HHsearch alignment for GI: 254780312 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.88  E-value=4.1e-21  Score=147.49  Aligned_cols=120  Identities=23%  Similarity=0.360  Sum_probs=113.1

Q ss_pred             CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             986-6999759989999999999988-98999-99997999999971899899998365599979999999985899859
Q gi|254780312|r    1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV   77 (122)
Q Consensus         1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi   77 (122)
T Consensus         1 M~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~i   80 (210)
T PRK09935          1 MKPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKV   80 (210)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf             99788999859699999999999629892899998999999999974799999988999998864056789873899708


Q ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             9994379789999999769986997697989999999999603
Q gi|254780312|r   78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI  120 (122)
Q Consensus        78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~  120 (122)
T Consensus        81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G  123 (210)
T PRK09935         81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSG  123 (210)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             9971767299999999668776886789999999999999859