identities=32% Similarity=0.416 Sum_probs=109.1 Q ss_pred ECCCCCCCCCCC---CCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 367068840368---88402358983897499998228878741001010465311245531011023430354011366 Q gi|254780311|r 15 VATVLPDGSKAF---QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 15 vGd~~Pd~tl~~---~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) .||.+|+|+|.+ +++.+++++ |+||++||+|+|++++|.|..+ ++.+.+.++.+...+++.+.+.+.+++....+ T Consensus 1 ~G~~aP~f~l~~~~~dg~~~~l~~-~~Gk~vvl~f~~~~wCp~C~~e-~~~l~~~~~~~~~~~~~iv~I~~~~~~~~~~~ 78 (142) T pfam08534 1 AGDKAPDFTLPDVALDGKTVSLSD-FKGKKVVLNFWPGAFCPTCSAE-HPYLEKLSKLYKAKGVDVVAVNASNDPFFVMN 78 (142) T ss_pred CCCCCCCEECCCCCCCCCEECHHH-HCCCEEEEEEECCCCCCCCCCH-HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH T ss_conf 909994718127578996971999-8999699999789889264563-56566778874165338998833760788999 Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 522358752786103671543332002247654344100159999879969999974887778777773248999999 Q gi|254780311|r 92 WGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVL 169 (177) Q Consensus 92 w~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL 169 (177) |.++.+.. +++++|++++++++||+..+ .+++ ..++++|..||+|.+.++.+.+ .+.++++++| T Consensus 79 ~~~~~~~~-fp~l~D~~~~~~~~~gv~~~---~~~~--~p~~~lId~~G~I~~~~~g~~~--------~~~~~~~~~l 142 (142) T pfam08534 79 FWAKEGLK-YPVLADGDGAFTKAYGLTED---AGLR--TPRYFLIDEDGKVVYLEVGPDP--------GDVSDAEAVL 142 (142) T ss_pred HHHHHCCC-CEEEECCCHHHHHHCCCCCC---CCCE--EEEEEEECCCCEEEEEEECCCC--------CCCCCHHHHC T ss_conf 99986997-07998696499998299744---6630--7689999279979999977998--------8885869869 No 24 >KOG0852 consensus Probab=99.77 E-value=4.6e-18 Score=117.37 Aligned_cols=149 Identities=24% Similarity=0.328 Sum_probs=114.6 Q ss_pred EEEEECCCCCCCCC----CCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 99953670688403----68884023589838974999982288787410010104653112455310110234303540 Q gi|254780311|r 11 FHMRVATVLPDGSK----AFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 (177) Q Consensus 11 ~~ikvGd~~Pd~tl----~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~ 86 (177) |++.+..++|+|.- ....++++++|| +||+|+|+|||++||-+|.+|-. .|...+.+|++.+- +++.+|++.. T Consensus 2 ~~~~~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIi-afSd~~~eF~~~n~-eVig~S~DS~ 78 (196) T KOG0852 2 MMEVVFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEII-AFSDRAPEFRKLNT-EVLGISTDSV 78 (196) T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEHHH-CCCEEEEEECCCCEEEECCHHHH-HHHHHHHHHHHCCC-EEEEEECCCH T ss_conf 744457888876325897680017750010-56389998558741047754664-56565788886297-5999863324 Q ss_pred HHHHHHHCC------CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCC Q ss_conf 113665223------5875278610367154333200224765434410015999987-996999997488777877777 Q gi|254780311|r 87 FVMNAWGKK------LEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDP 159 (177) Q Consensus 87 ~~~~aw~~~------~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~ 159 (177) |.+-||... .+...+++++|.+.+.++.||++...++. +-|-.+||+ +|+++++-+..-+.+. T Consensus 79 fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~-----~lRglfIId~~gi~R~it~NDlpvgR----- 148 (196) T KOG0852 79 FSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGI-----ALRGLFIIDPDGILRQITINDLPVGR----- 148 (196) T ss_pred HHHHHHHCCCHHHCCCCCCCCCEEECCCHHHHHHCCCEECCCCC-----CEEEEEEECCCCCEEEEEECCCCCCC----- T ss_conf 33466765854438967656633316324567761846347884-----12116898466515776532567773----- Q ss_pred CCCCCHHHHHHHHHHHC Q ss_conf 32489999999998616 Q gi|254780311|r 160 YEISSPENVLKVIRESK 176 (177) Q Consensus 160 ~~vs~ae~iL~~Lk~~~ 176 (177) +.+++|..+++-| T Consensus 149 ----SVdE~lRLvqAfQ 161 (196) T KOG0852 149 ----SVDETLRLVQAFQ 161 (196) T ss_pred ----CHHHHHHHHHHHH T ss_conf ----3899999998873 No 25 >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Probab=99.77 E-value=2.2e-18 Score=119.08 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=104.1 Q ss_pred EEECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 9536706884036888-402358983897499998228878741001010465311245531011023430354011366 Q gi|254780311|r 13 MRVATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 13 ikvGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) ++|||++|||++.+.+ +++++.+ |+||+.||.-+|.-.||+|..+.- -| .+...+.+...++|+|+|-||++.+ T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~-~~gk~~vi~v~PSiDT~VC~~qvr-~F---n~~aa~~~~~~Vl~IS~DLPFAq~R 92 (158) T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLAD-FAGKKKVISVFPSIDTPVCATQVR-KF---NEEAAKLGNTVVLCISMDLPFAQKR 92 (158) T ss_pred CCCCCCCCCEEEECCCCCCEECCC-CCCCEEEEEECCCCCCCHHHHHHH-HH---HHHHHCCCCCEEEEEECCCHHHHHH T ss_conf 766886875489757410102233-588569999825898734468899-99---9998425992799996789658763 Q ss_pred HHCCCCCCEEEEEECCCH-HHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECCC Q ss_conf 522358752786103671-54333200224765434410015999987-996999997488 Q gi|254780311|r 92 WGKKLEIKNVKLLPDGSG-EFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFVEEG 150 (177) Q Consensus 92 w~~~~~~~~~~~l~D~~~-~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~ 150 (177) |+...++..+..+||... +|-+.||+.+.... |-....|.++++| +|+|.|.-.-+. T Consensus 93 fC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egp--L~gLlARaV~V~De~g~V~y~elv~e 151 (158) T COG2077 93 FCGAEGIENVITLSDFRDRAFGENYGVLINEGP--LAGLLARAVFVLDENGKVTYSELVPE 151 (158) T ss_pred HHHHCCCCCCEEHHHHHHHHHHHHHCEEECCCC--CCCEEEEEEEEECCCCCEEEEECCCH T ss_conf 666528665167155302456575277852564--24703569999838993999871404 No 26 >KOG0854 consensus Probab=99.75 E-value=1.2e-17 Score=115.08 Aligned_cols=153 Identities=22% Similarity=0.353 Sum_probs=120.7 Q ss_pred EEEECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 99536706884036888402358983897499998228878741001010465311245531011023430354011366 Q gi|254780311|r 12 HMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 12 ~ikvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) .+++||.+|+|+....-..+..+|++++.|.|||+.|++|||+||+| +..+..+..+|.+.++ ..+..|+++-..+.. T Consensus 5 ~l~lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTE-lgr~Akl~pEF~KRnv-KlialS~d~vesH~~ 82 (224) T KOG0854 5 RLRLGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTE-LGRFAKLAPEFDKRNV-KLIALSVDDVESHKD 82 (224) T ss_pred CCCCCCCCCCCCCCCCCCCEEHHHHCCCCEEEEECCCCCCCCCHHHH-HHHHHHHCHHHHHCCC-EEEEEEHHHHHHHHH T ss_conf 31026757875122432624553530660589741766677510577-7788863726664586-578865316777889 Q ss_pred HHCCC--------CCCEEEEEECCCHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCC Q ss_conf 52235--------8752786103671543332002247--65434410015999987-9969999974887778777773 Q gi|254780311|r 92 WGKKL--------EIKNVKLLPDGSGEFTRKMGMLVYK--DNVGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPY 160 (177) Q Consensus 92 w~~~~--------~~~~~~~l~D~~~~~~~~~g~~~~~--~~~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~ 160 (177) |-+.. ..-.+++++|++.+.+-.++|+-.. ...|+|. .-|.++|++ +-+|+-.+.-+...+. T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~-T~Ravfvi~pdkKirLs~lYP~ttGR------ 155 (224) T KOG0854 83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGK-TVRAVFVIDPDKKIRLSFLYPSTTGR------ 155 (224) T ss_pred HHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHCCCCHHHCCCCCCCC-EEEEEEEECCCCEEEEEEECCCCCCC------ T ss_conf 99999998742677789875458715465653456976748877883-67899997887617999971355676------ Q ss_pred CCCCHHHHHHHHHHHC Q ss_conf 2489999999998616 Q gi|254780311|r 161 EISSPENVLKVIRESK 176 (177) Q Consensus 161 ~vs~ae~iL~~Lk~~~ 176 (177) .-++||..|-+.| T Consensus 156 ---N~dEiLRvidsLq 168 (224) T KOG0854 156 ---NFDEILRVIDSLQ 168 (224) T ss_pred ---CHHHHHHHHHHHH T ss_conf ---8899999998875 No 27 >pfam00578 AhpC-TSA AhpC/TSA family. This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Probab=99.72 E-value=4.1e-17 Score=112.24 Aligned_cols=122 Identities=30% Similarity=0.478 Sum_probs=101.4 Q ss_pred ECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH Q ss_conf 36706884036888-40235898389749999822887874100101046531124553101102343035401136652 Q gi|254780311|r 15 VATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWG 93 (177) Q Consensus 15 vGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~ 93 (177) ||+.+|+|++.+.. +.+++++ ++||++||.|+++.+.|.|.. ++|.+.+.