HHsearch alignment for GI: 254780312 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.96  E-value=4.8e-28  Score=189.02  Aligned_cols=121  Identities=39%  Similarity=0.642  Sum_probs=117.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r    1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI   80 (122)
Q Consensus         1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~   80 (122)
T Consensus         3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~   82 (464)
T COG2204           3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM   82 (464)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             76878999297899999999999769748985899999999862899989981678999669999999963899988998


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             43797899999997699869976979899999999996036
Q gi|254780312|r   81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK  121 (122)
Q Consensus        81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~  121 (122)
T Consensus        83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~  123 (464)
T COG2204          83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR  123 (464)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             28899999999985570333218999999999999999876