HHsearch alignment for GI: 254780312 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.49 E-value=7.8e-13 Score=97.92 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=89.8
Q ss_pred HHHHHHHHHHCC---C--EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 999999999889---8--99-99999799999997189989999836559997999999998589985999943797899
Q gi|254780312|r 15 RRFLIKALGKAG---Y--EV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 15 r~~l~~~L~~~G---~--~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~ 88 (122)
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~~ 82 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEAR 82 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999789971899974768799
Q ss_pred HHHHH-HCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999-76998699769798999999999960
Q gi|254780312|r 89 NPDSN-APKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 89 ~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
T Consensus 83 v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~ 114 (205)
T PRK11475 83 LIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (205)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99999984166888567889999999999870