HHsearch alignment for GI: 254780312 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.96 E-value=6.2e-29 Score=194.36 Aligned_cols=118 Identities=24% Similarity=0.482 Sum_probs=114.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta~ 81 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTAL 81 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
T ss_conf 89999399999999999998789999998999999999851899999988999999872043567761679609999445
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 82 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~ 119 (226)
T PRK09836 82 GTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (226)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 89889999997699688636876799999999996626