HHsearch alignment for GI: 254780312 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.88 E-value=4.1e-21 Score=147.49 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=113.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-6999759989999999999988-98999-99997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
T Consensus 1 M~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~i 80 (210)
T PRK09935 1 MKPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKV 80 (210)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 99788999859699999999999629892899998999999999974799999988999998864056789873899708
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9994379789999999769986997697989999999999603
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G 123 (210)
T PRK09935 81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSG 123 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9971767299999999668776886789999999999999859