HHsearch alignment for GI: 254780312 and conserved domain: COG4999

>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms].
Probab=96.19  E-value=0.034  Score=34.14  Aligned_cols=109  Identities=11%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH-HHHHHCCCC-CEEE
Q ss_conf             86699975998999999999998898999999979999999718998999983655999799999-999858998-5999
Q gi|254780312|r    2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR-RATELDPDL-KVMF   79 (122)
Q Consensus         2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~-~ir~~~~~~-pii~   79 (122)
T Consensus        11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vil   86 (140)
T COG4999          11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFVIL   86 (140)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCCCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf             664577668608999999998468826884233----1002744520346536665568803889999999865313677


Q ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             94379789999999769986997697989999999
Q gi|254780312|r   80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV  114 (122)
Q Consensus        80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i  114 (122)
T Consensus        87 alPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl  121 (140)
T COG4999          87 ALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL  121 (140)
T ss_pred             ECCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
T ss_conf             36728887599996314286740765065667899