HHsearch alignment for GI: 254780312 and conserved domain: PRK10840

>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.86  E-value=3.7e-20  Score=141.77  Aligned_cols=120  Identities=21%  Similarity=0.213  Sum_probs=112.1

Q ss_pred             CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHHCCC
Q ss_conf             986-6999759989999999999988-98999-9999799999997189989999836559---9979999999985899
Q gi|254780312|r    1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE---MDGIELARRATELDPD   74 (122)
Q Consensus         1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~---~dG~el~~~ir~~~~~   74 (122)
T Consensus         1 M~~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~   80 (216)
T PRK10840          1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS   80 (216)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             99888999889799999999998159996899987999999999862398989982677999887899999999985899


Q ss_pred             CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             8599994379789999999769986997697989999999999603
Q gi|254780312|r   75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI  120 (122)
Q Consensus        75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~  120 (122)
T Consensus        81 ~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G  126 (216)
T PRK10840         81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG  126 (216)
T ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             8089984778789999998589748998789999999999999879