HHsearch alignment for GI: 254780312 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.88  E-value=2.3e-21  Score=149.01  Aligned_cols=119  Identities=29%  Similarity=0.450  Sum_probs=113.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEEE
Q ss_conf             6699975998999999999998898999999979999999718998999983655999799999999858--99859999
Q gi|254780312|r    3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMFI   80 (122)
Q Consensus         3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~~   80 (122)
T Consensus       133 ~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~  212 (435)
T COG3706         133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILL  212 (435)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             50899748077999999998753633665159899999974689858999557876678999999724444456638999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             43797899999997699869976979899999999996036
Q gi|254780312|r   81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK  121 (122)
Q Consensus        81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~  121 (122)
T Consensus       213 ~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~  253 (435)
T COG3706         213 SSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK  253 (435)
T ss_pred             ECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf             52663478999997688516734778799999999999854