BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62] (177 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62] Length = 177 Score = 369 bits (947), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL 60 MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL Sbjct: 1 MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL 60 Query: 61 PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120 PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY Sbjct: 61 PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120 Query: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK Sbjct: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177 >gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 25.0 bits (53), Expect = 0.76, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 21/109 (19%) Query: 30 DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL----RCEGIEEV-YCLSV- 83 D+ L G R++LF++ P S + P K +D++ C + E+ Y + V Sbjct: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVM 165 Query: 84 ----NDAFVMNAWGKKLEIKNVKLLPDG-----------SGEFTRKMGM 117 D + + G+KL+ D SGEF R MG+ Sbjct: 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGL 214 >gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 20/96 (20%) Query: 28 WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAF 87 W ++N+ LF+ K++ L L +K+ D L EE+ ++ + Sbjct: 71 WNEINSTSLFSKKKIILIE------------NLSTEKKVLDCL-----EEIIIKNICNHI 113 Query: 88 VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123 ++ K EIK L + +FT + + Y DN Sbjct: 114 II---IKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146 >gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 22.3 bits (46), Expect = 4.8, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 21/103 (20%) Query: 36 LFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL----RCEGIEEV-YCLSV-----ND 85 L G R++LF+ P S + PG + +D++ C + E+ Y + V D Sbjct: 112 LIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 Query: 86 AFVMNAWGKKLEIKNVKLLPDG-----------SGEFTRKMGM 117 + + G+KL+ D SGEF R M + Sbjct: 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDL 214 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.140 0.436 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,173 Number of Sequences: 1233 Number of extensions: 4896 Number of successful extensions: 10 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 6 length of query: 177 length of database: 328,796 effective HSP length: 68 effective length of query: 109 effective length of database: 244,952 effective search space: 26699768 effective search space used: 26699768 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 35 (18.1 bits)