BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780311|ref|YP_003064724.1| hypothetical protein
CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62]
         (177 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 177

 Score =  369 bits (947), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL 60
           MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL
Sbjct: 1   MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL 60

Query: 61  PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120
           PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY
Sbjct: 61  PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120

Query: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177
           KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK
Sbjct: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177


>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score = 25.0 bits (53), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 21/109 (19%)

Query: 30  DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL----RCEGIEEV-YCLSV- 83
           D+    L  G R++LF++     P  S  + P   K +D++     C  + E+ Y + V 
Sbjct: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVM 165

Query: 84  ----NDAFVMNAWGKKLEIKNVKLLPDG-----------SGEFTRKMGM 117
                D  + +  G+KL+        D            SGEF R MG+
Sbjct: 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGL 214


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 28  WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAF 87
           W ++N+  LF+ K++ L               L   +K+ D L     EE+   ++ +  
Sbjct: 71  WNEINSTSLFSKKKIILIE------------NLSTEKKVLDCL-----EEIIIKNICNHI 113

Query: 88  VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123
           ++    K  EIK    L   + +FT  + +  Y DN
Sbjct: 114 II---IKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146


>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 22.3 bits (46), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 36  LFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL----RCEGIEEV-YCLSV-----ND 85
           L  G R++LF+      P  S  + PG  + +D++     C  + E+ Y + V      D
Sbjct: 112 LIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171

Query: 86  AFVMNAWGKKLEIKNVKLLPDG-----------SGEFTRKMGM 117
             + +  G+KL+        D            SGEF R M +
Sbjct: 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDL 214


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,173
Number of Sequences: 1233
Number of extensions: 4896
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 328,796
effective HSP length: 68
effective length of query: 109
effective length of database: 244,952
effective search space: 26699768
effective search space used: 26699768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)