RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Length = 241 Score = 170 bits (433), Expect = 1e-43 Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 13/173 (7%) Query: 5 QIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFE 64 ++PQV F R +W DV T +LF K V +F+LPGAFTPTCS LP + Sbjct: 8 KVPQVTFRTRQGD---------KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYN 58 Query: 65 KIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124 ++ + G++++ +SVND FVMNAW + + +N+ +PDG+GEFT MGMLV K+++ Sbjct: 59 ELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDL 118 Query: 125 GFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177 GFG RSWRY L+K+ VVE F+E N DP+++S + +LK + + Sbjct: 119 GFGKRSWRYSMLVKNGVVEKMFIEP----NEPGDPFKVSDADTMLKYLAPQHQ 167 >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 Length = 182 Score = 165 bits (419), Expect = 5e-42 Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 5 QIPQVVFHMRVATVLPDGSK---AFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLP 61 IP V + V + + ++T +LF K++ L +LPGAFTPTCS +P Sbjct: 6 LIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIP 65 Query: 62 GFEKIYDDLRCEG-IEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120 G+E+ YD E +++YC++ ND +V+ +W K ++IK +K + DG+ FT M MLV Sbjct: 66 GYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVD 125 Query: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESK 176 K N G+R WR+ A++++ ++ F E+ N TDPY+IS+ NV + ++ ++ Sbjct: 126 KSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNNQ 181 >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} Length = 167 Score = 119 bits (299), Expect = 4e-28 Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 7/148 (4%) Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 VN +LFAGK+ LFA+PGAFTP S LPG+ + + +G++ + C++VND+ Sbjct: 19 PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS 78 Query: 87 FVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145 FVM+AWGK V++L D G FT+ + M + V +RS RY +I+D VV Sbjct: 79 FVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKV 138 Query: 146 FVEEGFSDNCATDPYEISSPENVLKVIR 173 VE S N+L + Sbjct: 139 NVEP------DGKGLTCSLAPNILSQLG 160 >1hd2_A Peroxiredoxin 5 residues 54-214; antioxidant enzyme, thioredoxin peroxidase, thioredoxin fold; 1.5A {Homo sapiens} SCOP: c.47.1.10 PDB: 1h4o_A 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A Length = 161 Score = 116 bits (292), Expect = 2e-27 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 13 MRVATVLPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL 70 ++V +P + VN +LF GK+ LF +PGAFTP CS LPGF + + L Sbjct: 3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62 Query: 71 RCEGIEEVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--G 127 + +G++ V CLSVNDAFV WG+ + + V+LL D +G F ++ +L+ V Sbjct: 63 KAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGN 122 Query: 128 LRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172 R R+ +++D +V++ VE S N++ + Sbjct: 123 RRLKRFSMVVQDGIVKALNVEP------DGTGLTCSLAPNIISQL 161 >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} Length = 171 Score = 116 bits (291), Expect = 3e-27 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 7/158 (4%) Query: 16 ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75 D ++ D+F K+V +F LPGA+T CS +P ++ D + +G+ Sbjct: 20 KARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGV 79 Query: 76 EEVYCLSVNDAFVMNAWGKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYG 134 + V C+++ND + +NAW +K++ K+ ++ D G F + + + G+RS R+ Sbjct: 80 DSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWS 139 Query: 135 ALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172 A + D V++ VEE SD ++S E +L I Sbjct: 140 AYVVDGKVKALNVEESPSD------VKVSGAETILGQI 171 >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A Length = 173 Score = 110 bits (277), Expect = 1e-25 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 19 LPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76 +P + VN +LF GK+ LF +PGAFTP CS LPGF + + L+ +G++ Sbjct: 21 IPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQ 80 Query: 77 EVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--GLRSWRY 133 V CLSVNDAFV WG+ + + V+LL D +G F ++ +L+ V R R+ Sbjct: 81 VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRF 140 Query: 134 GALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLK 170 +++D +V++ VE S N++ Sbjct: 141 SMVVQDGIVKALNVEP------DGTGLTCSLAPNIIS 