RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780311|ref|YP_003064724.1| hypothetical protein
CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>gnl|CDD|149549 pfam08534, Redoxin, Redoxin. This family of redoxins includes
peroxiredoxin, thioredoxin and glutaredoxin proteins.
Length = 142
Score = 85.9 bits (213), Expect = 5e-18
Identities = 53/158 (33%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 15 VATVLPDGSKAFQWKDVNTQDL--FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
PD + D T L F GK+V L PGAF PTCS + P EK+ +
Sbjct: 1 AGDKAPDFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCS-AEHPYLEKLSKLYKA 59
Query: 73 EGIEEVYCLSVNDAF-VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSW 131
+G++ V + ND F VMN W K E +L DG G FT+ G+ GLR+
Sbjct: 60 KGVDVVAVNASNDPFFVMNFWAK--EGLKYPVLADGDGAFTKAYGLT-----EDAGLRTP 112
Query: 132 RYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVL 169
RY + +D V V DP ++S E VL
Sbjct: 113 RYFLIDEDGKVVYLEVGP--------DPGDVSDAEAVL 142
>gnl|CDD|183884 PRK13189, PRK13189, peroxiredoxin; Provisional.
Length = 222
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 30 DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVM 89
+ D + GK LF+ P FTP C+ + F+K YD+ R E + LS++ F
Sbjct: 26 PIKLPDDYKGKWFVLFSHPADFTPVCTT-EFVAFQKRYDEFRELNTELI-GLSIDQVFSH 83
Query: 90 NAWGKKLEIK-NVK----LLPDGSGEFTRKMGML 118
W + ++ K V+ ++ D GE +K+GM+
Sbjct: 84 IKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117
>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional.
Length = 202
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 39 GKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLE 97
GK V LF+ P FTP C+ + F + Y+D + G+E V LSV+ + AW + +E
Sbjct: 27 GKWVLLFSHPADFTPVCTT-EFIAFSRRYEDFKKLGVELV-GLSVDSIYSHIAWLRDIE 83
>gnl|CDD|163149 TIGR03137, AhpC, peroxiredoxin. This gene contains two invariant
cysteine residues, one near the N-terminus and one near
the C-terminus, each followed immediately by a proline
residue.
Length = 187
Score = 37.8 bits (88), Expect = 0.002
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 17 TVLPDGSKAF---QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE 73
+ P + A+ ++ +V +D+ VF F P FT C +L Y +L+
Sbjct: 7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFF-YPADFTFVCPT-ELEDLADKYAELKKL 64
Query: 74 GIEEVYCLSVNDAFVMNAWGKKLE-IKNVK--LLPDGSGEFTRKMGMLVYKDNVGFGLR 129
G+E VY +S + FV AW E I + +L D +G TR G+L+ + G R
Sbjct: 65 GVE-VYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLI--EEAGLADR 120
>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional.
Length = 215
Score = 36.7 bits (85), Expect = 0.003
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 35 DLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGK 94
D + G+ LF+ PG FTP C+ + F K Y++ + E + LSV+ W
Sbjct: 29 DDYKGRWFVLFSHPGDFTPVCTT-EFYSFAKKYEEFKKLNTELI-GLSVDSNISHIEWVM 86
Query: 95 KLEIKNVK------LLPDGSGEFTRKMGML 118
+E KN+K ++ D G +++GM+
Sbjct: 87 WIE-KNLKVEVPFPIIADPMGNVAKRLGMI 115
>gnl|CDD|162355 TIGR01429, AMP_deaminase, AMP deaminase. This model describes
AMP deaminase, a large, well-conserved eukaryotic
protein involved in energy metabolism. Most members of
the family have an additional, poorly alignable region
of 150 amino acids or more N-terminal to the region
included in the model.
Length = 611
Score = 28.7 bits (64), Expect = 0.94
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 52 TPTCSDHQLPGFEKIYDDLRCEGIEEVY 79
P C D P E Y G+ VY
Sbjct: 63 DPYCLDDDAPPIELGYLVRMHGGVLFVY 90
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 28.5 bits (64), Expect = 0.95
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 110 EFTRKMGMLV----YKDNVGFGLRSWRYGALIKDMVVESWFV 147
E ++ G+LV + NVG WR G +++ ++ + WFV
Sbjct: 322 EDLKEEGLLVKIEPHTHNVGTC---WRSGTVVEPLLSKQWFV 360
>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional.
Length = 215
Score = 27.4 bits (60), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 37 FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96
+AGK LF+ P FTP C+ + F + +D + E E+ LSV+ F W + +
Sbjct: 26 YAGKWFVLFSHPADFTPVCTT-EFVEFARKANDFK-ELNTELIGLSVDQVFSHIKWVEWI 83
Query: 97 EIKNVKLLP-----DGSGEFTRKMGML 118
+ +P D G+ + ++GM+
Sbjct: 84 KDNTNIAIPFPVIADDLGKVSNQLGMI 110
>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.
Length = 154
Score = 26.8 bits (60), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 31 VNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76
V+ D F G+RV ++ P A TP C+ Q G D+L+ G+
Sbjct: 23 VSLTD-FQGQRVLVYFYPKAMTPGCTV-QACGLRDNMDELKKAGVV 66
>gnl|CDD|179809 PRK04286, PRK04286, hypothetical protein; Provisional.
Length = 298
Score = 25.7 bits (57), Expect = 6.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 57 DHQLPGFEKIYDDLRCEGIEEVY 79
DH P +E Y+ E +E+Y
Sbjct: 77 DHHTPFYEDPYELSDEEIPKEIY 99
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 25.8 bits (57), Expect = 6.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 122 DNVGFGLR-SWRYGAL 136
DNVG GL+ WR AL
Sbjct: 100 DNVGLGLKGQWRDAAL 115
>gnl|CDD|130290 TIGR01223, Pmev_kin_anim, phosphomevalonate kinase, animal type.
This enzyme is part of the mevalonate pathway, one of
two alternative pathways for the biosynthesis of IPP. In
an example of nonorthologous gene displacement, two
different types of phosphomevalonate kinase are found.
One is this type, found in animals. The other is the
ERG8 type, found in plants and fungi (TIGR01219) and in
Gram-positive bacteria (TIGR01220).
Length = 182
Score = 25.4 bits (55), Expect = 8.4
Identities = 5/53 (9%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 88 VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDM 140
+ + ++ + +LL + + + M+ + + R G + +
Sbjct: 37 LKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEK----RQADPGFFCRKI 85
>gnl|CDD|163297 TIGR03503, TIGR03503, conserved hypothetical protein TIGR03503.
This set of conserved hypothetical protein has a
phylogenetic range that closely matches that of
TIGR03501, a putative C-terminal protein targeting
signal.
Length = 374
Score = 25.4 bits (56), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 15 VATVLPDGSKAFQWK 29
V V PDGSK + W+
Sbjct: 32 VILVRPDGSKYYAWR 46
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,999,306
Number of extensions: 185656
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 17
Length of query: 177
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,114,577
Effective search space: 370311930
Effective search space used: 370311930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)