RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780311|ref|YP_003064724.1| hypothetical protein
CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62]
         (177 letters)



>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
           transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
           c.47.1.10
          Length = 241

 Score =  170 bits (433), Expect = 1e-43
 Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 13/173 (7%)

Query: 5   QIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFE 64
           ++PQV F  R            +W DV T +LF  K V +F+LPGAFTPTCS   LP + 
Sbjct: 8   KVPQVTFRTRQGD---------KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYN 58

Query: 65  KIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
           ++    +  G++++  +SVND FVMNAW +  + +N+  +PDG+GEFT  MGMLV K+++
Sbjct: 59  ELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDL 118

Query: 125 GFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177
           GFG RSWRY  L+K+ VVE  F+E     N   DP+++S  + +LK +    +
Sbjct: 119 GFGKRSWRYSMLVKNGVVEKMFIEP----NEPGDPFKVSDADTMLKYLAPQHQ 167


>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
           peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
           falciparum} SCOP: c.47.1.10
          Length = 182

 Score =  165 bits (419), Expect = 5e-42
 Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 4/176 (2%)

Query: 5   QIPQVVFHMRVATVLPDGSK---AFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLP 61
            IP V   + V  +            +  ++T +LF  K++ L +LPGAFTPTCS   +P
Sbjct: 6   LIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIP 65

Query: 62  GFEKIYDDLRCEG-IEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120
           G+E+ YD    E   +++YC++ ND +V+ +W K ++IK +K + DG+  FT  M MLV 
Sbjct: 66  GYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVD 125

Query: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESK 176
           K N   G+R WR+ A++++ ++   F E+    N  TDPY+IS+  NV + ++ ++
Sbjct: 126 KSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNNQ 181


>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
           {Arenicola marina}
          Length = 167

 Score =  119 bits (299), Expect = 4e-28
 Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 27  QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
               VN  +LFAGK+  LFA+PGAFTP  S   LPG+ +    +  +G++ + C++VND+
Sbjct: 19  PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS 78

Query: 87  FVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145
           FVM+AWGK       V++L D  G FT+ + M +    V   +RS RY  +I+D VV   
Sbjct: 79  FVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKV 138

Query: 146 FVEEGFSDNCATDPYEISSPENVLKVIR 173
            VE              S   N+L  + 
Sbjct: 139 NVEP------DGKGLTCSLAPNILSQLG 160


>1hd2_A Peroxiredoxin 5 residues 54-214; antioxidant enzyme, thioredoxin
           peroxidase, thioredoxin fold; 1.5A {Homo sapiens} SCOP:
           c.47.1.10 PDB: 1h4o_A 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A
          Length = 161

 Score =  116 bits (292), Expect = 2e-27
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 13  MRVATVLPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL 70
           ++V   +P     +      VN  +LF GK+  LF +PGAFTP CS   LPGF +  + L
Sbjct: 3   IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62

Query: 71  RCEGIEEVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--G 127
           + +G++ V CLSVNDAFV   WG+  + +  V+LL D +G F ++  +L+    V     
Sbjct: 63  KAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGN 122

Query: 128 LRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172
            R  R+  +++D +V++  VE              S   N++  +
Sbjct: 123 RRLKRFSMVVQDGIVKALNVEP------DGTGLTCSLAPNIISQL 161


>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
           oxidoreductase; 2.80A {Pisum sativum}
          Length = 171

 Score =  116 bits (291), Expect = 3e-27
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 16  ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75
                D     ++      D+F  K+V +F LPGA+T  CS   +P ++   D  + +G+
Sbjct: 20  KARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGV 79

Query: 76  EEVYCLSVNDAFVMNAWGKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYG 134
           + V C+++ND + +NAW +K++ K+ ++   D  G F + + +         G+RS R+ 
Sbjct: 80  DSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWS 139

Query: 135 ALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172
           A + D  V++  VEE  SD       ++S  E +L  I
Sbjct: 140 AYVVDGKVKALNVEESPSD------VKVSGAETILGQI 171


>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
           DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
           1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
          Length = 173

 Score =  110 bits (277), Expect = 1e-25
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 19  LPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76
           +P     +      VN  +LF GK+  LF +PGAFTP CS   LPGF +  + L+ +G++
Sbjct: 21  IPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQ 80

Query: 77  EVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--GLRSWRY 133
            V CLSVNDAFV   WG+  + +  V+LL D +G F ++  +L+    V      R  R+
Sbjct: 81  VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRF 140

Query: 134 GALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLK 170
             +++D +V++  VE              S   N++ 
Sbjct: 141 SMVVQDGIVKALNVEP------DGTGLTCSLAPNIIS 171


>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
           oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
           c.47.1.10
          Length = 162

 Score = 86.9 bits (214), Expect = 2e-18
 Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 8/147 (5%)