++.++++++ .++.++.+++..+.+|. T Consensus 1 iG~~aP~f~l~d~~G~~~~l~~-~~gk~~vl~f~~~~wC~~C~~-~~~~l~~~~~~~~~~~~-~vv~is~d~~~~~~~~~ 77 (124) T pfam00578 1 VGDKAPDFELPDLDGKEVSLSD-YKGKWVVLFFYPKDFTPVCTT-ELPALADLYEEFKKLGV-EVLGVSVDSPESHKKFA 77 (124) T ss_pred CCCCCCCCEEECCCCCEEEHHH-HCCCEEEEEEECCCCCCCHHH-HHHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHH T ss_conf 9789986187989969984999-899919999988999927299-99999874432313587-46678589999999999 Q ss_pred CCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEE Q ss_conf 235875278610367154333200224765434410015999987-9969999 Q gi|254780311|r 94 KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESW 145 (177) Q Consensus 94 ~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~ 145 (177) +..+.. +++++|.++..++++|+...... .+.++++||+ ||+|.|+ T Consensus 78 ~~~~~~-~~~l~D~~~~~~~~~gv~~~~~~-----~~~P~~~lID~~G~I~yi 124 (124) T pfam00578 78 EKLGLP-FPLLSDPDGEVARAYGVLNEEAG-----GALRTTFVIDPDGKIRYI 124 (124) T ss_pred HHHCCC-CEEEEECCCHHHHHCCCCCCCCC-----CEEEEEEEECCCCEEEEC T ss_conf 985999-47999597499998599846679-----882489999899979879 No 28 >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Probab=99.64 E-value=2.5e-15 Score=102.59 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=100.4 Q ss_pred CCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCC Q ss_conf 06884036888-40235898389749999822887874100101046531124553101102343035401136652235 Q gi|254780311|r 18 VLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96 (177) Q Consensus 18 ~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~~ 96 (177) .+|||+|++.. +.++++++.+++++||+||++++.|.|.. +++.+...++.+.+.|+ .++.++.+++....++.+.. T Consensus 1 ~APdf~L~~~~G~~v~l~~~~~~~~vvl~F~R~~~Cp~C~~-~l~~l~~~~~~~~~~gv-~vvaIs~~~~~~~~~~~~~~ 78 (149) T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCRE-YLRALSKLLPELDALGV-ELVAVGPESPEKLEAFDKGK 78 (149) T ss_pred CCCCEEEECCCCCEEECHHHCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHC T ss_conf 99970857899898976798099979999977899942147-19899988999987696-59999279999999999865 Q ss_pred CCCEEEEEECCCHHHHHHHHCCCCCCCCC----------------C--CEEEEEEEEEEC-CCEEEEEEEC Q ss_conf 87527861036715433320022476543----------------4--410015999987-9969999974 Q gi|254780311|r 97 EIKNVKLLPDGSGEFTRKMGMLVYKDNVG----------------F--GLRSWRYGALIK-DMVVESWFVE 148 (177) Q Consensus 97 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~g----------------~--g~rs~R~a~Ii~-dG~I~~~~~E 148 (177) +.. +++++|++.+.++++|+........ . ......-++||+ ||+|.+.+++ T Consensus 79 ~~~-f~vl~D~~~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~fvi~~~g~I~~~h~~ 148 (149) T cd02970 79 FLP-FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149) T ss_pred CCC-CEEEECCCHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEC T ss_conf 998-3699849779999869558763666467887354335678989876746779999999989999817 No 29 >PRK03147 thiol-disulfide oxidoreductase; Provisional Probab=99.56 E-value=3.5e-14 Score=96.46 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=101.8 Q ss_pred CCCEEEEEEECCCCCCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 8815999953670688403688-840235898389749999822887874100101046531124553101102343035 Q gi|254780311|r 6 IPQVVFHMRVATVLPDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVN 84 (177) Q Consensus 6 ip~~~~~ikvGd~~Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~ 84 (177) ..+-..+++||+.||+|++.+. ++.++++| ++||.|||.|. +.+-|.|..|+ |.....++.++..++ .++.++.+ T Consensus 29 ~~~~~~~~~iG~~aP~f~l~~l~G~~v~lsd-~kGK~vll~FW-AtWC~pC~~E~-P~L~~l~~~~~~~~v-~vi~i~~d 104 (176) T PRK03147 29 FFADKEKMQVGKEAPNFVLTDLEGKKIELKD-LKGKGVFLNFW-GTWCKPCEKEM-PYMNELYPKYKEKGV-EIIAVNVD 104 (176) T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEHHH-HCCCEEEEEEE-CCCCCCHHHHH-HHHHHHHHHHHCCCE-EEEEECCC T ss_conf 7778752337990897162789989871899-69997999997-89792754671-559999998530644-78522078 Q ss_pred CCH-HHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 401-13665223587527861036715433320022476543441001599998-7996999997488777877777324 Q gi|254780311|r 85 DAF-VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFVEEGFSDNCATDPYEI 162 (177) Q Consensus 85 d~~-~~~aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~E~~~~~~~~~d~~~v 162 (177) +.. ...++.+..+. .++.+.|.++..+..+|.. +..++++| .+|+|++.++-+ .+. T Consensus 105 ~~~~~v~~f~~~~~~-~~pv~~D~~~~~~~~~~v~-----------~~P~t~lId~~G~I~~~~~G~----------i~~ 162 (176) T PRK03147 105 ETDIAVKNFVNQYGL-KFPVAIDKGRQVIDAYGVG-----------PLPTTFLIDKDGKVVKVITGE----------MTE 162 (176) T ss_pred CCHHHHHHHHHHCCC-CCEEEECCCCHHHHHCCCC-----------CCCEEEEECCCCEEEEEEECC----------CCH T ss_conf 878889888987099-6228987973589876999-----------888699997999799999789----------999 Q ss_pred CCHHHHHHHHHH Q ss_conf 899999999986 Q gi|254780311|r 163 SSPENVLKVIRE 174 (177) Q Consensus 163 s~ae~iL~~Lk~ 174 (177) ...+++|+.|++ T Consensus 163 ~~l~~~i~~lk~ 174 (176) T PRK03147 163 EMLEEYLNKIKP 174 (176) T ss_pred HHHHHHHHHHHC T ss_conf 999999998744 No 30 >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Probab=99.37 E-value=4e-12 Score=85.33 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=84.7 Q ss_pred CCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCC--------C Q ss_conf 6706884036888-402358983897499998228878741001010465311245531011023430354--------0 Q gi|254780311|r 16 ATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVND--------A 86 (177) Q Consensus 16 Gd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d--------~ 86 (177) |++||||+|.+.+ +.++++|+ +++++|++++.+.+.|.|.. ..|.+...+..+...|+ .++.+++|+ + T Consensus 1 G~~APdF~L~d~~G~~~~Lsd~-~~~k~vvl~F~~~~CP~c~~-~~p~l~~l~~~~~~~gv-~~lgVn~~~~~~~~~ds~ 77 (171) T cd02969 1 GSPAPDFSLPDTDGKTYSLADF-ADGKALVVMFICNHCPYVKA-IEDRLNRLAKEYGAKGV-AVVAINSNDIEAYPEDSP 77 (171) T ss_pred CCCCCCCEEECCCCCEEEHHHH-CCCCEEEEEEECCCCHHHHH-HHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCH T ss_conf 9899762713799899868997-79998999995899917888-88765567767634782-899996687443755699 Q ss_pred HHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEE Q ss_conf 1136652235875278610367154333200224765434410015999987-99699999 Q gi|254780311|r 87 FVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWF 146 (177) Q Consensus 87 ~~~~aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~ 146 (177) ..+.++.+..+.. +++|.|+.++.+++||..... .++||+ +|+|.|-- T Consensus 78 ~~~~~~~~~~~~~-fPvL~D~~g~va~~yg~~~tP-----------~~fvID~~G~i~YrG 126 (171) T cd02969 78 ENMKAKAKEHGYP-FPYLLDETQEVAKAYGAACTP-----------DFFLFDPDGKLVYRG 126 (171) T ss_pred HHHHHHHHHHCCC-CEEEEECCCHHHHHCCCCCCC-----------EEEEECCCCEEEEEC T ss_conf 9999999870237-179995897499974996488-----------079988999899868 No 31 >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Probab=98.72 E-value=1.3e-07 Score=60.99 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=77.9 Q ss_pred CCCCCCCCCCCC---CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECC-CCHHHHHH Q ss_conf 706884036888---40235898389749999822887874100101046531124553101102343035-40113665 Q gi|254780311|r 17 TVLPDGSKAFQW---KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVN-DAFVMNAW 92 (177) Q Consensus 17 d~~Pd~tl~~~~---~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~-d~~~~~aw 92 (177) ..||+|++.+.+ +.++++| |+||.|||.|. +.+-|.|-.|+ |...+.+ ++.++ .++.++.. ++....+| T Consensus 1 kpAP~f~l~~ldG~~~~ls~~d-~kGk~vvl~FW-AtWC~pC~~e~-P~l~~l~---~~~~~-~vv~v~~~d~~~~~~~~ 73 (127) T cd03010 1 KPAPAFSLPALPGPDKTLTSAD-LKGKPYLLNVW-ASWCAPCREEH-PVLMALA---RQGRV-PIYGINYKDNPENALAW 73 (127) T ss_pred CCCCCEECCCCCCCCEEECHHH-HCCCEEEEEEE-CCCCHHHHHHC-CHHHHHH---HCCCE-EEEEEECCCCHHHHHHH T ss_conf 9899627117789952856999-29998999999-89586688868-1078884---25835-89986347899999999 Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEE Q ss_conf 223587527861036715433320022476543441001599998-7996999997 Q gi|254780311|r 93 GKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFV 147 (177) Q Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~ 147 (177) .+..+......+.|..+..++.++.. |+ =+++|| .+|+|.+.