171 >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 Length = 162 Score = 86.9 bits (214), Expect = 2e-18 Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 8/147 (5%) Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 Q ++V+ L AGK+V LF +PGAFTPTCS +PGF + +L+ +G+ E+ C+SVND Sbjct: 23 QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP 82 Query: 87 FVMNAWGKKLEIKNV-KLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145 FVM AW K K L DGS +T +G+ + G G RS R+ L+ D+ V++ Sbjct: 83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAA 142 Query: 146 FVEEGFSDNCATDPYEISSPENVLKVI 172 +E G + +SS E++LK + Sbjct: 143 NIEGG-------GEFTVSSAEDILKDL 162 >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 Score = 56.9 bits (137), Expect = 3e-09 Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 19/168 (11%) Query: 12 HMRVATVLPDGSKAF--QWKDVNTQDL--FAGKRVFLFALPGAFTPTCSDHQLPGFEKIY 67 HM + L + L + + + L+ P TP S + F + Sbjct: 20 HMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSST-EGLEFNLLL 78 Query: 68 DDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFG 127 V +S + +++ K L+ D + ++ K G Sbjct: 79 PQFEQINA-TVLGVSRDSVKSHDSFCAKQGF-TFPLVSDSDAILCKAFDVIKEKTMYGRQ 136 Query: 128 LRSW-RYGALI-KDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIR 173 + R LI + + + + E VL ++ Sbjct: 137 VIGIERSTFLIGPTHRIVEAWRQVKVPGH----------AEEVLNKLK 174 >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165 Score = 51.6 bits (123), Expect = 1e-07 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 14 RVATVLPDGS-KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72 +V ++ + DV D FA KR L P T C + F + L Sbjct: 18 QVGEIVENFILVGNDLADVALND-FASKRKVLNIFPSIDTGVC-ATSVRKFNQQAAKL-- 73 Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVY-KDNVGFGLRS 130 V C+S + F + I+N K + + ++G+ + G R+ Sbjct: 74 -SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRA 132 Query: 131 WRYGALIKD---MVVESWFVEE 149 ++ D V+ S VEE Sbjct: 133 ----VIVLDEQNNVLHSQLVEE 150 >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186 Score = 51.2 bits (122), Expect = 1e-07 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 ++ +V +D G+ F P FT +L Y++ + +VY +S + Sbjct: 19 EFIEVTEKD-TEGRWSVFFFYPADFTFVSPT-ELGDVADHYEE-LQKLGVDVYSVSTDTH 75 Query: 87 FVMNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123 F AW + + ++ D +G TR + + Sbjct: 76 FTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG 115 >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 Score = 48.9 bits (116), Expect = 7e-07 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 15/122 (12%) Query: 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74 ++P+G+ +K V+ + GK V LF P FT C ++ F E Sbjct: 17 DMALMPNGT----FKKVSLSS-YKGKYVVLFFYPMDFTFVCP-TEIIQFSDDAKR-FAEI 69 Query: 75 IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGL 128 EV S + + W K + +L D + R G V ++ G Sbjct: 70 NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYG--VLDEDSGVAY 127 Query: 129 RS 130 R Sbjct: 128 RG 129 >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224 Score = 46.9 bits (111), Expect = 2e-06 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%) Query: 13 MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72 + + V P+ + D LF+ P FTP C+ +L K+ + Sbjct: 5 LLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCT-TELGRAAKLAPEFAK 63 Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIK---------NVKLLPDGSGEFTRKMGMLVYKDN 123 + ++ LS++ AW K + ++ D + E +GML + Sbjct: 64 RNV-KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122 Query: 124 VGFGL 128 G+ Sbjct: 123 DEKGM 127 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163 Score = 46.3 bits (109), Expect = 4e-06 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 16/151 (10%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 + AG + ++ P TP + F + + G ++ +S + Sbjct: 26 TQTTLRA-HAGHWLVIYFYPKDSTPGA-TTEGLDFNALLPEFDKAGA-KILGVSRDSVKS 82 Query: 89 MNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSW-RYGALI-KDMVVESWF 146 + + K + DG R ++ K+ G + R L+ + V + Sbjct: 83 HDNFCAKQGFAFPLVS-DGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 Query: 147 VEEGFSDNCATDPYEISSPENVLKVIRESKK 177 + + + + VL ++ K Sbjct: 142 RKVKVAGH----------ADAVLAALKAHAK 162 >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233 Score = 45.1 bits (106), Expect = 8e-06 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 13 MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72 + + V P+ + D LF+ P FTP + L ++ D + Sbjct: 3 ITLGEVFPNFEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTE-LGRVIQLEGDFKK 61 Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIK-------NVKLLPDGSGEFTRKMGMLVYKDNVG 125 G+ ++ LS ++ W + ++ ++ D + E K+GM+ + Sbjct: 62 RGV-KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120 Query: 126 FGLRSWRYGALIKD 139 G+ I Sbjct: 121 TGMPLTCRAVFIIG 134 >3hvv_A Thiol peroxidase, scavengase P20; oxidoreductase, TPX, peroxiredoxin, antioxidant; 1.75A {Escherichia coli k-12} PDB: 3hvs_A* 1qxh_A* 3i43_A* 3hvx_A Length = 167 Score = 44.1 bits (103), Expect = 2e-05 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 7/119 (5%) Query: 33 TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92 T FAGKR L P T + + + V C+S + F + + Sbjct: 38 TLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNTV----VLCISADLPFAQSRF 93 Query: 93 GKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD-MVVESWFVEE 149 + N + L + EF + G+ + D GL + + ++ V+ S V+E Sbjct: 94 CGAEGLNNVITLSTFRNAEFLQAYGVAI-ADGPLKGLAARAVVVIDENDNVIFSQLVDE 151 >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 Score = 44.0 bits (103), Expect = 2e-05 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 13/118 (11%) Query: 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74 ++P+G+ K V + GK + LF P FT C + Sbjct: 17 ETALMPNGTF----KKVALTS-YKGKWLVLFFYPMDFTFVCPTEICQFS--DRVKEFSDI 69 Query: 75 IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGF 126 EV S++ + AW + N+ +L D + + G+L +D V + Sbjct: 70 GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAY 127 >1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A* Length = 197 Score = 39.7 bits (92), Expect = 4e-04 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 K+V D + GK V LF P FT + + D + EV +SV+ F Sbjct: 25 KEVKLSD-YKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQFT 81 Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNV 124 AW + N+ LL D + + G+L + + Sbjct: 82 HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI 123 >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224 Score = 39.3 bits (91), Expect = 4e-04 Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 D + F+ + L + L E ++ ++V+ Sbjct: 39 HDAALES-FSHTPKLIVTLLSVDEDEHA-GLLLLRETRRFLDS-WPHLKLIVITVDSPSS 95 Query: 89 MNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFV 147 + + + N+ LL +F ++ G+L+ + + A ++V S + Sbjct: 96 LARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155 Query: 148 EE 149 Sbjct: 156 AN 157 >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249 Score = 39.4 bits (91), Expect = 5e-04 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 15/117 (12%) Query: 22 GSKA--FQWKDVN------TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE 73 G + + + + GK LF+ P FTP C+ + F + Y+D + Sbjct: 8 GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQRL 66 Query: 74 GIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLP-----DGSGEFTRKMGMLVYKDNVG 125 G++ LSV+ F W + +E +P D G R++G+L + Sbjct: 67 GVDL-IGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATH 122 >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211 Score = 38.6 bits (89), Expect = 7e-04 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 16 ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75 T + DG ++K++ D + GK + F P FT C ++ F ++ R Sbjct: 30 GTAVIDG----EFKELKLTD-YRGKYLVFFFYPLDFTFVCP-TEIIAFGDRLEEFRSINT 83 Query: 76 EEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDN 123 EV SV+ F AW + + LL D + + ++ G+ + Sbjct: 84 -EVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG 136 >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in europe, spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195 Score = 38.0 bits (87), Expect = 0.001 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%) Query: 33 TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92 T D GK +F P FT C + + + ++ +S++ F W Sbjct: 39 TSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDA--QILGVSIDSEFAHFQW 96 Query: 93 GKKLEIK---NVKLLPDGSGEFTRKMGMLVYKDNVGFG 127 + +L D E ++ G+L Sbjct: 97 RAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRV 134 >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221 Score = 37.8 bits (87), Expect = 0.001 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%) Query: 19 LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78 +K + +V+ K L P +T C ++ F K D E+ Sbjct: 36 AQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVC-PTEIIEFNKHIKD-FENKNVEL 93 Query: 79 YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGM 117 +SV+ + AW K L+ D + + ++ + Sbjct: 94 LGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138 >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198 Score = 37.1 bits (85), Expect = 0.003 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 + V LF P FT C ++ F+K D +G V +S++ V Sbjct: 23 EHFELSKNLGKNGVILFFWPKDFTFVC-PTEIIAFDKRVKDFHEKGF-NVIGVSIDSEQV 80 Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118 AW K + ++ D + +R +L Sbjct: 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVL 116 >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192 Score = 36.3 bits (83), Expect = 0.004 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%) Query: 19 LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78 + +V+ D K V L+ P FT C ++ +K D + + E+ Sbjct: 11 AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVC-PSEIIALDKALDSFKERNV-EL 68 Query: 79 YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118 SV+ F AW K + L+ D S R +L Sbjct: 69 LGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL 114 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.7 bits (82), Expect = 0.006 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 42/117 (35%) Query: 45 FALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE--------EVYC---------LSVN--- 84 F LP +P S +P + I DL + VY LS + Sbjct: 420 F-LP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477 Query: 85 DAFVM------NAWGKKLEIKNVKLL---PDG-SGEFTRKMGMLVY--KDNVGFGLR 129 W + K +L P G SG +G+L + KD G G+R Sbjct: 478 RIVDCIIRLPVK-WETTTQFKATHILDFGPGGASG-----LGVLTHRNKD--GTGVR 526 >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187 Score = 34.4 bits (78), Expect = 0.016 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 +V D GK + P F+ C +L +K Y + + EVY +S + FV Sbjct: 22 FEVTEAD-LKGKWSIVVFYPADFSFVC-PTELEDVQKEYAE-LKKLGVEVYSVSTDTHFV 78 Query: 89 MNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124 AW + ++ D S +R+ +L + + Sbjct: 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL 117 >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 220 Score = 34.0 bits (77), Expect = 0.021 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%) Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88 D LF+ P FTP C+ +L K+++D ++ S N Sbjct: 21 GDFELYKYIENSWAILFSHPNDFTPVCT-TELAELGKMHEDFLKLNC-KLIGFSCNSKES 78 Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD 139 + W + ++ + ++ D S E K+ ++ ++ GL Sbjct: 79 HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFIS 135 >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220 Score = 32.5 bits (73), Expect = 0.052 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86 ++K+++ D F GK + LF P FT C F + EV +SV+ Sbjct: 45 EFKEISLDD-FKGKYLVLFFYPLDFTFVCPTEI-IAFSDKASEFHDVNC-EVVAVSVDSH 101 Query: 87 FVMNAWGKK------LEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124 F AW L N+ LL D + + +R G+L+ + Sbjct: 102 FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 145 >1vki_A Hypothetical protein ATU3699; 15159614, structural genomics, JCSG, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1 Length = 181 Score = 25.8 bits (56), Expect = 4.9 Identities = 8/57 (14%), Positives = 14/57 (24%) Query: 24 KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYC 80 K + +L +PG+ T + + D E V Sbjct: 91 KTIGAASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNG 147 >1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* Length = 197 Score = 25.4 bits (55), Expect = 8.0 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 90 NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEE 149 N +GK L + V+ +P G EF V+ DN G+ +++ ++ ES+F E Sbjct: 4 NFFGKTLAARPVEAIP-GMLEFDIP----VHGDNRGWFKENFQKEKMLPLGFPESFFAEG 58 Query: 150 GFSDNC 155 +N Sbjct: 59 KLQNNV 64 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.140 0.436 Gapped Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,638,000 Number of extensions: 74865 Number of successful extensions: 170 Number of sequences better than 10.0: 1 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 33 Length of query: 177 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 91 Effective length of database: 3,608,246 Effective search space: 328350386 Effective search space used: 328350386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.6 bits)