HHsearch alignment for GI: 254780311 and conserved domain: pfam05988
>pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.
Probab=95.39 E-value=0.2 Score=27.78 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEE----ECCCCCCCCCHHHCHHHHHHH----HHHHHHCCCEEEEEECCCCHHH-HH
Q ss_conf 84036888402358983897499998----228878741001010465311----2455310110234303540113-66
Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFA----LPGAFTPTCSDHQLPGFEKIY----DDLRCEGIEEVYCLSVNDAFVM-NA 91 (177)
Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~----~P~AfTp~Ct~~~~~~~~~~~----~~~~~~~~~~i~~~s~~d~~~~-~a 91 (177)
T Consensus 48 ~Y~F~gp~G~v~L~dLF~GR~qLivYhfMf~P~~-~~~C~g--CS~~~D~~~g~l~hL~~r--d~t~a~vsraP~~~l~~ 122 (211)
T pfam05988 48 DYRFDGPDGPVTLADLFGGRSQLIVYHFMFGPGW-EAGCPG--CSFLADHFDGALAHLAAR--DVALAAVSRAPLAELVA 122 (211)
T ss_pred CEEEECCCCCEEHHHHHCCCCEEEEEEEECCCCC-CCCCCC--CHHHHHCCCCHHHHHHHC--CCEEEEEECCCHHHHHH
T ss_conf 7587689985328998099742899997027898-899997--222452756137788727--83699993798999999
Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECC
Q ss_conf 5223587527861036715433320022476543441001599998799699999748
Q gi|254780311|r 92 WGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEE 149 (177)
Q Consensus 92 w~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~ 149 (177)
T Consensus 123 ~k~rmGW~-~pw~Ss~~s~Fn~D~~v~~~~~~e~pg~----svF~rd~g~Vfhtyst~ 175 (211)
T pfam05988 123 YKRRMGWT-FPWYSSVGSDFNRDFGVSFTEEGERPGL----SVFLRDGGRVFHTYSTY 175 (211)
T ss_pred HHHHCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCE----EEEEECCCEEEEEECCC
T ss_conf 99975997-1478658976653147521787877615----89997699899965258