HHsearch alignment for GI: 254780312 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.96 E-value=7.4e-28 Score=187.92 Aligned_cols=117 Identities=24% Similarity=0.418 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lta~ 80 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTAR 80 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEECC
T ss_conf 89999698999999999999889999998999999999852899999984999873689999999856-88648999565
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~ 118 (223)
T PRK11517 81 DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 56578999998398776208977899999999996414