HHsearch alignment for GI: 254780312 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.96 E-value=4.8e-28 Score=189.02 Aligned_cols=121 Identities=39% Similarity=0.642 Sum_probs=117.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 76878999297899999999999769748985899999999862899989981678999669999999963899988998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 28899999999985570333218999999999999999876