HHsearch alignment for GI: 254780312 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.83 E-value=3.8e-19 Score=135.75 Aligned_cols=114 Identities=21% Similarity=0.296 Sum_probs=105.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 699975998999999999998-898999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
T Consensus 3 ~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~vivls 79 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIMLS 79 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEEEE
T ss_conf 999987979999999999812999599999899999999887449999998788788620779999843---87489997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 80 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G 118 (196)
T PRK10360 80 VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 307599999999759988997789999999999999869