HHsearch alignment for GI: 254780312 and conserved domain: COG0745
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.95 E-value=3.1e-26 Score=178.23 Aligned_cols=118 Identities=30% Similarity=0.480 Sum_probs=112.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985-8998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~s 81 (122)
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899991888999999999987597899978989999997269-999999889998568999999985168999889996
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 80 ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred CCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6872888999997563423348899899999999996736