Query: 27  QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
           Q ++V+   L AGK+V LF +PGAFTPTCS   +PGF +   +L+ +G+ E+ C+SVND 
Sbjct: 23  QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP 82

Query: 87  FVMNAWGKKLEIKNV-KLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145
           FVM AW K        K L DGS  +T  +G+ +     G G RS R+  L+ D+ V++ 
Sbjct: 83  FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAA 142

Query: 146 FVEEGFSDNCATDPYEISSPENVLKVI 172
            +E G         + +SS E++LK +
Sbjct: 143 NIEGG-------GEFTVSSAEDILKDL 162


>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
           oxidoreductase; 1.60A {Xylella fastidiosa}
          Length = 179

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 19/168 (11%)

Query: 12  HMRVATVLPDGSKAF--QWKDVNTQDL--FAGKRVFLFALPGAFTPTCSDHQLPGFEKIY 67
           HM +   L                + L  +  + + L+  P   TP  S  +   F  + 
Sbjct: 20  HMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSST-EGLEFNLLL 78

Query: 68  DDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFG 127
                     V  +S +     +++  K       L+ D      +   ++  K   G  
Sbjct: 79  PQFEQINA-TVLGVSRDSVKSHDSFCAKQGF-TFPLVSDSDAILCKAFDVIKEKTMYGRQ 136

Query: 128 LRSW-RYGALI-KDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIR 173
           +    R   LI     +   + +     +           E VL  ++
Sbjct: 137 VIGIERSTFLIGPTHRIVEAWRQVKVPGH----------AEEVLNKLK 174


>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
           structure initiative; 1.90A {Haemophilus influenzae}
           SCOP: c.47.1.10
          Length = 165

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 14  RVATVLPDGS-KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
           +V  ++ +         DV   D FA KR  L   P   T  C    +  F +    L  
Sbjct: 18  QVGEIVENFILVGNDLADVALND-FASKRKVLNIFPSIDTGVC-ATSVRKFNQQAAKL-- 73

Query: 73  EGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVY-KDNVGFGLRS 130
                V C+S +  F    +     I+N K +    +     ++G+ +      G   R+
Sbjct: 74  -SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRA 132

Query: 131 WRYGALIKD---MVVESWFVEE 149
                ++ D    V+ S  VEE
Sbjct: 133 ----VIVLDEQNNVLHSQLVEE 150


>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
           decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
           2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
           1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
          Length = 186

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 27  QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
           ++ +V  +D   G+    F  P  FT      +L      Y++   +   +VY +S +  
Sbjct: 19  EFIEVTEKD-TEGRWSVFFFYPADFTFVSPT-ELGDVADHYEE-LQKLGVDVYSVSTDTH 75

Query: 87  FVMNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123
           F   AW    + +      ++ D +G  TR    +   + 
Sbjct: 76  FTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG 115


>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
           3.2A {Crithidia fasciculata} SCOP: c.47.1.10
          Length = 188

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 15  VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74
              ++P+G+    +K V+    + GK V LF  P  FT  C   ++  F         E 
Sbjct: 17  DMALMPNGT----FKKVSLSS-YKGKYVVLFFYPMDFTFVCP-TEIIQFSDDAKR-FAEI 69

Query: 75  IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGL 128
             EV   S +  +    W      K       + +L D +    R  G  V  ++ G   
Sbjct: 70  NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYG--VLDEDSGVAY 127

Query: 129 RS 130
           R 
Sbjct: 128 RG 129


>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
           signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
           c.47.1.10
          Length = 224

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 13  MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
           + +  V P+         +   D        LF+ P  FTP C+  +L    K+  +   
Sbjct: 5   LLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCT-TELGRAAKLAPEFAK 63

Query: 73  EGIEEVYCLSVNDAFVMNAWGKKLEIK---------NVKLLPDGSGEFTRKMGMLVYKDN 123
             + ++  LS++      AW K +               ++ D + E    +GML   + 
Sbjct: 64  RNV-KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122

Query: 124 VGFGL 128
              G+
Sbjct: 123 DEKGM 127


>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
           oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris
           PV} PDB: 3gkk_A 3gkm_A
          Length = 163

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 16/151 (10%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
                +   AG  + ++  P   TP     +   F  +  +    G  ++  +S +    
Sbjct: 26  TQTTLRA-HAGHWLVIYFYPKDSTPGA-TTEGLDFNALLPEFDKAGA-KILGVSRDSVKS 82

Query: 89  MNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSW-RYGALI-KDMVVESWF 146
            + +  K       +  DG     R   ++  K+  G  +    R   L+  +  V   +
Sbjct: 83  HDNFCAKQGFAFPLVS-DGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141