++ T Consensus 74 ~~~~~~~~~~~~~D~~~~~~~~~~v~------~~-----Ptt~liD~~G~I~~~~~ 118 (127) T cd03010 74 LARHGNPYAAVGFDPDGRVGIDLGVY------GV-----PETFLIDGDGIIRYKHV 118 (127) T ss_pred HHHHCCCCCEEEECCCCCHHHHCCCC------CC-----CCEEEEECCCEEEEEEE T ss_conf 99839986447755886322307855------47-----81999919997999998 No 32 >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Probab=98.71 E-value=1.4e-07 Score=60.93 Aligned_cols=111 Identities=28% Similarity=0.402 Sum_probs=79.1 Q ss_pred CCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHCCCC Q ss_conf 84036888-402358983897499998228878741001010465311245531011023430354--011366522358 Q gi|254780311|r 21 DGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVND--AFVMNAWGKKLE 97 (177) Q Consensus 21 d~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d--~~~~~aw~~~~~ 97 (177) ||++.+.. +.++++++ +||.+||+|. +.+-|.|.. ++|...+.++.++..++ .++.++.++ +-..+.|.+..+ T Consensus 1 df~l~d~~G~~~~l~~~-~gk~~vl~f~-a~wC~~C~~-~~~~l~~~~~~~~~~~v-~vi~i~~~~~~~~~~~~~~~~~~ 76 (116) T cd02966 1 DFSLPDLDGKPVSLSDL-KGKVVLVNFW-ASWCPPCRA-EMPELEALAKEYKDDGV-EVVGVNVDDDDPAAVKAFLKKYG 76 (116) T ss_pred CCCEECCCCCEEEHHHH-CCCEEEEEEE-CCCCCCCCC-CCCCEEEEECCCCCCCC-EEEEEECCCCCHHHHHHHHHHCC T ss_conf 92158799299859997-9995999999-278997545-36420233013445641-38999788788899999887439 Q ss_pred CCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEE Q ss_conf 7527861036715433320022476543441001599998-7996999997 Q gi|254780311|r 98 IKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFV 147 (177) Q Consensus 98 ~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~ 147 (177) . .++++.|..+++.+.++.. +--+++|+ .+|+|.+.++ T Consensus 77 ~-~~p~~~D~~~~~~~~~~v~-----------~~P~~~iid~~G~i~~~~~ 115 (116) T cd02966 77 I-TFPVLLDPDGELAKAYGVR-----------GLPTTFLIDRDGRIRARHV 115 (116) T ss_pred C-CEEEEECCCCHHHHHCCCC-----------CCCEEEEECCCCEEEEEEE T ss_conf 8-3389986985289984998-----------0457999999999999997 No 33 >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Probab=98.44 E-value=2.3e-06 Score=54.30 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=68.9 Q ss_pred CCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCC Q ss_conf 884036888-4023589838974999982288787410010104653112455310110234303540113665223587 Q gi|254780311|r 20 PDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEI 98 (177) Q Consensus 20 Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~~~~ 98 (177) |+|++.+.+ +.+++++ ++||.|||.|. +..-|.|-.+ +|...+..+.+. ...+.+..++.-..+++.+..+. T Consensus 1 P~ftl~~ldG~~~~l~~-~~Gk~vvl~FW-AtWC~pC~~e-~P~l~~l~~~~~----~v~v~~~~~~~~~v~~f~~~~~~ 73 (123) T cd03011 1 PLFTATTLDGEQFDLES-LSGKPVLVYFW-ATWCPVCRFT-SPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGY 73 (123) T ss_pred CCEEEECCCCCEEEHHH-HCCCEEEEEEE-CCCCCCHHHH-CHHHHHHHHHCC----EEEEEEECCCHHHHHHHHHHCCC T ss_conf 96175779989984899-69998999999-3878136563-833888873387----88788603868888877651188 Q ss_pred CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEE Q ss_conf 5278610367154333200224765434410015999987-996999 Q gi|254780311|r 99 KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVES 144 (177) Q Consensus 99 ~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~ 144 (177) .++.+.|.+++.++++++. ++ =+++|++ +|+|.+ T Consensus 74 -~fp~~~D~~~~~~~~y~v~------~~-----Pt~~liD~~GiV~~ 108 (123) T cd03011 74 -GFPVINDPDGVISARWGVS------VT-----PAIVIVDPGGIVFV 108 (123) T ss_pred -CCEEEECCCCCHHHHCCCC------CC-----CEEEEEECCCEEEE T ss_conf -7328988997626547977------16-----77999919998999 No 34 >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. Probab=98.24 E-value=1.2e-05 Score=50.45 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=75.6 Q ss_pred CCCCCC----CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEEC------CCCHHH Q ss_conf 884036----8884023589838974999982288787410010104653112455310110234303------540113 Q gi|254780311|r 20 PDGSKA----FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSV------NDAFVM 89 (177) Q Consensus 20 Pd~tl~----~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~------~d~~~~ 89 (177) |||+-. +.+++++++|+ +||.|||-|. +..-|.|-.+ +|.....++.++..++ .++.+.+ .++-.. T Consensus 1 p~~~~~~~wlN~~~~vsL~~~-kGK~Vll~FW-atwC~pC~~e-~P~l~~l~~~~~~~gv-~vigV~~~~~~~e~~~~~~ 76 (126) T cd03012 1 PEFEGILQWLNTDKPLSLAQL-RGKVVLLDFW-TYCCINCLHT-LPYLTDLEQKYKDDGL-VVIGVHSPEFAFERDLANV 76 (126) T ss_pred CCCCCCCCCCCCCCCCCHHHH-CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCHHHH T ss_conf 988876741269983758994-9998999872-2419378877-2999999997065881-7999844544430259999 Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEECC Q ss_conf 665223587527861036715433320022476543441001599998-799699999748 Q gi|254780311|r 90 NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFVEE 149 (177) Q Consensus 90 ~aw~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~E~ 149 (177) .++.+..+.. ++.+.|..+...++++.. ++ =+++|| .+|+|++.++=| T Consensus 77 ~~~~~~~~i~-~pv~~D~~~~~~~~~~v~------~~-----Pt~~lID~~G~i~~~~~Ge 125 (126) T cd03012 77 KSAVLRYGIT-YPVANDNDYATWRAYGNQ------YW-----PALYLIDPTGNVRHVHFGE 125 (126) T ss_pred HHHHHHHCCC-CEEEECCCHHHHHHCCCC------CC-----CEEEEECCCCCEEEEEECC T ss_conf 9999985997-428985817889857998------23-----8799998998299999578 No 35 >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti Probab=98.17 E-value=2e-05 Score=49.22 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=76.2 Q ss_pred CCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHC--CCEEEEEEC----CCCHHHH Q ss_conf 06884036888-4023589838974999982288787410010104653112455310--110234303----5401136 Q gi|254780311|r 18 VLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG--IEEVYCLSV----NDAFVMN 90 (177) Q Consensus 18 ~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~--~~~i~~~s~----~d~~~~~ 90 (177) .+|+|+|.++. +.++++++ +||+++|+|.---=..+|... +....+..+.+...+ -..++.+|+ |+|-+++ T Consensus 1 ~~p~f~L~d~~G~~~~~~~~-~gk~~lv~F~yt~Cp~~Cp~~-~~~l~~~~~~l~~~~~~~v~~v~ISvDP~rDtpe~L~ 78 (142) T cd02968 1 IGPDFTLTDQDGRPVTLSDL-KGKPVLVYFGYTHCPDVCPTT-LANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142) T ss_pred CCCCEEEECCCCCEEEHHHH-CCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHH T ss_conf 97986999199899827997-998899998746799934899-9999999998644325857999999088889999999 Q ss_pred HHHCCCCCCEEEEEEC---CCHHHHHHHHCCCCCCCC----CCCEEEEEEEEEECCCEEEEEE Q ss_conf 6522358752786103---671543332002247654----3441001599998799699999 Q gi|254780311|r 91 AWGKKLEIKNVKLLPD---GSGEFTRKMGMLVYKDNV----GFGLRSWRYGALIKDMVVESWF 146 (177) Q Consensus 91 aw~~~~~~~~~~~l~D---~~~~~~~~~g~~~~~~~~----g~g~rs~R~a~Ii~dG~I~~~~ 146 (177) +|.+..+ ....+|.- ....+++++|+....... +.-.-+.++++|..+|.|..++ T Consensus 79 ~y~~~~~-~~w~~Ltg~~~~i~~l~~~~gv~~~~~~~~~~~~~~~Hs~~~~lid~~G~i~~~~ 140 (142) T cd02968 79 AYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142) T ss_pred HHHHHHC-CCCEEEECCHHHHHHHHHHCCEEEEECCCCCCCCEEECCCEEEEECCCCCEEEEE T ss_conf 9999736-5846998999999999997695899767888887887303899997998599994 No 36 >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. Probab=98.07 E-value=1.6e-05 Score=49.73 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=70.7 Q ss_pred CCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCC Q ss_conf 88403688-84023589838974999982288787410010104653112455310110234303540113665223587 Q gi|254780311|r 20 PDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEI 98 (177) Q Consensus 20 Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~~~~ 98 (177) |+|+|.+- ++.++++++..||.++| .+=+.+=|.|-.+ +|.....+.... ..-.++.++..+.-.+.++.+..+. T Consensus 1 P~f~l~~ldG~~v~L~~~~~gk~vll-~FwatwCP~Ck~e-mP~l~~~~~~~~--~~~~vv~~sdg~~~~~~~f~~~~~l 76 (114) T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLL-FFLSPTCPVCKKL-LPVIRSIARAEA--DWLDVVLASDGEKAEHQRFLKKHGL 76 (114) T ss_pred CCCEEECCCCCEEEECCCCCCCEEEE-EEECCCCHHHHHH-HHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCC T ss_conf 95374538998698055369984999-9978988678777-778999999717--8679999978997999999997598 Q ss_pred CEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEE Q ss_conf 5278610367154333200224765434410015999987-9969999 Q gi|254780311|r 99 KNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESW 145 (177) Q Consensus 99 ~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~ 145 (177) ..++.+-|. +...+|++. .-=++++|| +|+|.