HHsearch alignment for GI: 254780312 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.86 E-value=3.7e-20 Score=141.77 Aligned_cols=120 Identities=21% Similarity=0.213 Sum_probs=112.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHHCCC
Q ss_conf 986-6999759989999999999988-98999-9999799999997189989999836559---9979999999985899
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE---MDGIELARRATELDPD 74 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~---~dG~el~~~ir~~~~~ 74 (122)
T Consensus 1 M~~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~ 80 (216)
T PRK10840 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99888999889799999999998159996899987999999999862398989982677999887899999999985899
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8599994379789999999769986997697989999999999603
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 81 ~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 8089984778789999998589748998789999999999999879