Query: 147 VEEGFSDNCATDPYEISSPENVLKVIRESKK 177
            +   + +           + VL  ++   K
Sbjct: 142 RKVKVAGH----------ADAVLAALKAHAK 162


>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
           {Arenicola marina} PDB: 2v32_A 2v41_A
          Length = 233

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 13  MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
           + +  V P+         +   D        LF+ P  FTP  +   L    ++  D + 
Sbjct: 3   ITLGEVFPNFEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTE-LGRVIQLEGDFKK 61

Query: 73  EGIEEVYCLSVNDAFVMNAWGKKLEIK-------NVKLLPDGSGEFTRKMGMLVYKDNVG 125
            G+ ++  LS ++      W + ++            ++ D + E   K+GM+   +   
Sbjct: 62  RGV-KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120

Query: 126 FGLRSWRYGALIKD 139
            G+        I  
Sbjct: 121 TGMPLTCRAVFIIG 134


>3hvv_A Thiol peroxidase, scavengase P20; oxidoreductase, TPX,
           peroxiredoxin, antioxidant; 1.75A {Escherichia coli
           k-12} PDB: 3hvs_A* 1qxh_A* 3i43_A* 3hvx_A
          Length = 167

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 33  TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92
           T   FAGKR  L   P   T   +       +   +         V C+S +  F  + +
Sbjct: 38  TLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNTV----VLCISADLPFAQSRF 93

Query: 93  GKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD-MVVESWFVEE 149
                + N + L    + EF +  G+ +  D    GL +     + ++  V+ S  V+E
Sbjct: 94  CGAEGLNNVITLSTFRNAEFLQAYGVAI-ADGPLKGLAARAVVVIDENDNVIFSQLVDE 151


>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
           2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
          Length = 202

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 13/118 (11%)

Query: 15  VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74
              ++P+G+     K V     + GK + LF  P  FT  C                 + 
Sbjct: 17  ETALMPNGTF----KKVALTS-YKGKWLVLFFYPMDFTFVCPTEICQFS--DRVKEFSDI 69

Query: 75  IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGF 126
             EV   S++  +   AW      +      N+ +L D +    +  G+L  +D V +
Sbjct: 70  GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAY 127


>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
           {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
           3hy2_A*
          Length = 197

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
           K+V   D + GK V LF  P  FT       +    +  D  +     EV  +SV+  F 
Sbjct: 25  KEVKLSD-YKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQFT 81

Query: 89  MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNV 124
             AW      +      N+ LL D +   +   G+L   + +
Sbjct: 82  HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI 123


>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
           protein structure initiative, midwest center for
           structural genomics; HET: MSE; 1.80A {Chromobacterium
           violaceum}
          Length = 224

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 4/122 (3%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
            D   +  F+     +  L        +   L   E            ++  ++V+    
Sbjct: 39  HDAALES-FSHTPKLIVTLLSVDEDEHA-GLLLLRETRRFLDS-WPHLKLIVITVDSPSS 95

Query: 89  MNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFV 147
           +     +  + N+ LL      +F ++ G+L+ +  +          A   ++V  S  +
Sbjct: 96  LARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155

Query: 148 EE 149
             
Sbjct: 156 AN 157


>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
           antioxidant, oxidoreductase, redox-active center; 1.65A
           {Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
           2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
          Length = 249

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 22  GSKA--FQWKDVN------TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE 73
           G +    +    +         +  GK   LF+ P  FTP C+  +   F + Y+D +  
Sbjct: 8   GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQRL 66

Query: 74  GIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLP-----DGSGEFTRKMGMLVYKDNVG 125
           G++    LSV+  F    W + +E      +P     D  G   R++G+L  +    
Sbjct: 67  GVDL-IGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATH 122


>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
           consortium, SGC; 1.80A {Homo sapiens}
          Length = 211

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 16  ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75
            T + DG    ++K++   D + GK +  F  P  FT  C   ++  F    ++ R    
Sbjct: 30  GTAVIDG----EFKELKLTD-YRGKYLVFFFYPLDFTFVCP-TEIIAFGDRLEEFRSINT 83

Query: 76  EEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDN 123
            EV   SV+  F   AW      +       + LL D + + ++  G+ +    
Sbjct: 84  -EVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG 136


>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
           oxidoreductase, structural proteomics in europe, spine;
           2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
          Length = 195

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 33  TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92
           T D   GK   +F  P  FT  C        +   +    +   ++  +S++  F    W
Sbjct: 39  TSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDA--QILGVSIDSEFAHFQW 96

Query: 93  GKKLEIK---NVKLLPDGSGEFTRKMGMLVYKDNVGFG 127
             +          +L D   E ++  G+L         
Sbjct: 97  RAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRV 134


>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
           dependant, mitochondrial, antioxidant, oxidoreductase,
           redox-active center; 1.78A {Plasmodium falciparum}
          Length = 221