+. T Consensus 77 ~~~p~~~~~--e~~~ay~V~-----------~lP~~~liD~~G~I~~k 111 (114) T cd02967 77 EAFPYVLSA--ELGMAYQVS-----------KLPYAVLLDEAGVIAAK 111 (114) T ss_pred CCCCEEECH--HHHHHCCCC-----------CEEEEEEECCCCEEEEC T ss_conf 778798137--787544455-----------14359999899839955 No 37 >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space. Probab=97.87 E-value=0.00013 Score=44.93 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=90.1 Q ss_pred ECCCCCCCCCCCCC--CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHH Q ss_conf 36706884036888--4023589838974999982288787410010104653112455310110234303540-11366 Q gi|254780311|r 15 VATVLPDGSKAFQW--KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA-FVMNA 91 (177) Q Consensus 15 vGd~~Pd~tl~~~~--~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~-~~~~a 91 (177) ||..+|.+.+.... ....+.|.|...+++|+=|=+.+=|+|-.||.- ..++.+.|--.||.+.=-|. -..=. T Consensus 37 igkpvP~~~~a~L~~~~q~~~~~~~~qG~~~LlNVWAsWCp~CraEHp~-----L~eLak~Grl~ivG~dYKD~~~~Al~ 111 (175) T TIGR00385 37 IGKPVPAFGLAALREPLQLYTADIFRQGKPVLLNVWASWCPPCRAEHPY-----LNELAKEGRLPIVGVDYKDQSQNALK 111 (175) T ss_pred CCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEEECCCCCCHHCCHH-----HHHHHHCCCCEEEEEECCCCCHHHHH T ss_conf 3889885112202467861364453089606998840368883100057-----89997539730788634788457888 Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCEEEEEEE Q ss_conf 52235875278610367154333200224765434410015999987-996999997 Q gi|254780311|r 92 WGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK-DMVVESWFV 147 (177) Q Consensus 92 w~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~-dG~I~~~~~ 147 (177) |-+.+|+.....+.|++|++.-.||+.--.+ +|||+ ||+|.|-+. T Consensus 112 ~LkelGNPy~~~~~D~~G~~glDlGV~GaPE-----------Tflvdg~G~I~YRha 157 (175) T TIGR00385 112 FLKELGNPYQLILADPKGKLGLDLGVYGAPE-----------TFLVDGNGVILYRHA 157 (175) T ss_pred HHHHCCCCEEEEEECCCCCEEEECCCCCCCC-----------CEEECCCCEEEEEEC T ss_conf 8764489066888789984653226688985-----------478679865877743 No 38 >pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus. Probab=97.71 E-value=0.00026 Score=43.24 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=77.0 Q ss_pred CCCCCCCCCCC-EEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCC-CEEEEEECC----CCHHHHHHH Q ss_conf 88403688840-235898389749999822887874100101046531124553101-102343035----401136652 Q gi|254780311|r 20 PDGSKAFQWKD-VNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI-EEVYCLSVN----DAFVMNAWG 93 (177) Q Consensus 20 Pd~tl~~~~~~-~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~-~~i~~~s~~----d~~~~~aw~ 93 (177) =+|+|.+++++ +++.+ ++||++|++|.--.=..+|... +.-.....+.+...+. ..++++|+| .|-+++++. T Consensus 18 g~F~L~dq~G~~~t~~~-l~Gk~~lv~FgfT~CpdiCP~~-~~~l~~~~~~l~~~~~~v~~v~iTvDPerDTpe~L~~Y~ 95 (159) T pfam02630 18 GPFTLIDQNGKNFTSEN-LKGKLSLIYFGFTNCPDICPPA-LDRLTDIIKKLKAENIDVQPVFISVDPERDTPKVLKEYL 95 (159) T ss_pred CCEEEEECCCCEECHHH-HCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH T ss_conf 98289828999976799-5998899999888999645899-999999999853047755999999624889999999999 Q ss_pred CCCCCC--EEEEEECCCHHHHHHHHCCCCCC----CCC--CCEEEEEEEEEECCCEEEEEE Q ss_conf 235875--27861036715433320022476----543--441001599998799699999 Q gi|254780311|r 94 KKLEIK--NVKLLPDGSGEFTRKMGMLVYKD----NVG--FGLRSWRYGALIKDMVVESWF 146 (177) Q Consensus 94 ~~~~~~--~~~~l~D~~~~~~~~~g~~~~~~----~~g--~g~rs~R~a~Ii~dG~I~~~~ 146 (177) +..+.. .+........++++++++..... ..+ .-.-|.++++|..+|.|+.+| T Consensus 96 ~~f~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~y~v~Hs~~~~LiD~~G~i~~~y 156 (159) T pfam02630 96 KNFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDKPEQDYLVDHSSFFYLIDPDGKILKHY 156 (159) T ss_pred HHCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCEEEEECCCCCEEEEC T ss_conf 9729985534899999999999718608964656899885475577799996999897451 No 39 >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the Probab=97.62 E-value=0.00038 Score=42.38 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=64.5 Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCC-EEEEEECCCCH-HHHHHHCCCCC Q ss_conf 84036888402358983897499998228878741001010465311245531011-02343035401-13665223587 Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE-EVYCLSVNDAF-VMNAWGKKLEI 98 (177) Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~-~i~~~s~~d~~-~~~aw~~~~~~ 98 (177) ||.+.++++.++++|+ +||.|+| -+=+-+-|.|-.+ +|...+.++.++..+.+ +|+.++.++.. ....+...... T Consensus 1 ~f~l~~dG~~v~Lsd~-kGK~vll-~FWATWC~PC~~e-~P~L~~ly~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~ 77 (131) T cd03009 1 DFLLRNDGGKVPVSSL-EGKTVGL-YFSASWCPPCRAF-TPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW 77 (131) T ss_pred CEEECCCCCEEEHHHC-CCCEEEE-EEECCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCC T ss_conf 9038899979889994-7988999-9987578666526-58999999998613887799998558777999999985761 Q ss_pred CEEEEEECC-CHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEE Q ss_conf 527861036-715433320022476543441001599998-79969999 Q gi|254780311|r 99 KNVKLLPDG-SGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESW 145 (177) Q Consensus 99 ~~~~~l~D~-~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~ 145 (177) ..+++..+. .....+.+++ ++-=+++|| .+|+|..- T Consensus 78 ~~~p~~~~~~~~~l~~~y~v-----------~giPt~~lId~~G~IV~~ 115 (131) T cd03009 78 LAVPFSDRERRSRLNRTFKI-----------EGIPTLIILDADGEVVTT 115 (131) T ss_pred EEEECCCCCHHHHHHHHCCC-----------CCCCEEEEECCCCCEEHH T ss_conf 10112551067899997698-----------877848999999979817 No 40 >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Probab=97.05 E-value=0.0047 Score=36.48 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=57.2 Q ss_pred CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCC-CEEEEEECCCCHH-HHHHHCCCCCCEEEE Q ss_conf 88840235898389749999822887874100101046531124553101-1023430354011-366522358752786 Q gi|254780311|r 26 FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI-EEVYCLSVNDAFV-MNAWGKKLEIKNVKL 103 (177) Q Consensus 26 ~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~-~~i~~~s~~d~~~-~~aw~~~~~~~~~~~ 103 (177) +..+.++++| |+||.|+|.| =+.+-|.|-.+ +|...+.++.++..+. -+++.++.++... ..++.+.+. ..+.+ T Consensus 5 ~~~~~v~ls~-lkGK~vll~F-WAsWC~pCr~e-~P~L~~ly~~~~~~~~~~~vi~is~D~~~~~~~~~~~~~~-~~~~l 80 (132) T cd02964 5 DGEGVVPVSA-LEGKTVGLYF-SASWCPPCRAF-TPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWLAV 80 (132) T ss_pred CCCCEEEHHH-HCCCEEEEEE-ECCCCHHHHHH-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCC-CCEEE T ss_conf 6998988999-0898899999-84568204310-5899999999874188689999767899999999999649-85034 Q ss_pred E-ECC--CHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEE Q ss_conf 1-036--715433320022476543441001599998-799699999 Q gi|254780311|r 104 L-PDG--SGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWF 146 (177) Q Consensus 104 l-~D~--~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~ 146 (177) . .|. ...+++.+++. |+ =+++|| .+|+|..-. T Consensus 81 p~~~~~~~~~l~~~y~V~------gi-----Pt~~lid~~Gkiv~~~ 116 (132) T cd02964 81 PFEDEELRELLEKQFKVE------GI-----PTLVVLKPDGDVVTTN 116 (132) T ss_pred ECCCHHHHHHHHHHCCCC------CC-----CEEEEECCCCCEECHH T ss_conf 136778889999973888------89-----8789998999897032 No 41 >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process. Probab=96.97 E-value=0.004 Score=36.87 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=86.2 Q ss_pred ECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH Q ss_conf 36706884036888-40235898389749999822887874100101046531124553101102343035401136652 Q gi|254780311|r 15 VATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWG 93 (177) Q Consensus 15 vGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~ 93 (177) |||.+|.|++++-+ ..|..----..++--|.-+-+.--|+|.+ .+|-...-... ... .|+.+|.=.+--++++- T Consensus 48 vG~~aP~F~l~~f~G~~V~iG~~~a~~R~~LLMFTaPsCPvC~K-L~PiIkSia~~---E~~-~Vv~ISDG~~~EHr~FL 122 (189) T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIALGRPTLLMFTAPSCPVCDK-LLPIIKSIARA---EEI-DVVLISDGTPEEHRRFL 122 (189) T ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHHH---HCC-CEEEEECCCCHHHHHHH T ss_conf 45558710576667864561175567775035443888853224-32789888867---253-25897279927999886 Q ss_pred CCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 23587527861036715433320022476543441001599998799699999748877787777732489999999998 Q gi|254780311|r 94 KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIR 173 (177) Q Consensus 94 ~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL~~Lk 173 (177) +++...+..+.- +...|+.+...+.-+| +++..+|+|.-.- -.|++ -|.|+.|+..