HHsearch alignment for GI: 254780312 and conserved domain: PRK10060
>PRK10060 RNase II stability modulator; Provisional.
Probab=90.92 E-value=1.5 Score=24.37 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=81.3
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHHCCCCCE-EE
Q ss_conf 759989999999999988989999--9997999999971899899998365-----599979999999985899859-99
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVM-----PEMDGIELARRATELDPDLKV-MF 79 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~m-----P~~dG~el~~~ir~~~~~~pi-i~ 79 (122)
T Consensus 537 ~~d~~~~~~~l~-~Lr~lGv~iALDDFGTGySSLsyL~~lPvd~lKIDrsFV~~i~~d~~~~aIV~aIi~LA~~Lgl~vV 615 (663)
T PRK10060 537 IENEELALSVIQ-QFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI 615 (663)
T ss_pred HCCHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 239999999999-9997899899989999733699984289998999989971604892279999999999998699899
Q ss_pred EECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998----699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i~~~l~ 119 (122)
T Consensus 616 AEGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~q~ 659 (663)
T PRK10060 616 AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYQK 659 (663)
T ss_pred EECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 91386499999999759999826753608999999999997442