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 19  LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78
               +K  +  +V+       K   L   P  +T  C   ++  F K   D       E+
Sbjct: 36  AQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVC-PTEIIEFNKHIKD-FENKNVEL 93

Query: 79  YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGM 117
             +SV+  +   AW      K         L+ D + + ++   +
Sbjct: 94  LGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138


>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
           oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
           c.47.1.10
          Length = 198

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
           +            V LF  P  FT  C   ++  F+K   D   +G   V  +S++   V
Sbjct: 23  EHFELSKNLGKNGVILFFWPKDFTFVC-PTEIIAFDKRVKDFHEKGF-NVIGVSIDSEQV 80

Query: 89  MNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118
             AW      K      +  ++ D +   +R   +L
Sbjct: 81  HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVL 116


>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
           SGC, structural genomics consortium, oxidoreductase;
           2.30A {Plasmodium yoelii} SCOP: c.47.1.10
          Length = 192

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 19  LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78
                    + +V+  D    K V L+  P  FT  C   ++   +K  D  +   + E+
Sbjct: 11  AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVC-PSEIIALDKALDSFKERNV-EL 68

Query: 79  YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118
              SV+  F   AW K    +         L+ D S    R   +L
Sbjct: 69  LGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL 114


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.7 bits (82), Expect = 0.006
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 42/117 (35%)

Query: 45  FALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE--------EVYC---------LSVN--- 84
           F LP   +P  S   +P  + I  DL    +          VY          LS +   
Sbjct: 420 F-LP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477

Query: 85  DAFVM------NAWGKKLEIKNVKLL---PDG-SGEFTRKMGMLVY--KDNVGFGLR 129
                        W    + K   +L   P G SG     +G+L +  KD  G G+R
Sbjct: 478 RIVDCIIRLPVK-WETTTQFKATHILDFGPGGASG-----LGVLTHRNKD--GTGVR 526


>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
           oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
           c.47.1.10
          Length = 187

 Score = 34.4 bits (78), Expect = 0.016
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
            +V   D   GK   +   P  F+  C   +L   +K Y +   +   EVY +S +  FV
Sbjct: 22  FEVTEAD-LKGKWSIVVFYPADFSFVC-PTELEDVQKEYAE-LKKLGVEVYSVSTDTHFV 78

Query: 89  MNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
             AW      +      ++ D S   +R+  +L  +  +
Sbjct: 79  HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL 117


>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
           structural genomics consortium, SGC; 2.30A {Plasmodium
           yoelii} SCOP: c.47.1.10
          Length = 220

 Score = 34.0 bits (77), Expect = 0.021
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 29  KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
            D             LF+ P  FTP C+  +L    K+++D       ++   S N    
Sbjct: 21  GDFELYKYIENSWAILFSHPNDFTPVCT-TELAELGKMHEDFLKLNC-KLIGFSCNSKES 78

Query: 89  MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD 139
            + W + ++         + ++ D S E   K+ ++  ++    GL           
Sbjct: 79  HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFIS 135


>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
           peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
           c.47.1.10
          Length = 220

 Score = 32.5 bits (73), Expect = 0.052
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 27  QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
           ++K+++  D F GK + LF  P  FT  C       F     +       EV  +SV+  
Sbjct: 45  EFKEISLDD-FKGKYLVLFFYPLDFTFVCPTEI-IAFSDKASEFHDVNC-EVVAVSVDSH 101

Query: 87  FVMNAWGKK------LEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
           F   AW         L   N+ LL D + + +R  G+L+    +
Sbjct: 102 FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 145


>1vki_A Hypothetical protein ATU3699; 15159614, structural genomics, JCSG,
           PSI, protein structure initiative; 1.60A {Agrobacterium
           tumefaciens str} SCOP: d.116.1.1
          Length = 181

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 8/57 (14%), Positives = 14/57 (24%)

Query: 24  KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYC 80
           K        +         +L  +PG+ T   + +          D      E V  
Sbjct: 91  KTIGAASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNG 147


>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like
           structure, beta sheet, isomerase; 1.30A {Streptococcus
           suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
          Length = 197

 Score = 25.4 bits (55), Expect = 8.0
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 90  NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEE 149
           N +GK L  + V+ +P G  EF       V+ DN G+   +++   ++     ES+F E 
Sbjct: 4   NFFGKTLAARPVEAIP-GMLEFDIP----VHGDNRGWFKENFQKEKMLPLGFPESFFAEG 58

Query: 150 GFSDNC 155
              +N 
Sbjct: 59  KLQNNV 64


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,638,000
Number of extensions: 74865
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 33
Length of query: 177
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 91
Effective length of database: 3,608,246
Effective search space: 328350386
Effective search space used: 328350386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)