| T Consensus 123 ~~H~L~~~~YVV------SAE~GM~fQV~KiPYG------VLLD~~G~I~AKG----L~NTR-------EHlESLlEa~r 179 (189) T TIGR02661 123 KDHELGEERYVV------SAEIGMAFQVGKIPYG------VLLDQDGVIRAKG----LTNTR-------EHLESLLEADR 179 (189) T ss_pred HCCCCCCEEEEE------EECCCCCCCCCCCCCE------EEECCCCEEEECC----CCCHH-------HHHHHHHHHCC T ss_conf 428888713788------6202210011225622------5667997477426----76438-------88999886200 Q ss_pred H Q ss_conf 6 Q gi|254780311|r 174 E 174 (177) Q Consensus 174 ~ 174 (177) + T Consensus 180 ~ 180 (189) T TIGR02661 180 E 180 (189) T ss_pred C T ss_conf 3 No 42 >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] Probab=96.94 E-value=0.015 Score=33.83 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=80.4 Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHH-HHCCCE-EEEEECC----CCHHHHHHHC Q ss_conf 840368884023589838974999982288787410010104653112455-310110-2343035----4011366522 Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLR-CEGIEE-VYCLSVN----DAFVMNAWGK 94 (177) Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~-~~~~~~-i~~~s~~----d~~~~~aw~~ 94 (177) +|+|-+++++....+.++||.++++|-=--=.-+|... +.......+.+. ..+.+. ++.+++| .|-+++++.. T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207) T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207) T ss_pred CEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHC T ss_conf 65788689988612356798899997556789747579-99999999973643478489999987999998999999732 Q ss_pred -CCCC--CEEEEEECCCHHHHHHHHCCC---CCCCCCCCEEEE-EEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH Q ss_conf -3587--527861036715433320022---476543441001-5999987-9969999974887778777773248999 Q gi|254780311|r 95 -KLEI--KNVKLLPDGSGEFTRKMGMLV---YKDNVGFGLRSW-RYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177) Q Consensus 95 -~~~~--~~~~~l~D~~~~~~~~~g~~~---~~~~~g~g~rs~-R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177) .-.. ..+.-..+...+..+++++.. ...+..-....+ -.+++++ +|.+...+.-. ..++ T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~-------------~~~~ 194 (207) T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG-------------EPPE 194 (207) T ss_pred CCCCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEECCC-------------CCHH T ss_conf 168888626508988999999961614565124777762241440699988998299984589-------------9869 Q ss_pred HHHHHHHHH Q ss_conf 999999861 Q gi|254780311|r 167 NVLKVIRES 175 (177) Q Consensus 167 ~iL~~Lk~~ 175 (177) .+++.|+.. T Consensus 195 ~i~~~l~~l 203 (207) T COG1999 195 EIAADLKKL 203 (207) T ss_pred HHHHHHHHH T ss_conf 999999998 No 43 >pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function. Probab=95.39 E-value=0.2 Score=27.78 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=72.3 Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEE----ECCCCCCCCCHHHCHHHHHHH----HHHHHHCCCEEEEEECCCCHHH-HH Q ss_conf 84036888402358983897499998----228878741001010465311----2455310110234303540113-66 Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFA----LPGAFTPTCSDHQLPGFEKIY----DDLRCEGIEEVYCLSVNDAFVM-NA 91 (177) Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~----~P~AfTp~Ct~~~~~~~~~~~----~~~~~~~~~~i~~~s~~d~~~~-~a 91 (177) +..+-...++++++|+|.|+.-+|+- -|+. .-+|.. |.+...+. .-+... |.-+.+++..|... .+ T Consensus 48 ~Y~F~gp~G~v~L~dLF~GR~qLivYhfMf~P~~-~~~C~g--CS~~~D~~~g~l~hL~~r--d~t~a~vsraP~~~l~~ 122 (211) T pfam05988 48 DYRFDGPDGPVTLADLFGGRSQLIVYHFMFGPGW-EAGCPG--CSFLADHFDGALAHLAAR--DVALAAVSRAPLAELVA 122 (211) T ss_pred CEEEECCCCCEEHHHHHCCCCEEEEEEEECCCCC-CCCCCC--CHHHHHCCCCHHHHHHHC--CCEEEEEECCCHHHHHH T ss_conf 7587689985328998099742899997027898-899997--222452756137788727--83699993798999999 Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECC Q ss_conf 5223587527861036715433320022476543441001599998799699999748 Q gi|254780311|r 92 WGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEE 149 (177) Q Consensus 92 w~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~ 149 (177) +++.+|=. ++..|.....|...++......+..-|. .+|+-++|.|-+-|--. T Consensus 123 ~k~rmGW~-~pw~Ss~~s~Fn~D~~v~~~~~~e~pg~----svF~rd~g~Vfhtyst~ 175 (211) T pfam05988 123 YKRRMGWT-FPWYSSVGSDFNRDFGVSFTEEGERPGL----SVFLRDGGRVFHTYSTY 175 (211) T ss_pred HHHHCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCE----EEEEECCCEEEEEECCC T ss_conf 99975997-1478658976653147521787877615----89997699899965258 No 44 >PTZ00256 glutathione peroxidase; Provisional Probab=93.98 E-value=0.46 Score=25.80 Aligned_cols=142 Identities=12% Similarity=0.195 Sum_probs=71.9 Q ss_pred CCCCCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCH-------- Q ss_conf 70688403688-840235898389749999822887874100101046531124553101102343035401-------- Q gi|254780311|r 17 TVLPDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAF-------- 87 (177) Q Consensus 17 d~~Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~-------- 87 (177) ..+=||++.+- ++.++++++ +||+|+|+ +--|.-=+-|.+|.....+.++.++..|. +|+..-.|+.- T Consensus 18 ks~ydf~~~~i~G~~~~L~~y-~Gk~vliv-VNvAS~CG~T~q~Y~~L~~L~~~y~~~Gl-~IL~FPcNqF~~QEpg~~~ 94 (183) T PTZ00256 18 KSFFDFELNDIDGQKTQLSKF-QGKKAYIC-VNVACSCGLTSSNYSELVELYKQYSAQGL-EILGFPCNQFMNQESKPEP 94 (183) T ss_pred CCEEEEEEECCCCCEEEHHHC-CCCEEEEE-EEECCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCHH T ss_conf 655621644599899528995-99879999-98156778983618999999999850898-8998666442556999889 Q ss_pred HHHHHHCCCCCCEEEEEE--CCCHHHHHH-HHCCCCCC------CCCCCEEEEEE-EEEE-CCCEEEEEEECCCCCCCCC Q ss_conf 136652235875278610--367154333-20022476------54344100159-9998-7996999997488777877 Q gi|254780311|r 88 VMNAWGKKLEIKNVKLLP--DGSGEFTRK-MGMLVYKD------NVGFGLRSWRY-GALI-KDMVVESWFVEEGFSDNCA 156 (177) Q Consensus 88 ~~~aw~~~~~~~~~~~l~--D~~~~~~~~-~g~~~~~~------~~g~g~rs~R~-a~Ii-~dG~I~~~~~E~~~~~~~~ 156 (177) -...+........+++.. +-+|.-+.- |..+.... ....+...|-| =++| .||.+.+.|-- T Consensus 95 eI~~f~~~~ygv~Fp~f~Ki~VnG~~~hPly~~LK~~~~~~~~~~~~~~~I~WNF~KFLId~~G~vv~rf~p-------- 166 (183) T PTZ00256 95 EIKEFVIQKYGVSFPLFQKIEVNGQNTHEIYRYLRLNSELLKVNKNEAKEVPWNFGKFLLDSQGNVVNFYCP-------- 166 (183) T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECC-------- T ss_conf 999999857898536667673579987868999985365555675679977866577999999829989798-------- Q ss_pred CCCCCCCCHHHHHHHHHH Q ss_conf 777324899999999986 Q gi|254780311|r 157 TDPYEISSPENVLKVIRE 174 (177) Q Consensus 157 ~d~~~vs~ae~iL~~Lk~ 174 (177) .++++++.+.|++ T Consensus 167 -----~t~P~~l~~~Ie~ 179 (183) T PTZ00256 167 -----DQKPNEMMQDIEK 179 (183) T ss_pred -----CCCHHHHHHHHHH T ss_conf -----9999999999999 No 45 >KOG2792 consensus Probab=93.57 E-value=0.21 Score=27.56 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=65.2 Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHH-HHHCCCEE-EEEECCC----CHHHHHHHC Q ss_conf 84036888402358983897499998228878741001010465311245-53101102-3430354----011366522 Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL-RCEGIEEV-YCLSVND----AFVMNAWGK 94 (177) Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~-~~~~~~~i-~~~s~~d----~~~~~aw~~ 94 (177) .|+|.+..++..+...|.|||++|||==-----+|..|. .--....+.+ ...++..+ +.|++|. +.+++..-+ T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdEL-eKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280) T KOG2792 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDEL-EKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280) T ss_pred CEEEEECCCCEECCCCCCCCEEEEEECCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 647772589761030234516999952568997696999-9999999998525899862259984766487999999998 Q ss_pred CCCC--CEEEEEECCCHHHHHHHHCCCCCCC-----CCCCEEEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH Q ss_conf 3587--5278610367154333200224765-----434410015999987-9969999974887778777773248999 Q gi|254780311|r 95 KLEI--KNVKLLPDGSGEFTRKMGMLVYKDN-----VGFGLRSWRYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177) Q Consensus 95 ~~~~--~~~~~l~D~~~~~~~~~g~~~~~~~-----~g~g~rs~R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177) .... .++.=-.+.....+++|-+-+.... ..+=.-| -+.++++ +|....++ +.|.+.+ +-++ T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHS-i~mYLidPeg~Fvd~~-----GrN~~~~----~~~~ 269 (280) T KOG2792 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHS-IFMYLIDPEGEFVDYY-----GRNYDAD----ELAD 269 (280) T ss_pred HCCHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCCCCEEEEEE-EEEEEECCCCCEEHHH-----CCCCCHH----HHHH T ss_conf 5086650566889999999988078614689877888565415-8999988986300653-----4668888----9999 Q ss_pred HHHHHHHHHC Q ss_conf 9999998616 Q gi|254780311|r 167 NVLKVIRESK 176 (177) Q Consensus 167 ~iL~~Lk~~~ 176 (177) .|++++++.+ T Consensus 270 ~I~~~v~~y~ 279 (280) T KOG2792 270 SILKHVASYR 279 (280) T ss_pred HHHHHHHHCC T ss_conf 9999988316 No 46 >pfam09695 YtfJ_HI0045 Bacterial protein of unknown function (YtfJ_HI0045). These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. Probab=87.10 E-value=2.3 Score=21.98 Aligned_cols=145 Identities=15% Similarity=0.193 Sum_probs=73.9 Q ss_pred CCCEEEE--EEECCCCCCCCCCCC------C-----CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHH-HH Q ss_conf 8815999--953670688403688------8-----40235898389749999822887874100101046531124-55 Q gi|254780311|r 6 IPQVVFH--MRVATVLPDGSKAFQ------W-----KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDD-LR 71 (177) Q Consensus 6 ip~~~~~--ikvGd~~Pd~tl~~~------~-----~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~-~~ 71 (177) +|...|. +++|+..|.-++.+. . +.=++.. +.| ||-++.|-++-++.-... -|..+....+ |. T Consensus 6 ~p~~a~Ahn~~~g~~~P~V~v~d~GEl~l~~~~~~y~~W~S~~-L~G-KVrviq~iAGr~sakelN-~~l~~Aikaa~fp 82 (174) T pfam09695 6 LPTLAFAHNLQLGQPVPPVTVADKGELVLNGDKFSYQPWSSAQ-LAG-KVRVIQHIAGRSSAKELN-APLIEAIKAAKFP 82 (174) T ss_pred CCHHHHHCCCCCCCCCCCEEECCCCEEEECCCCEEEEECCHHH-CCC-CEEEEEEECCCCCHHHHH-HHHHHHHHHHCCC T ss_conf 3077764015358928955855785598738946221247021-588-689999833688667773-8999999970798 Q ss_pred HHCCCEEEEEECCC------CHHHHHH-HCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE--CCCEE Q ss_conf 31011023430354------0113665-223587527861036715433320022476543441001599998--79969 Q gi|254780311|r 72 CEGIEEVYCLSVND------AFVMNAW-GKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI--KDMVV 142 (177) Q Consensus 72 ~~~~~~i~~~s~~d------~~~~~aw-~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii--~dG~I 142 (177) ..--..+-++-.+| +|+...- ..+.....-.+.-|.+|...++|++.-+. .++|| .+|+| T Consensus 83 ~~~YqtttIIN~ddAiwgtg~fV~ss~e~~Kk~fP~S~~VlD~~G~v~~aW~L~~~s-----------SaIiVlDk~G~V 151 (174) T pfam09695 83 RDKYQTTTIINLDDAIWGTGSFVKSSAEDSKKEFPWSQFVLDSNGVVQKAWDLQEES-----------SAIIVLDKQGKV 151 (174) T ss_pred HHHCCEEEEEECCCCEECCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCC-----------CEEEEECCCCCE T ss_conf 100420789836765322448875567651331887269991787153402689778-----------659999588878 Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99997488777877777324899999999986 Q gi|254780311|r 143 ESWFVEEGFSDNCATDPYEISSPENVLKVIRE 174 (177) Q Consensus 143 ~~~~~E~~~~~~~~~d~~~vs~ae~iL~~Lk~ 174 (177) .+.. + |..+-...+.++..|++ T Consensus 152 ~f~k--d--------G~Lt~~ev~~vi~li~~ 173 (174) T pfam09695 152 LFVK--E--------GALTPAEIQQVIGLIKK 173 (174) T ss_pred EEEE--C--------CCCCHHHHHHHHHHHHH T ss_conf 9987--6--------88999999999999862 No 47 >KOG4498 consensus Probab=84.80 E-value=3.1 Score=21.32 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=82.6 Q ss_pred CCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEE Q ss_conf 88840235898389749999822887874100101046531124553101102343035401136652235875278610 Q gi|254780311|r 26 FQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLP 105 (177) Q Consensus 26 ~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~~~~~~~~~~~l~ 105 (177) .....+...++|+....++.|+---=--.|-.+ -..+-.+.+.+++.|+..|.+... ...-....+++.+... .... T Consensus 37 ~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~-aadLa~l~~~ld~~Gv~Li~vg~g-~~~~~~~f~~q~~f~g-evyl 113 (197) T KOG4498 37 SRGESVPVTSLFKERSAVVAFVRRPGCVLCREE-AADLASLKDLLDELGVVLIAVGPG-SHVQFEDFWDQTYFSG-EVYL 113 (197) T ss_pred HCCCEEEHHHHHHCCCEEEEEECCCCEEEEHHH-HHHHHHHHHHHHHHCCEEEEEECC-CEEECCHHHCCCCCCE-EEEE T ss_conf 057542368866407718998525768772788-887887888998739779998044-1021020111467632-4898 Q ss_pred CCCHHHHHHHHCCCCC-CCC--------------CCC------EEEEEEEEEECC-CEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 3671543332002247-654--------------344------100159999879-969999974887778777773248 Q gi|254780311|r 106 DGSGEFTRKMGMLVYK-DNV--------------GFG------LRSWRYGALIKD-MVVESWFVEEGFSDNCATDPYEIS 163 (177) Q Consensus 106 D~~~~~~~~~g~~~~~-~~~--------------g~g------~rs~R~a~Ii~d-G~I~~~~~E~~~~~~~~~d~~~vs 163 (177) |++..+++.+++.... ... |++ .+..+-.++|.. +.|-.+++|+..+|+. T Consensus 114 D~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~-------- 185 (197) T KOG4498 114 DPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHV-------- 185 (197) T ss_pred CCCCCEECHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCEEEEECCCEEEEEEECCCCCCCC-------- T ss_conf 576550203454301233335553788888864355777554757748839995598079998137878776-------- Q ss_pred CHHHHHHHHH Q ss_conf 9999999998 Q gi|254780311|r 164 SPENVLKVIR 173 (177) Q Consensus 164 ~ae~iL~~Lk 173 (177) +.++||+.+. T Consensus 186 ~i~~Vl~v~~ 195 (197) T KOG4498 186 PIDSVLQVVG 195 (197) T ss_pred CHHHHHHHHH T ss_conf 8999999861 No 48 >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. Probab=75.14 E-value=6.7 Score=19.51 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=62.5 Q ss_pred CCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHH Q ss_conf 88403688-840235898389749999822887874100101046531124553101102343035401--------136 Q gi|254780311|r 20 PDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAF--------VMN 90 (177) Q Consensus 20 Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~--------~~~ 90 (177) -||++.+- .+.++++++ +||-|+++-+ |.--+. +.|.....+.++.++.+|. .|+..-.|+.- ... T Consensus 3 yd~~~~~idG~~~~l~~y-~GkvvLiVNv--AS~Cg~-t~qy~~L~~L~~ky~~~gl-~Il~fPcnqFg~QEp~~~~eI~ 77 (152) T cd00340 3 YDFSVKDIDGEPVSLSKY-KGKVLLIVNV--ASKCGF-TPQYEGLEALYEKYKDRGL-VVLGFPCNQFGGQEPGSNEEIK 77 (152) T ss_pred CCEEEECCCCCEECHHHC-CCCEEEEEEC--CCCCCC-CCCHHHHHHHHHHHCCCCE-EEEEEEHHHHHCCCCCCHHHHH T ss_conf 113766799899458993-9978999966--778888-7248899999998412884-9996366886134999789999 Q ss_pred HHHCCCCCCEEEEEE--CCCHHHHH-HHHCCCCCCCCCC-CEEEEEE-EEEE-CCCEEEEEEE Q ss_conf 652235875278610--36715433-3200224765434-4100159-9998-7996999997 Q gi|254780311|r 91 AWGKKLEIKNVKLLP--DGSGEFTR-KMGMLVYKDNVGF-GLRSWRY-GALI-KDMVVESWFV 147 (177) Q Consensus 91 aw~~~~~~~~~~~l~--D~~~~~~~-~~g~~~~~~~~g~-g~rs~R~-a~Ii-~dG~I~~~~~ 147 (177) .+.+......+++.. +-+|.-+. .+..+........ +.-.|-| =++| .+|.+.+-|- T Consensus 78 ~f~~~~y~v~Fpv~~K~~VnG~~~hply~~Lk~~~~~~~~~~i~WNF~KfLid~~G~vv~rf~ 140 (152) T cd00340 78 EFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152) T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEC T ss_conf 999970687622276650679876889999997579887898762138999989998998879 No 49 >pfam00837 T4_deiodinase Iodothyronine deiodinase. Iodothyronine deiodinase converts thyroxine (T4) to 3,5,3'-triiodothyronine (T3). Probab=49.08 E-value=22 Score=16.74 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=67.0 Q ss_pred EEECCCCCCCCCCCC-C-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHH-----CCCEEEEEECCC Q ss_conf 953670688403688-8-402358983897499998228878741001010465311245531-----011023430354 Q gi|254780311|r 13 MRVATVLPDGSKAFQ-W-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE-----GIEEVYCLSVND 85 (177) Q Consensus 13 ikvGd~~Pd~tl~~~-~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~-----~~~~i~~~s~~d 85 (177) .++|..|||-.+..- + ...++.|+.+|++=++.-+ .-|| ||.|....+.|+.. .+.....+=... T Consensus 73 a~~G~~APns~vV~l~g~~~~~ildf~~g~RPLVlnF-----GScT---CPpFm~~l~~F~rlv~~f~dvADFl~VYIeE 144 (237) T pfam00837 73 AHLGGLAPNSEVVRLSGQRGCHILDFAQGNRPLVLNF-----GSCT---UPPFMARLDAFQRLVEDFCSTADFLIIYIEE 144 (237) T ss_pred HHCCCCCCCCCEEEECCCCCEEHHHHHCCCCCEEEEC-----CCCC---CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEC T ss_conf 7457889999638545743000666605898758862-----6767---8558888999999999976033446665311 Q ss_pred CHHHHHHHCCCCC---CEEEEEECCCHHHHHHHH-------CCCCC----CCCCCCEEEEEEEEEECCCEEEEEEECCCC Q ss_conf 0113665223587---527861036715433320-------02247----654344100159999879969999974887 Q gi|254780311|r 86 AFVMNAWGKKLEI---KNVKLLPDGSGEFTRKMG-------MLVYK----DNVGFGLRSWRYGALIKDMVVESWFVEEGF 151 (177) Q Consensus 86 ~~~~~aw~~~~~~---~~~~~l~D~~~~~~~~~g-------~~~~~----~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~ 151 (177) .+....|.-..+. ...+-+.|-- +.++.+. +..|. .+.-+|.-.-| .+|+.+|+|.|.- T Consensus 145 AHpsDGW~~~~n~~~I~~Hr~ledRl-~AA~~l~~~~p~cpvvvDtMdN~an~aYgA~peR-LYIiq~gkV~Y~G----- 217 (237) T pfam00837 145 AHPSDGWAFTDNSYNIPTHQTLQDRL-QAARLLLQRAPGCRVVADTMRNQSSQAYGAYFER-LYVIQEGKILYQG----- 217 (237) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCE-EEEEECCEEEECC----- T ss_conf 36777610169843257767879999-9999999509999889861467667873667344-8999748799727----- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 77877777324899999999986 Q gi|254780311|r 152 SDNCATDPYEISSPENVLKVIRE 174 (177) Q Consensus 152 ~~~~~~d~~~vs~ae~iL~~Lk~ 174 (177) ..||..- ..+++-+.|++ T Consensus 218 ----g~GP~~Y-~~~Evr~wLek 235 (237) T pfam00837 218 ----GRGPWGY-HPEEVRAWLEK 235 (237) T ss_pred ----CCCCCCC-CHHHHHHHHHH T ss_conf ----8898878-98999999997 No 50 >pfam08747 DUF1788 Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids. Probab=39.69 E-value=24 Score=16.51 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=25.7 Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCC Q ss_conf 1599995367068840368884023589838974999982288787 Q gi|254780311|r 8 QVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTP 53 (177) Q Consensus 8 ~~~~~ikvGd~~Pd~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp 53 (177) ++.+-.-||...|=.-.-.-.+ .++..++.+++|+ ||||.++. T Consensus 62 dvvfltGvG~vyP~iR~h~lLn--~L~~~~~~~P~v~-FyPG~y~g 104 (125) T pfam08747 62 DIVFLTGVGEVYPLIRSHNLLN--NLHSVMGDVPLVM-FYPGEYDG 104 (125) T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHHHCCCCEEE-ECCCCCCC T ss_conf 4899937742150686899999--8888754881899-75874268 No 51 >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. . Probab=39.26 E-value=32 Score=15.88 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=73.9 Q ss_pred EEECCCCCCC--------CCCC---CCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHH-------- Q ss_conf 9536706884--------0368---88402358983897499998228878741001010465311245531-------- Q gi|254780311|r 13 MRVATVLPDG--------SKAF---QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE-------- 73 (177) Q Consensus 13 ikvGd~~Pd~--------tl~~---~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~-------- 73 (177) ++|++.+|-- +|.+ .+++=.+.++.+.=||| --+-|= +.+.|.=...++-.+.-+.. T Consensus 23 L~v~q~vP~Vgv~~~GEivL~~~~~~yq~W~SA~LaGKVRV~-~hiAGR---tsaKE~Na~li~aIkaakfp~~~YQTTT 98 (184) T TIGR01626 23 LEVEQSVPAVGVEERGEIVLSDDDISYQKWRSAELAGKVRVV-LHIAGR---TSAKEKNASLIEAIKAAKFPAEKYQTTT 98 (184) T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHCC---CHHHHCCCCHHHHHHHHCCCCCCCCCCE T ss_conf 124885897111354016752784001587415564157765-654155---1001137618999986337876775211 Q ss_pred ---CCCEEEEEECCCCHHHHHHHCC-CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC--CCEEEEEEE Q ss_conf ---0110234303540113665223-5875278610367154333200224765434410015999987--996999997 Q gi|254780311|r 74 ---GIEEVYCLSVNDAFVMNAWGKK-LEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIK--DMVVESWFV 147 (177) Q Consensus 74 ---~~~~i~~~s~~d~~~~~aw~~~-~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~--dG~I~~~~~ 147 (177) ..|.|... ..||...-.+. ..+..=.++-|..|....+|++--. ..|+||- +|+|. |+ T Consensus 99 IiN~DDAI~Gt---gmFVkssa~~~Kke~PwSq~vlD~~g~v~nAWqL~~e-----------~SAiIVlDK~G~V~--fV 162 (184) T TIGR01626 99 IINADDAIVGT---GMFVKSSAKKSKKEYPWSQVVLDEKGVVKNAWQLKEE-----------DSAIIVLDKDGKVK--FV 162 (184) T ss_pred EEECCCCEECC---CHHEECCHHCCCCCCCEEEEEECCHHHHHHHHCCCCC-----------CCEEEEECCCCCEE--EE T ss_conf 45068850068---5010100210772378011788654688754214556-----------86588972777355--77 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 4887778777773248999999999861 Q gi|254780311|r 148 EEGFSDNCATDPYEISSPENVLKVIRES 175 (177) Q Consensus 148 E~~~~~~~~~d~~~vs~ae~iL~~Lk~~ 175 (177) .|| ..+-++..+|+..|++. T Consensus 163 KeG--------aL~~~diQtV~~L~~~l 182 (184) T TIGR01626 163 KEG--------ALSEADIQTVVDLVQKL 182 (184) T ss_pred ECC--------CCCHHHHHHHHHHHHHH T ss_conf 557--------66813577899999763 No 52 >pfam07830 PP2C_C Protein serine/threonine phosphatase 2C, C-terminal domain. Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain. Probab=38.51 E-value=17 Score=17.32 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=20.2 Q ss_pred EEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEE Q ss_conf 99998228878741001010465311245531011023 Q gi|254780311|r 42 VFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVY 79 (177) Q Consensus 42 VvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~ 79 (177) +||+.+||| |.=+.+++.--.+....+.... .+++ T Consensus 2 iILv~fpgA--Pkv~~EAv~kE~eLd~~le~~v-~Eii 36 (81) T pfam07830 2 IILICFPGA--PKVSEEAVKKEAELDKYLEQRV-EEII 36 (81) T ss_pred EEEEECCCC--CCCCHHHHHHHHHHHHHHHHHH-HHHH T ss_conf 788855998--9999999999999999999999-9999 No 53 >pfam01123 Stap_Strp_toxin Staphylococcal/Streptococcal toxin, OB-fold domain. Probab=37.76 E-value=22 Score=16.75 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.3 Q ss_pred CCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCC Q ss_conf 036888402358983897499998228878741 Q gi|254780311|r 23 SKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTC 55 (177) Q Consensus 23 tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~C 55 (177) .+..+.....+++.|+||+|=||++|--++.-+ T Consensus 38 ~l~~ef~~~~~a~~fKgkkVDIfg~~Y~~~c~~ 70 (86) T pfam01123 38 DLKVEFDSKDLAKFFKGKKVDIFGLSYYYNCYG 70 (86) T ss_pred HHHHHHCCHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 552012779888862797467974420330325 No 54 >pfam05176 ATP-synt_10 ATP10 protein. ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex. Probab=37.71 E-value=34 Score=15.74 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=51.1 Q ss_pred CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHH---HHHHHHHHC-CCEEEEEECCCCHHHHHHHCCC--CCCEEE Q ss_conf 4023589838974999982288787410010104653---112455310-1102343035401136652235--875278 Q gi|254780311|r 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEK---IYDDLRCEG-IEEVYCLSVNDAFVMNAWGKKL--EIKNVK 102 (177) Q Consensus 29 ~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~---~~~~~~~~~-~~~i~~~s~~d~~~~~aw~~~~--~~~~~~ 102 (177) ...++.+.+.||--|+--+-.++.-.| +..|.. ..+.++... ..+++=+..-+.+. ++|--.. +...-. T Consensus 114 ~~~~tt~~l~GKvSvV~lfSs~~gE~~----~~sf~~n~~l~~~l~~~~~~~Q~v~IN~~en~l-K~~lvklf~~~lr~~ 188 (255) T pfam05176 114 PPQNTTDLLRGKVSVVRLFSSAWGEKQ----ARSYFKNPFLKDYLKEDYGDAQIVEINVEENWL-KAWLVKLFMGNLRKK 188 (255) T ss_pred CCCCCCHHHCCCEEEEEEEHHHHHHHH----HHHHHCCCCHHHHHHCCCCCCEEEEEECCHHHH-HHHHHHHHHHHHHHH T ss_conf 876640221696689998510778999----887615962889972578872399984507899-999999987666632 Q ss_pred EEECCCHHHHHH-HHCCCC--CCCCCCCEEEEEEEEEEC-CCEEEEEE Q ss_conf 610367154333-200224--765434410015999987-99699999 Q gi|254780311|r 103 LLPDGSGEFTRK-MGMLVY--KDNVGFGLRSWRYGALIK-DMVVESWF 146 (177) Q Consensus 103 ~l~D~~~~~~~~-~g~~~~--~~~~g~g~rs~R~a~Ii~-dG~I~~~~ 146 (177) +...-....+-. .+...+ .+..|+.+..--|+++|| +|+|++.- T Consensus 189 vP~~~~~~Yf~~~~~~~~~~iRe~lg~~N~~vGYvyLvD~~~rIRWag 236 (255) T pfam05176 189 VPEERHERYFIVRKGQLPFDIRESLGILNSLVGYVYLVDHNCRIRWAG 236 (255) T ss_pred CCHHHCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEC T ss_conf 899773806998788788779987576431035899987987187410 No 55 >PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Probab=32.03 E-value=41 Score=15.25 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=11.3 Q ss_pred CCCCCCCCCH-HHHHHHHH Q ss_conf 7777324899-99999998 Q gi|254780311|r 156 ATDPYEISSP-ENVLKVIR 173 (177) Q Consensus 156 ~~d~~~vs~a-e~iL~~Lk 173 (177) ...++++|.| |++++.|- T Consensus 253 a~eV~DVTGAGDTfiAala 271 (473) T PRK11316 253 AREVYDVTGAGDTVISVLA 271 (473) T ss_pred CCCCCCCCCCHHHHHHHHH T ss_conf 8988888682299999999 No 56 >cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei Probab=30.61 E-value=44 Score=15.09 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=29.7 Q ss_pred CCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH Q ss_conf 974999982288787410010104653112455310110234303540113665 Q gi|254780311|r 39 GKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92 (177) Q Consensus 39 gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw 92 (177) -..|+|+-+||+-|+.|..+ .|.+ ..+....|.++++++.-.-....| T Consensus 51 ~pnv~lwDlPG~Gt~~f~~~---~Yl~---~~~~~~yD~fiiiss~rf~~nd~~ 98 (197) T cd04104 51 FPNVTLWDLPGIGSTAFPPD---DYLE---EMKFSEYDFFIIISSTRFSSNDVK 98 (197) T ss_pred CCCCEEECCCCCCCCCCCHH---HHHH---HCCCCCCCEEEEEECCCCCHHHHH T ss_conf 99876972899998765989---9998---658554578999838864142699 No 57 >PRK10606 btuE putative glutathione peroxidase; Provisional Probab=28.90 E-value=48 Score=14.92 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=45.6 Q ss_pred CCCCCCCCCCC-CCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHH------- Q ss_conf 70688403688-8402358983897499998228878741001010465311245531011023430354011------- Q gi|254780311|r 17 TVLPDGSKAFQ-WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV------- 88 (177) Q Consensus 17 d~~Pd~tl~~~-~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~------- 88 (177) +.+=||++.+- ++.++++++ +||-|+++=+-- -=+.|. +.....+.++.++..|. +|+..-.|+..- T Consensus 3 ~siydf~~~~idG~~~~l~~y-~GKvvLIVNvAS--~CG~T~-qY~~L~~L~~~y~~~Gl-~ILgFPcNqF~~QEp~~~~ 77 (183) T PRK10606 3 DSILTTVVTTIDGEVTTLEKY-AGNVLLIVNVAS--KCGLTP-QYEQLENIQKAWADQGF-VVLGFPCNQFLGQEPGSDE 77 (183) T ss_pred CCEECEEEECCCCCEECHHHC-CCCEEEEEECCC--CCCCCH-HHHHHHHHHHHHHCCCE-EEEEEEHHHHHHCCCCCHH T ss_conf 751220777689989348993-996899997775--578807-79999999998411883-8997420666651999889 Q ss_pred -HHHHHCCCCCCEEEEEE Q ss_conf -36652235875278610 Q gi|254780311|r 89 -MNAWGKKLEIKNVKLLP 105 (177) Q Consensus 89 -~~aw~~~~~~~~~~~l~ 105 (177) ...+++....-.+++.+ T Consensus 78 eI~~fc~~~ygv~Fp~f~ 95 (183) T PRK10606 78 EIKTYCRTTWGVTFPMFS 95 (183) T ss_pred HHHHHHHHCCCCCCEEEE T ss_conf 999999867998510167 No 58 >pfam08468 MTS_N Methyltransferase small domain N-terminal. This domain is found to the N-terminus of the methyltransferase small domain (pfam05175) in bacterial proteins. Probab=28.45 E-value=37 Score=15.50 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.3 Q ss_pred EEHHHHHCCCEEEEEEECCCCCC Q ss_conf 23589838974999982288787 Q gi|254780311|r 31 VNTQDLFAGKRVFLFALPGAFTP 53 (177) Q Consensus 31 ~~~~d~f~gKkVvL~~~P~AfTp 53 (177) .+-.++|.||.|++.+.|.+--| T Consensus 5 lR~~~~f~gk~VL~ag~~~D~l~ 27 (155) T pfam08468 5 LRHLELFEGKHVLFAGEIADDLP 27 (155) T ss_pred HHHHHHHCCCCEEEECCCCCHHH T ss_conf 11399878980899538640258 No 59 >KOG4044 consensus Probab=27.34 E-value=30 Score=15.98 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=27.9 Q ss_pred CCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 88402358983897499998228878741001010465311245531011023430 Q gi|254780311|r 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLS 82 (177) Q Consensus 27 ~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s 82 (177) +...-++.++|.+|.|||||+- |-+|-.+ -.+ .+-+.|++.-++.+ T Consensus 91 p~v~~s~~~i~~~k~VvL~GiE---thvCv~q------Ta~-dLl~rgl~VhvVaD 136 (201) T KOG4044 91 PPVEDSLKDIFGGKTVVLFGIE---THVCVLQ------TAL-DLLERGLNVHVVAD 136 (201) T ss_pred CHHHHHHHHCCCCCEEEEEECC---HHEEHHH------HHH-HHHHCCCEEEEEEE T ss_conf 2678888753599749998310---0000488------799-99867964999854 No 60 >cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Probab=27.11 E-value=52 Score=14.74 Aligned_cols=43 Identities=33% Similarity=0.288 Sum_probs=24.4 Q ss_pred CCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHH Q ss_conf 897499998228878741001010465311245531011023430354011 Q gi|254780311|r 38 AGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 (177) Q Consensus 38 ~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~ 88 (177) +||+||+ |.+|-.-.-++..++.+..++.|...|+.+.+ |.++ T Consensus 2 ~gkkiv~-------~~G~FDl~H~GHi~~l~~Ak~~gd~LiVgv~s-D~~i 44 (143) T cd02172 2 EGKKVVL-------THGCFDLLHAGHVRHLLAARSLGDILVVGLTS-DRSV 44 (143) T ss_pred CCCEEEE-------ECCEECCCCHHHHHHHHHHHHCCCEEEEEEEC-CHHH T ss_conf 8898999-------92733778999999999999749989999968-9889 No 61 >TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm. Probab=26.24 E-value=29 Score=16.06 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=22.7 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCC--CCCCE---EHHHHHCCCEE Q ss_conf 671881599995367068840368--88402---35898389749 Q gi|254780311|r 3 RFQIPQVVFHMRVATVLPDGSKAF--QWKDV---NTQDLFAGKRV 42 (177) Q Consensus 3 ~~~ip~~~~~ikvGd~~Pd~tl~~--~~~~~---~~~d~f~gKkV 42 (177) |+.||.-||.===||++||..|++ .+|.. -+.++|+.+.+ T Consensus 758 G~~IPFETFLGF~GDKVPDIDLNFSGEYQ~~AH~~vk~lFGe~~~ 802 (1264) T TIGR01405 758 GQDIPFETFLGFKGDKVPDIDLNFSGEYQAKAHNYVKELFGEDHT 802 (1264) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE T ss_conf 369985001677888468644678722477888999986089722 No 62 >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Probab=26.17 E-value=54 Score=14.64 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=35.2 Q ss_pred HHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHH-------HCCCEEEEEECC-CCHHHHHHHCCCCCCEEEEE Q ss_conf 5898389749999822887874100101046531124553-------101102343035-40113665223587527861 Q gi|254780311|r 33 TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC-------EGIEEVYCLSVN-DAFVMNAWGKKLEIKNVKLL 104 (177) Q Consensus 33 ~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~-------~~~~~i~~~s~~-d~~~~~aw~~~~~~~~~~~l 104 (177) +-+.+.||-|.|| +-+.+-|.|-.. -|-..+.|..++. ... +|+.+|+| +.-........+....+-+. T Consensus 19 ~vs~L~GKvVgLY-FSA~WCpPCr~F-TP~L~~fY~~l~~~~~~~~~~~f-EIVfVS~Drse~~f~~y~~~MP~~WlAlP 95 (146) T cd03008 19 IVARLENRVLLLF-FGAVVSPQCQLF-APKLKDFFVRLTDEFYVDRSAQL-ALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146) T ss_pred HHHHCCCCEEEEE-EECCCCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHHHHHHHHHCCCCEEECC T ss_conf 9998189999999-747868148767-78999999999876544037877-99998368999999999997798726657 No 63 >KOG2501 consensus Probab=25.38 E-value=56 Score=14.56 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=36.5 Q ss_pred CCCCCC-CEEHHHHHCCCEEEEEEECCCCCCCCCH---HHCHHHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHCCCCC Q ss_conf 368884-0235898389749999822887874100---101046531124553101102343035-40113665223587 Q gi|254780311|r 24 KAFQWK-DVNTQDLFAGKRVFLFALPGAFTPTCSD---HQLPGFEKIYDDLRCEGIEEVYCLSVN-DAFVMNAWGKKLEI 98 (177) Q Consensus 24 l~~~~~-~~~~~d~f~gKkVvL~~~P~AfTp~Ct~---~~~~~~~~~~~~~~~~~~~~i~~~s~~-d~~~~~aw~~~~~~ 98 (177) |..++. .+-..+.+.||-|.||| -+.+-|.|-. ..+++|.+-.+..+ -. +|+.+|.+ +..-+......+.. T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyF-sA~wC~pCR~FTP~Lk~fYe~l~~~~~--~f-EVvfVS~D~~~~~~~~y~~~~~~ 92 (157) T KOG2501 17 LRKQDGTEVLASEALQGKVVGLYF-SAHWCPPCRDFTPILKDFYEELKDNAA--PF-EVVFVSSDRDEESLDEYMLEHHG 92 (157) T ss_pred EECCCCCCCHHHHHHCCCEEEEEE-EEEECCCHHHCCCHHHHHHHHHHHCCC--CE-EEEEEECCCCHHHHHHHHHHCCC T ss_conf 103687424376862786899998-878778356488668999999973689--66-99999568877899999996399 Q ss_pred CE Q ss_conf 52 Q gi|254780311|r 99 KN 100 (177) Q Consensus 99 ~~ 100 (177) .. T Consensus 93 ~W 94 (157) T KOG2501 93 DW 94 (157) T ss_pred CE T ss_conf 86 No 64 >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769 Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm. Probab=21.11 E-value=53 Score=14.70 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=22.3 Q ss_pred EECCCCCCCCCHHH--CHHHHHHHHHHHHHCCCEEEE Q ss_conf 82288787410010--104653112455310110234 Q gi|254780311|r 46 ALPGAFTPTCSDHQ--LPGFEKIYDDLRCEGIEEVYC 80 (177) Q Consensus 46 ~~P~AfTp~Ct~~~--~~~~~~~~~~~~~~~~~~i~~ 80 (177) =||+.|..+-..-. +.|.++..+.++++|||.|.. T Consensus 10 IYPkSF~D~~g~G~GDl~GII~KLDYLk~LGvD~iWL 46 (555) T TIGR02403 10 IYPKSFYDSTGDGTGDLRGIIEKLDYLKELGVDYIWL 46 (555) T ss_pred ECCCCEECCCCCEECCCCCHHHHHHHHHHHCCCEEEE T ss_conf 5056323379713215102433446778618877852 No 65 >TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process. Probab=20.67 E-value=70 Score=14.04 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=35.7 Q ss_pred EHHHHHCCCEEEEEEECCCCCCCCCHHHCH---------HHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 358983897499998228878741001010---------465311245531011023430354011366 Q gi|254780311|r 32 NTQDLFAGKRVFLFALPGAFTPTCSDHQLP---------GFEKIYDDLRCEGIEEVYCLSVNDAFVMNA 91 (177) Q Consensus 32 ~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~---------~~~~~~~~~~~~~~~~i~~~s~~d~~~~~a 91 (177) -+.+++.-+.+|+ |.+|.+.... .|++|...|..+|+..+-+..+|.+..=+| T Consensus 531 i~~EFl~R~YIVV-------ttGC~Am~ig~~kDe~G~TlYEKY~g~FdagGlVn~GSCvaN~Hi~GAA 592 (795) T TIGR00314 531 IAKEFLERNYIVV-------TTGCAAMDIGMYKDEEGKTLYEKYPGEFDAGGLVNIGSCVANAHIAGAA 592 (795) T ss_pred HHHHHHCCCEEEE-------ECCHHHHHHHHHCCCCCCEEEECCCCEECCCCEEECCCHHHHHHHHHHH T ss_conf 9998641870898-------2426777654320378888752368740365345034101212320258 Done!